Wall clock time and date at job start Wed Apr 1 2020 04:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99942 * 2 1 4 4 H 1.48501 * 109.46863 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47096 * 300.00735 * 3 2 1 6 6 H 1.48500 * 109.46942 * 60.00320 * 3 2 1 7 7 C 1.37876 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00074 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00183 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47292 * 180.02562 * 9 7 2 11 11 C 1.46956 * 110.99677 * 170.00200 * 10 9 7 12 12 C 1.53057 * 109.36162 * 183.18894 * 11 10 9 13 13 N 1.46954 * 109.36263 * 301.59585 * 12 11 10 14 14 C 1.46908 * 110.99966 * 183.18687 * 13 12 11 15 15 C 1.50697 * 109.46615 * 46.20263 * 14 13 12 16 16 C 1.39906 * 125.87850 * 95.00635 * 15 14 13 17 17 C 1.35335 * 107.93199 * 179.97438 * 16 15 14 18 18 N 1.35203 * 107.71612 * 359.97438 * 17 16 15 19 19 C 1.40256 * 126.05355 * 180.02562 * 18 17 16 20 20 C 1.38788 * 120.07707 * 359.72363 * 19 18 17 21 21 C 1.38140 * 119.95799 * 179.72134 * 20 19 18 22 22 C 1.38288 * 120.10890 * 0.58108 * 21 20 19 23 23 C 1.38248 * 120.15536 * 359.69894 * 22 21 20 24 24 C 1.38338 * 120.03812 * 359.97438 * 23 22 21 25 25 F 1.35105 * 120.05221 * 180.02562 * 24 23 22 26 26 N 1.30894 * 125.88311 * 274.69009 * 15 14 13 27 27 C 1.46956 * 110.88042 * 59.32532 * 13 12 11 28 28 C 1.46954 * 110.99900 * 293.79852 * 10 9 7 29 29 H 0.96999 * 120.00715 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.46825 * 60.00370 * 9 7 2 31 31 H 1.09002 * 109.47091 * 300.00411 * 9 7 2 32 32 H 1.09002 * 109.48908 * 303.15220 * 11 10 9 33 33 H 1.09002 * 109.49369 * 63.22349 * 11 10 9 34 34 H 1.08997 * 109.48880 * 61.56749 * 12 11 10 35 35 H 1.09004 * 109.48844 * 181.62946 * 12 11 10 36 36 H 1.08997 * 109.47258 * 166.20113 * 14 13 12 37 37 H 1.09001 * 109.46957 * 286.20350 * 14 13 12 38 38 H 1.07996 * 126.03667 * 359.97438 * 16 15 14 39 39 H 1.08005 * 126.14242 * 179.97438 * 17 16 15 40 40 H 1.08003 * 120.02065 * 0.02718 * 20 19 18 41 41 H 1.07999 * 119.94499 * 180.29764 * 21 20 19 42 42 H 1.08002 * 119.92227 * 179.72158 * 22 21 20 43 43 H 1.08002 * 119.97913 * 180.02562 * 23 22 21 44 44 H 1.09002 * 109.48908 * 180.71202 * 27 13 12 45 45 H 1.09002 * 109.49369 * 60.64073 * 27 13 12 46 46 H 1.08997 * 109.49355 * 296.78047 * 28 10 9 47 47 H 1.09003 * 109.49032 * 56.82589 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5210 -4.8939 0.2377 12 6 2.5565 -6.0187 0.3093 13 7 3.3195 -6.0592 -0.9460 14 6 4.2742 -7.1758 -0.9460 15 6 3.5858 -8.4251 -0.4600 16 6 3.0019 -9.4067 -1.2681 17 6 2.4912 -10.3634 -0.4584 18 7 2.7443 -9.9994 0.8189 19 6 2.3823 -10.7165 1.9687 20 6 1.6940 -11.9161 1.8523 21 6 1.3438 -12.6231 2.9862 22 6 1.6672 -12.1318 4.2377 23 6 2.3476 -10.9344 4.3592 24 6 2.7073 -10.2245 3.2276 25 9 3.3727 -9.0547 3.3460 26 7 3.4363 -8.7818 0.7905 27 6 4.0043 -4.7809 -1.1842 28 6 2.9687 -3.6562 -1.2558 29 1 -0.4851 0.8400 0.0004 30 1 0.6242 -2.5567 -0.8904 31 1 0.6247 -2.5571 0.8897 32 1 0.9734 -4.8433 1.1788 33 1 0.8254 -5.0915 -0.5780 34 1 3.2356 -5.8353 1.1420 35 1 2.0486 -6.9718 0.4571 36 1 4.6460 -7.3360 -1.9580 37 1 5.1087 -6.9403 -0.2854 38 1 2.9651 -9.4018 -2.3474 39 1 1.9744 -11.2571 -0.7756 40 1 1.4368 -12.2990 0.8758 41 1 0.8125 -13.5590 2.8952 42 1 1.3879 -12.6848 5.1223 43 1 2.5991 -10.5535 5.3380 44 1 4.5519 -4.8316 -2.1253 45 1 4.6998 -4.5834 -0.3685 46 1 2.2897 -3.8396 -2.0885 47 1 3.4764 -2.7030 -1.4038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614991835.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:42 Heat of formation + Delta-G solvation = 68.767029 kcal Electronic energy + Delta-G solvation = -29536.910650 eV Core-core repulsion = 25442.615668 eV Total energy + Delta-G solvation = -4094.294982 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.171 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.88137 -42.62224 -40.28036 -39.75351 -36.94891 -34.94156 -34.27839 -31.99973 -31.83490 -31.40883 -30.76905 -29.56973 -27.84804 -25.68157 -24.57138 -24.42796 -23.61993 -23.07130 -21.82709 -20.86583 -20.51436 -19.39929 -18.50754 -18.12879 -17.52598 -17.17429 -16.92905 -16.49867 -16.32235 -16.00605 -15.89859 -15.83188 -15.76039 -15.33732 -15.17443 -14.92243 -14.66147 -14.51110 -14.14428 -14.07105 -13.64161 -13.48176 -13.34106 -13.03717 -12.97504 -12.87517 -12.72047 -12.51038 -12.28860 -12.24157 -12.18839 -11.98421 -11.65674 -11.56688 -11.25779 -11.19608 -10.64613 -10.15724 -9.94789 -9.43455 -9.09313 -9.03719 -8.22467 -6.33381 -0.31652 0.07629 1.07995 1.29382 1.39990 1.41034 1.55066 1.64935 2.39073 2.57031 2.97592 3.05774 3.09422 3.24345 3.34128 3.62527 3.79491 3.86678 3.92592 4.05977 4.13571 4.23858 4.24931 4.26594 4.33279 4.44619 4.51564 4.54703 4.60202 4.70546 4.74195 4.80508 4.88231 4.92587 4.96132 4.97942 5.00980 5.07458 5.17892 5.19634 5.22954 5.33760 5.52124 5.61702 5.70741 5.88941 5.96425 6.03946 6.13319 6.31056 6.56044 6.57585 6.82350 7.36421 8.89418 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.016983 B = 0.002287 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.271126 B =12238.737919 C =13121.742547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.279 1.279 7 C -0.522 4.522 8 H 0.064 0.936 9 C 0.209 3.791 10 N -0.547 5.547 11 C 0.061 3.939 12 C 0.087 3.913 13 N -0.533 5.533 14 C 0.136 3.864 15 C 0.072 3.928 16 C -0.248 4.248 17 C 0.054 3.946 18 N -0.335 5.335 19 C 0.099 3.901 20 C -0.113 4.113 21 C -0.092 4.092 22 C -0.094 4.094 23 C -0.141 4.141 24 C 0.054 3.946 25 F -0.145 7.145 26 N -0.317 5.317 27 C 0.069 3.931 28 C 0.069 3.931 29 H 0.265 0.735 30 H -0.038 1.038 31 H -0.002 1.002 32 H 0.059 0.941 33 H 0.023 0.977 34 H 0.022 0.978 35 H 0.070 0.930 36 H 0.128 0.872 37 H 0.044 0.956 38 H 0.179 0.821 39 H 0.223 0.777 40 H 0.169 0.831 41 H 0.180 0.820 42 H 0.173 0.827 43 H 0.152 0.848 44 H 0.112 0.888 45 H 0.035 0.965 46 H 0.022 0.978 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.245 -32.699 1.517 33.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.204 1.204 7 C -0.560 4.560 8 H 0.083 0.917 9 C 0.083 3.917 10 N -0.272 5.272 11 C -0.068 4.068 12 C -0.042 4.042 13 N -0.259 5.259 14 C 0.007 3.993 15 C -0.094 4.094 16 C -0.276 4.276 17 C -0.087 4.087 18 N -0.111 5.111 19 C 0.006 3.994 20 C -0.133 4.133 21 C -0.110 4.110 22 C -0.112 4.112 23 C -0.160 4.160 24 C 0.032 3.968 25 F -0.124 7.124 26 N -0.138 5.138 27 C -0.059 4.059 28 C -0.060 4.060 29 H 0.074 0.926 30 H -0.020 1.020 31 H 0.016 0.984 32 H 0.077 0.923 33 H 0.041 0.959 34 H 0.040 0.960 35 H 0.088 0.912 36 H 0.146 0.854 37 H 0.062 0.938 38 H 0.197 0.803 39 H 0.239 0.761 40 H 0.186 0.814 41 H 0.197 0.803 42 H 0.190 0.810 43 H 0.169 0.831 44 H 0.130 0.870 45 H 0.054 0.946 46 H 0.040 0.960 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.346 -32.276 2.765 32.832 hybrid contribution -0.061 1.502 -0.482 1.579 sum 5.285 -30.773 2.284 31.307 Atomic orbital electron populations 1.70104 1.07860 1.27944 1.51728 1.25983 0.95798 1.03409 0.94659 0.85257 0.78929 0.78172 0.77784 1.18590 1.20098 1.20449 1.21453 0.93626 0.90807 1.50151 0.91736 1.19353 0.90086 0.89041 0.93193 1.62220 1.27314 1.02621 1.35055 1.22064 0.95520 0.89807 0.99408 1.21851 0.95193 0.96884 0.90257 1.62346 1.26070 1.03586 1.33868 1.20620 0.91723 0.84409 1.02520 1.22601 0.98643 0.97506 0.90685 1.21824 1.08193 0.95420 1.02148 1.23306 1.01076 1.02252 0.82027 1.45919 1.43336 1.16818 1.04995 1.18158 1.03292 0.94905 0.83054 1.21199 0.98070 0.91146 1.02916 1.21572 0.98206 1.00845 0.90402 1.21569 0.95741 0.93878 1.00043 1.21443 1.00615 0.96741 0.97162 1.17973 1.00014 0.84783 0.93980 1.91538 1.78327 1.45793 1.96712 1.77722 1.17271 0.97435 1.21370 1.22196 0.94703 0.86909 1.02071 1.22013 0.95719 0.98646 0.89596 0.92611 1.01997 0.98371 0.92285 0.95907 0.95989 0.91171 0.85415 0.93821 0.80324 0.76071 0.81408 0.80276 0.80985 0.83051 0.87036 0.94648 0.96017 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.37 13.29 21.45 0.28 -58.09 16 2 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 3 Si 0.97 45.62 29.54 68.60 2.03 47.65 16 4 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.52 -31.02 8.47 25.60 0.22 -30.81 16 8 H 0.06 3.74 7.13 -2.91 -0.02 3.72 16 9 C 0.21 12.09 4.72 85.56 0.40 12.50 16 10 N -0.55 -26.56 4.70 -900.26 -4.23 -30.79 16 11 C 0.06 2.64 5.61 86.31 0.48 3.13 16 12 C 0.09 3.26 4.96 86.31 0.43 3.69 16 13 N -0.53 -17.09 4.85 -900.25 -4.37 -21.46 16 14 C 0.14 3.51 5.85 85.55 0.50 4.01 16 15 C 0.07 1.97 5.19 43.10 0.22 2.19 16 16 C -0.25 -5.08 10.74 22.00 0.24 -4.85 16 17 C 0.05 0.97 10.80 83.50 0.90 1.87 16 18 N -0.33 -8.33 3.80 -187.60 -0.71 -9.05 16 19 C 0.10 2.12 6.69 38.11 0.26 2.37 16 20 C -0.11 -1.27 9.45 22.38 0.21 -1.06 16 21 C -0.09 -0.61 10.04 22.26 0.22 -0.38 16 22 C -0.09 -0.79 10.04 22.28 0.22 -0.57 16 23 C -0.14 -2.23 10.02 22.30 0.22 -2.01 16 24 C 0.05 1.30 7.29 22.48 0.16 1.47 16 25 F -0.15 -4.73 15.54 44.97 0.70 -4.03 16 26 N -0.32 -9.95 9.59 -47.34 -0.45 -10.40 16 27 C 0.07 2.24 5.58 86.31 0.48 2.72 16 28 C 0.07 2.87 5.43 86.31 0.47 3.34 16 29 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 30 H -0.04 -2.34 8.12 -2.39 -0.02 -2.36 16 31 H 0.00 -0.11 8.03 -2.39 -0.02 -0.13 16 32 H 0.06 2.62 8.07 -2.39 -0.02 2.60 16 33 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 2.65 6.00 -2.39 -0.01 2.64 16 36 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.04 1.19 8.08 -2.39 -0.02 1.17 16 38 H 0.18 2.65 8.06 -2.91 -0.02 2.63 16 39 H 0.22 1.54 7.04 -2.91 -0.02 1.52 16 40 H 0.17 0.78 6.74 -2.91 -0.02 0.76 16 41 H 0.18 -0.21 8.06 -2.91 -0.02 -0.23 16 42 H 0.17 0.26 8.06 -2.91 -0.02 0.24 16 43 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 44 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 45 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.08 3.32 6.79 -2.39 -0.02 3.31 16 Total: -1.00 -81.62 384.38 0.32 -81.30 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 0.97 Total: 6.85 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 6.11 Total: -1.97 kcal Atomic # 7 Polarization: -120.31 SS G_CDS: -9.48 Total: -129.79 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.70 Total: -4.03 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -81.62 0.32 -81.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614991835.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.064 kcal (2) G-P(sol) polarization free energy of solvation -81.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds