Wall clock time and date at job start Wed Apr 1 2020 04:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99942 * 2 1 4 4 H 1.48501 * 109.46863 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47096 * 300.00735 * 3 2 1 6 6 H 1.48500 * 109.46942 * 60.00320 * 3 2 1 7 7 C 1.37876 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00074 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00183 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47292 * 180.02562 * 9 7 2 11 11 C 1.46956 * 110.99677 * 170.00200 * 10 9 7 12 12 C 1.53057 * 109.36162 * 183.18894 * 11 10 9 13 13 N 1.46954 * 109.36263 * 301.59585 * 12 11 10 14 14 C 1.46908 * 110.99966 * 183.18687 * 13 12 11 15 15 C 1.50697 * 109.46615 * 46.20263 * 14 13 12 16 16 C 1.39906 * 125.87850 * 95.00635 * 15 14 13 17 17 C 1.35335 * 107.93199 * 179.97438 * 16 15 14 18 18 N 1.35203 * 107.71612 * 359.97438 * 17 16 15 19 19 C 1.40256 * 126.05355 * 180.02562 * 18 17 16 20 20 C 1.38788 * 120.07707 * 359.72363 * 19 18 17 21 21 C 1.38140 * 119.95799 * 179.72134 * 20 19 18 22 22 C 1.38288 * 120.10890 * 0.58108 * 21 20 19 23 23 C 1.38248 * 120.15536 * 359.69894 * 22 21 20 24 24 C 1.38338 * 120.03812 * 359.97438 * 23 22 21 25 25 F 1.35105 * 120.05221 * 180.02562 * 24 23 22 26 26 N 1.30894 * 125.88311 * 274.69009 * 15 14 13 27 27 C 1.46956 * 110.88042 * 59.32532 * 13 12 11 28 28 C 1.46954 * 110.99900 * 293.79852 * 10 9 7 29 29 H 0.96999 * 120.00715 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.46825 * 60.00370 * 9 7 2 31 31 H 1.09002 * 109.47091 * 300.00411 * 9 7 2 32 32 H 1.09002 * 109.48908 * 303.15220 * 11 10 9 33 33 H 1.09002 * 109.49369 * 63.22349 * 11 10 9 34 34 H 1.08997 * 109.48880 * 61.56749 * 12 11 10 35 35 H 1.09004 * 109.48844 * 181.62946 * 12 11 10 36 36 H 1.08997 * 109.47258 * 166.20113 * 14 13 12 37 37 H 1.09001 * 109.46957 * 286.20350 * 14 13 12 38 38 H 1.07996 * 126.03667 * 359.97438 * 16 15 14 39 39 H 1.08005 * 126.14242 * 179.97438 * 17 16 15 40 40 H 1.08003 * 120.02065 * 0.02718 * 20 19 18 41 41 H 1.07999 * 119.94499 * 180.29764 * 21 20 19 42 42 H 1.08002 * 119.92227 * 179.72158 * 22 21 20 43 43 H 1.08002 * 119.97913 * 180.02562 * 23 22 21 44 44 H 1.09002 * 109.48908 * 180.71202 * 27 13 12 45 45 H 1.09002 * 109.49369 * 60.64073 * 27 13 12 46 46 H 1.08997 * 109.49355 * 296.78047 * 28 10 9 47 47 H 1.09003 * 109.49032 * 56.82589 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5210 -4.8939 0.2377 12 6 2.5565 -6.0187 0.3093 13 7 3.3195 -6.0592 -0.9460 14 6 4.2742 -7.1758 -0.9460 15 6 3.5858 -8.4251 -0.4600 16 6 3.0019 -9.4067 -1.2681 17 6 2.4912 -10.3634 -0.4584 18 7 2.7443 -9.9994 0.8189 19 6 2.3823 -10.7165 1.9687 20 6 1.6940 -11.9161 1.8523 21 6 1.3438 -12.6231 2.9862 22 6 1.6672 -12.1318 4.2377 23 6 2.3476 -10.9344 4.3592 24 6 2.7073 -10.2245 3.2276 25 9 3.3727 -9.0547 3.3460 26 7 3.4363 -8.7818 0.7905 27 6 4.0043 -4.7809 -1.1842 28 6 2.9687 -3.6562 -1.2558 29 1 -0.4851 0.8400 0.0004 30 1 0.6242 -2.5567 -0.8904 31 1 0.6247 -2.5571 0.8897 32 1 0.9734 -4.8433 1.1788 33 1 0.8254 -5.0915 -0.5780 34 1 3.2356 -5.8353 1.1420 35 1 2.0486 -6.9718 0.4571 36 1 4.6460 -7.3360 -1.9580 37 1 5.1087 -6.9403 -0.2854 38 1 2.9651 -9.4018 -2.3474 39 1 1.9744 -11.2571 -0.7756 40 1 1.4368 -12.2990 0.8758 41 1 0.8125 -13.5590 2.8952 42 1 1.3879 -12.6848 5.1223 43 1 2.5991 -10.5535 5.3380 44 1 4.5519 -4.8316 -2.1253 45 1 4.6998 -4.5834 -0.3685 46 1 2.2897 -3.8396 -2.0885 47 1 3.4764 -2.7030 -1.4038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614991835.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:43 Heat of formation + Delta-G solvation = 92.199027 kcal Electronic energy + Delta-G solvation = -29535.894563 eV Core-core repulsion = 25442.615668 eV Total energy + Delta-G solvation = -4093.278895 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.171 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.98499 -41.79093 -39.35546 -38.54458 -35.40978 -33.76356 -32.40833 -31.25453 -30.67446 -30.17106 -29.78526 -28.18816 -26.20874 -24.21359 -23.81056 -22.91608 -22.64440 -21.33282 -21.07771 -19.78899 -19.05146 -18.66977 -17.44773 -16.46516 -16.32115 -16.21686 -15.82970 -15.55489 -15.09070 -14.88395 -14.65705 -14.44081 -14.41669 -14.12526 -13.88426 -13.69522 -13.42859 -13.26628 -13.22329 -12.73451 -12.57174 -12.32911 -12.14150 -11.88790 -11.69207 -11.53177 -11.12467 -10.82923 -10.77365 -10.70614 -10.58053 -10.51768 -10.28456 -10.20332 -9.66227 -9.41012 -9.28275 -9.09310 -8.39763 -8.34213 -8.03873 -7.14185 -5.97923 -3.99050 0.32855 0.64678 1.83423 2.03008 2.51602 3.13821 3.34123 3.41230 3.46366 3.69295 4.02873 4.24759 4.31784 4.41683 4.46679 4.48406 4.66314 4.72862 4.95661 5.04683 5.10410 5.34081 5.37667 5.43886 5.48791 5.49878 5.51716 5.64199 5.66071 5.69065 5.83561 5.84296 5.90954 5.97345 5.99823 6.14698 6.17912 6.32960 6.42363 6.54922 6.68207 6.75101 6.82915 7.24707 7.25609 7.41958 7.43074 7.45946 7.86051 8.15799 8.28714 8.61999 9.09000 9.64969 11.13082 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.016983 B = 0.002287 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.271126 B =12238.737919 C =13121.742547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.538 5.538 11 C 0.059 3.941 12 C 0.064 3.936 13 N -0.532 5.532 14 C 0.132 3.868 15 C 0.093 3.907 16 C -0.234 4.234 17 C 0.045 3.955 18 N -0.328 5.328 19 C 0.133 3.867 20 C -0.119 4.119 21 C -0.104 4.104 22 C -0.104 4.104 23 C -0.133 4.133 24 C 0.100 3.900 25 F -0.112 7.112 26 N -0.267 5.267 27 C 0.058 3.942 28 C 0.068 3.932 29 H 0.260 0.740 30 H -0.009 1.009 31 H 0.029 0.971 32 H 0.069 0.931 33 H 0.028 0.972 34 H 0.041 0.959 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.050 0.950 38 H 0.157 0.843 39 H 0.178 0.822 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.145 0.855 44 H 0.073 0.927 45 H 0.041 0.959 46 H 0.029 0.971 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.872 -29.927 2.343 30.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.543 4.543 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.264 5.264 11 C -0.070 4.070 12 C -0.064 4.064 13 N -0.258 5.258 14 C 0.003 3.997 15 C -0.075 4.075 16 C -0.263 4.263 17 C -0.096 4.096 18 N -0.104 5.104 19 C 0.038 3.962 20 C -0.139 4.139 21 C -0.123 4.123 22 C -0.123 4.123 23 C -0.152 4.152 24 C 0.079 3.921 25 F -0.090 7.090 26 N -0.087 5.087 27 C -0.069 4.069 28 C -0.060 4.060 29 H 0.070 0.930 30 H 0.009 0.991 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.069 0.931 38 H 0.175 0.825 39 H 0.195 0.805 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.156 0.844 43 H 0.162 0.838 44 H 0.091 0.909 45 H 0.059 0.941 46 H 0.047 0.953 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.955 -29.474 3.588 30.102 hybrid contribution 0.155 0.847 -0.825 1.192 sum 5.111 -28.627 2.763 29.211 Atomic orbital electron populations 1.69972 1.06067 1.26587 1.51261 1.24999 0.94859 0.99310 0.95547 0.86449 0.80080 0.83482 0.77452 1.19664 1.21137 1.21066 1.21202 0.93494 0.89940 1.49683 0.91847 1.19702 0.90078 0.87341 0.96065 1.62275 1.28161 1.02736 1.33211 1.22054 0.94813 0.89976 1.00191 1.22185 0.96121 0.98381 0.89702 1.62361 1.25065 1.02817 1.35558 1.20530 0.92809 0.85547 1.00822 1.22452 0.97840 0.96862 0.90344 1.21506 1.07972 0.95752 1.01028 1.22555 1.02354 1.01401 0.83308 1.45735 1.43693 1.17367 1.03593 1.17665 1.01400 0.93372 0.83731 1.20745 0.99666 0.92813 1.00720 1.21024 0.99790 1.00118 0.91393 1.21089 0.97759 0.95186 0.98235 1.21186 1.00360 0.95915 0.97766 1.17371 0.97935 0.84716 0.92092 1.91636 1.77202 1.43742 1.96462 1.77801 1.15375 0.95337 1.20176 1.22277 0.96228 0.88156 1.00274 1.21981 0.95438 0.97306 0.91313 0.93032 0.99078 0.95322 0.91308 0.95365 0.94097 0.91318 0.88622 0.93150 0.82543 0.80542 0.84327 0.84334 0.84407 0.83764 0.90881 0.94085 0.95276 0.89434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.50 -14.56 8.47 -34.44 -0.29 -14.85 16 8 H 0.06 1.81 7.13 -52.49 -0.37 1.43 16 9 C 0.19 5.28 4.72 -4.98 -0.02 5.25 16 10 N -0.54 -12.48 4.70 -235.90 -1.11 -13.59 16 11 C 0.06 1.21 5.61 -3.76 -0.02 1.19 16 12 C 0.06 1.16 4.96 -3.77 -0.02 1.14 16 13 N -0.53 -8.59 4.85 -235.90 -1.14 -9.74 16 14 C 0.13 1.76 5.85 -4.97 -0.03 1.73 16 15 C 0.09 1.27 5.19 -82.37 -0.43 0.84 16 16 C -0.23 -2.59 10.74 -39.99 -0.43 -3.02 16 17 C 0.04 0.44 10.80 -17.10 -0.18 0.26 16 18 N -0.33 -4.12 3.80 -10.65 -0.04 -4.16 16 19 C 0.13 1.44 6.69 -83.51 -0.56 0.88 16 20 C -0.12 -0.84 9.45 -39.41 -0.37 -1.22 16 21 C -0.10 -0.56 10.04 -39.60 -0.40 -0.96 16 22 C -0.10 -0.59 10.04 -39.56 -0.40 -0.99 16 23 C -0.13 -1.08 10.02 -39.54 -0.40 -1.47 16 24 C 0.10 1.16 7.29 -39.25 -0.29 0.87 16 25 F -0.11 -1.65 15.54 2.25 0.03 -1.62 16 26 N -0.27 -4.04 9.59 33.69 0.32 -3.72 16 27 C 0.06 0.97 5.58 -3.76 -0.02 0.95 16 28 C 0.07 1.40 5.43 -3.77 -0.02 1.38 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 31 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 32 H 0.07 1.42 8.07 -51.93 -0.42 1.00 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.07 1.24 6.00 -51.93 -0.31 0.93 16 36 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 38 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.18 0.98 7.04 -52.48 -0.37 0.61 16 40 H 0.14 0.64 6.74 -52.48 -0.35 0.28 16 41 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 42 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 43 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.09 1.88 6.79 -51.93 -0.35 1.53 16 LS Contribution 384.38 15.07 5.79 5.79 Total: -1.00 -34.70 384.38 -11.20 -45.91 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -6.80 Total: -2.74 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -3.97 Total: -6.55 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -1.23 Total: -57.83 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.03 Total: -1.62 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.70 -11.20 -45.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614991835.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.107 kcal (2) G-P(sol) polarization free energy of solvation -34.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds