Wall clock time and date at job start Wed Apr 1 2020 04:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99898 * 2 1 4 4 H 1.48512 * 109.47042 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47173 * 299.99430 * 3 2 1 6 6 H 1.48497 * 109.47224 * 59.99944 * 3 2 1 7 7 C 1.37881 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00186 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99985 * 0.02562 * 7 2 1 10 10 N 1.46894 * 109.47134 * 179.97438 * 9 7 2 11 11 C 1.46954 * 110.99877 * 169.99823 * 10 9 7 12 12 C 1.53051 * 109.36623 * 183.18975 * 11 10 9 13 13 N 1.46957 * 109.36529 * 301.60200 * 12 11 10 14 14 C 1.46904 * 111.00363 * 183.19051 * 13 12 11 15 15 C 1.50693 * 109.47314 * 169.99669 * 14 13 12 16 16 C 1.39929 * 125.87577 * 94.99611 * 15 14 13 17 17 C 1.35319 * 107.93023 * 180.02562 * 16 15 14 18 18 N 1.35227 * 107.71151 * 0.26686 * 17 16 15 19 19 C 1.40178 * 126.05045 * 179.73265 * 18 17 16 20 20 C 1.38868 * 120.05258 * 179.97438 * 19 18 17 21 21 C 1.38111 * 119.98745 * 180.02562 * 20 19 18 22 22 C 1.38270 * 120.08877 * 359.97438 * 21 20 19 23 23 C 1.38487 * 120.10723 * 359.97438 * 22 21 20 24 24 F 1.35101 * 119.99109 * 180.02562 * 23 22 21 25 25 C 1.38365 * 120.01515 * 359.76106 * 23 22 21 26 26 N 1.30867 * 125.88056 * 275.02271 * 15 14 13 27 27 C 1.46954 * 110.88171 * 59.31703 * 13 12 11 28 28 C 1.46948 * 111.00332 * 293.79915 * 10 9 7 29 29 H 0.96999 * 120.00479 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46889 * 59.99873 * 9 7 2 31 31 H 1.09005 * 109.46819 * 300.00313 * 9 7 2 32 32 H 1.09001 * 109.48990 * 63.22349 * 11 10 9 33 33 H 1.09000 * 109.49611 * 303.15685 * 11 10 9 34 34 H 1.09005 * 109.49261 * 181.63648 * 12 11 10 35 35 H 1.09003 * 109.49109 * 61.56647 * 12 11 10 36 36 H 1.09000 * 109.46824 * 49.99613 * 14 13 12 37 37 H 1.09003 * 109.46462 * 290.00172 * 14 13 12 38 38 H 1.07998 * 126.03379 * 0.05998 * 16 15 14 39 39 H 1.08002 * 126.13971 * 179.97438 * 17 16 15 40 40 H 1.08006 * 120.00830 * 0.02562 * 20 19 18 41 41 H 1.07993 * 119.95666 * 180.02562 * 21 20 19 42 42 H 1.07995 * 119.94839 * 180.02562 * 22 21 20 43 43 H 1.07998 * 120.04791 * 180.27788 * 25 23 22 44 44 H 1.09000 * 109.48640 * 60.64454 * 27 13 12 45 45 H 1.08995 * 109.48726 * 180.71515 * 27 13 12 46 46 H 1.09002 * 109.49187 * 296.78348 * 28 10 9 47 47 H 1.09005 * 109.49090 * 56.82194 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5210 -4.8940 0.2388 12 6 2.5565 -6.0187 0.3105 13 7 3.3196 -6.0593 -0.9448 14 6 4.2742 -7.1759 -0.9448 15 6 4.8582 -7.3375 -2.3245 16 6 6.0643 -6.7885 -2.7740 17 6 6.2362 -7.1603 -4.0637 18 7 5.1716 -7.9141 -4.4200 19 6 4.9557 -8.4947 -5.6775 20 6 3.8131 -9.2496 -5.9080 21 6 3.6021 -9.8215 -7.1473 22 6 4.5268 -9.6431 -8.1596 23 6 5.6671 -8.8902 -7.9342 24 9 6.5688 -8.7170 -8.9252 25 6 5.8803 -8.3107 -6.6960 26 7 4.3245 -8.0150 -3.3088 27 6 4.0043 -4.7810 -1.1830 28 6 2.9687 -3.6563 -1.2547 29 1 -0.4851 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6241 -2.5567 0.8903 32 1 0.8254 -5.0915 -0.5768 33 1 0.9734 -4.8434 1.1799 34 1 2.0486 -6.9718 0.4582 35 1 3.2357 -5.8353 1.1431 36 1 3.7602 -8.0933 -0.6581 37 1 5.0740 -6.9700 -0.2334 38 1 6.7390 -6.1766 -2.1938 39 1 7.0713 -6.8978 -4.6963 40 1 3.0897 -9.3894 -5.1183 41 1 2.7131 -10.4081 -7.3262 42 1 4.3593 -10.0910 -9.1280 43 1 6.7671 -7.7197 -6.5210 44 1 4.6998 -4.5835 -0.3673 45 1 4.5519 -4.8317 -2.1241 46 1 2.2897 -3.8397 -2.0873 47 1 3.4764 -2.7030 -1.4027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611175513.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:33 Heat of formation + Delta-G solvation = 62.842484 kcal Electronic energy + Delta-G solvation = -28831.060032 eV Core-core repulsion = 24736.508142 eV Total energy + Delta-G solvation = -4094.551890 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.171 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.02499 -42.63573 -40.24201 -39.76336 -36.87098 -34.90738 -34.23447 -32.04003 -31.84641 -31.48681 -30.62048 -29.66613 -27.80744 -25.63943 -24.72163 -24.29115 -23.57657 -23.08397 -21.88702 -20.73649 -20.53969 -19.58215 -18.49474 -17.44562 -17.36912 -17.24116 -17.03445 -16.80846 -16.53041 -16.20658 -15.98752 -15.83227 -15.58253 -15.24347 -15.16427 -14.92298 -14.81369 -14.48274 -14.14931 -14.07367 -13.59970 -13.48232 -13.24450 -13.18058 -13.03434 -12.84766 -12.70189 -12.45025 -12.36784 -12.25298 -12.11082 -11.94191 -11.67003 -11.47716 -11.27360 -11.10332 -10.63106 -10.17281 -10.01322 -9.34631 -9.12703 -9.03308 -8.21207 -6.31667 -0.34570 0.00979 1.05792 1.25491 1.40802 1.41350 1.55192 1.63297 2.39931 2.51566 3.05390 3.09414 3.11045 3.29965 3.33187 3.63970 3.77456 3.85400 3.95377 3.99822 4.11673 4.18735 4.22976 4.30854 4.39320 4.43751 4.50376 4.61291 4.61655 4.69184 4.72338 4.85066 4.88321 4.94554 4.97547 4.99204 5.03089 5.06313 5.16455 5.21631 5.22520 5.27623 5.52608 5.63566 5.64601 5.99567 6.05258 6.07561 6.10298 6.33245 6.59920 6.61785 6.84431 7.38110 8.90449 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013688 B = 0.002094 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.042920 B =13368.018267 C =14173.418972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.972 3.028 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.065 0.935 9 C 0.208 3.792 10 N -0.540 5.540 11 C 0.053 3.947 12 C 0.074 3.926 13 N -0.548 5.548 14 C 0.137 3.863 15 C 0.090 3.910 16 C -0.257 4.257 17 C 0.051 3.949 18 N -0.337 5.337 19 C 0.175 3.825 20 C -0.146 4.146 21 C -0.057 4.057 22 C -0.161 4.161 23 C 0.116 3.884 24 F -0.137 7.137 25 C -0.183 4.183 26 N -0.302 5.302 27 C 0.075 3.925 28 C 0.071 3.929 29 H 0.264 0.736 30 H -0.045 1.045 31 H 0.006 0.994 32 H 0.014 0.986 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.051 0.949 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.174 0.826 39 H 0.211 0.789 40 H 0.134 0.866 41 H 0.172 0.828 42 H 0.166 0.834 43 H 0.157 0.843 44 H 0.049 0.951 45 H 0.082 0.918 46 H 0.004 0.996 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.578 -22.895 -12.839 30.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.199 4.199 3 Si 0.796 3.204 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.083 0.917 9 C 0.081 3.919 10 N -0.265 5.265 11 C -0.076 4.076 12 C -0.054 4.054 13 N -0.274 5.274 14 C 0.008 3.992 15 C -0.079 4.079 16 C -0.285 4.285 17 C -0.089 4.089 18 N -0.113 5.113 19 C 0.082 3.918 20 C -0.166 4.166 21 C -0.075 4.075 22 C -0.180 4.180 23 C 0.096 3.904 24 F -0.116 7.116 25 C -0.205 4.205 26 N -0.122 5.122 27 C -0.053 4.053 28 C -0.058 4.058 29 H 0.073 0.927 30 H -0.027 1.027 31 H 0.024 0.976 32 H 0.033 0.967 33 H 0.094 0.906 34 H 0.118 0.882 35 H 0.069 0.931 36 H 0.117 0.883 37 H 0.096 0.904 38 H 0.191 0.809 39 H 0.227 0.773 40 H 0.152 0.848 41 H 0.189 0.811 42 H 0.183 0.817 43 H 0.175 0.825 44 H 0.067 0.933 45 H 0.100 0.900 46 H 0.022 0.978 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.500 -23.520 -13.284 30.198 hybrid contribution 0.562 1.788 0.069 1.876 sum 14.062 -21.732 -13.215 29.063 Atomic orbital electron populations 1.70102 1.07832 1.27868 1.51858 1.25968 0.95777 1.03375 0.94794 0.85295 0.79036 0.78351 0.77701 1.18469 1.20530 1.20286 1.21475 0.93634 0.90917 1.49907 0.91729 1.19366 0.90134 0.89174 0.93202 1.62241 1.27149 1.03063 1.34028 1.22189 0.95804 0.89624 0.99952 1.22083 0.95324 0.98225 0.89733 1.62014 1.26498 1.03244 1.35661 1.20430 0.94855 0.95095 0.88813 1.22568 0.94133 0.95389 0.95787 1.21864 1.00537 1.10088 0.96057 1.23194 0.93278 0.95008 0.97461 1.45950 1.17087 1.39739 1.08529 1.17429 0.96315 0.96309 0.81745 1.21149 0.96720 0.99068 0.99651 1.21241 0.99430 0.96730 0.90131 1.21544 0.93165 1.00762 1.02511 1.17398 0.88976 0.99243 0.84754 1.91526 1.66281 1.93923 1.59849 1.20761 1.02087 1.05985 0.91655 1.77394 1.16006 1.25430 0.93386 1.22056 0.94550 0.87446 1.01218 1.21948 0.95643 0.98575 0.89591 0.92686 1.02738 0.97590 0.96736 0.90621 0.88152 0.93096 0.88299 0.90357 0.80884 0.77274 0.84806 0.81103 0.81662 0.82524 0.93289 0.89981 0.97814 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.50 13.29 21.45 0.28 -57.21 16 2 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 3 Si 0.97 44.76 29.54 68.60 2.03 46.78 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.52 -30.15 8.47 25.60 0.22 -29.93 16 8 H 0.06 3.64 7.13 -2.91 -0.02 3.62 16 9 C 0.21 11.53 4.72 85.56 0.40 11.93 16 10 N -0.54 -24.32 4.70 -900.30 -4.23 -28.55 16 11 C 0.05 1.98 5.61 86.31 0.48 2.47 16 12 C 0.07 2.08 5.61 86.31 0.48 2.56 16 13 N -0.55 -15.69 4.70 -900.27 -4.23 -19.92 16 14 C 0.14 3.02 5.52 85.55 0.47 3.49 16 15 C 0.09 2.15 5.94 43.11 0.26 2.40 16 16 C -0.26 -5.05 9.67 22.01 0.21 -4.84 16 17 C 0.05 0.93 10.80 83.50 0.90 1.83 16 18 N -0.34 -7.70 3.80 -187.78 -0.71 -8.41 16 19 C 0.17 3.48 6.69 38.09 0.25 3.73 16 20 C -0.15 -2.64 9.66 22.39 0.22 -2.43 16 21 C -0.06 -0.68 10.04 22.25 0.22 -0.46 16 22 C -0.16 -1.86 10.02 22.34 0.22 -1.64 16 23 C 0.12 1.74 7.30 22.36 0.16 1.90 16 24 F -0.14 -2.20 17.27 44.97 0.78 -1.43 16 25 C -0.18 -2.91 9.43 22.43 0.21 -2.70 16 26 N -0.30 -8.16 11.87 -47.34 -0.56 -8.72 16 27 C 0.08 2.35 5.41 86.31 0.47 2.82 16 28 C 0.07 2.94 5.43 86.31 0.47 3.41 16 29 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 30 H -0.05 -2.77 8.12 -2.39 -0.02 -2.79 16 31 H 0.01 0.36 8.03 -2.38 -0.02 0.34 16 32 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.08 2.75 8.07 -2.39 -0.02 2.73 16 34 H 0.10 2.29 8.07 -2.38 -0.02 2.27 16 35 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.10 1.98 8.03 -2.39 -0.02 1.96 16 37 H 0.08 1.42 8.12 -2.39 -0.02 1.40 16 38 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 39 H 0.21 2.06 7.04 -2.91 -0.02 2.04 16 40 H 0.13 2.70 7.70 -2.91 -0.02 2.68 16 41 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 42 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 43 H 0.16 1.85 6.74 -2.91 -0.02 1.83 16 44 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.08 2.40 6.38 -2.39 -0.02 2.38 16 46 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 47 H 0.07 3.02 6.79 -2.38 -0.02 3.00 16 Total: -1.00 -73.31 387.51 0.44 -72.86 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 0.97 Total: 9.66 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 6.12 Total: -5.07 kcal Atomic # 7 Polarization: -113.36 SS G_CDS: -9.45 Total: -122.81 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.78 Total: -1.43 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -73.31 0.44 -72.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611175513.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.706 kcal (2) G-P(sol) polarization free energy of solvation -73.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds