Wall clock time and date at job start Wed Apr 1 2020 04:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00167 * 2 1 4 4 H 1.48498 * 109.47106 * 270.00223 * 3 2 1 5 5 H 1.48504 * 109.46849 * 30.00278 * 3 2 1 6 6 H 1.48503 * 109.46988 * 149.99719 * 3 2 1 7 7 C 1.38812 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00151 * 163.07371 * 7 2 1 9 9 N 1.36937 * 119.99988 * 343.06245 * 7 2 1 10 10 C 1.46927 * 120.63140 * 331.84630 * 9 7 2 11 11 C 1.53198 * 108.77247 * 233.62802 * 10 9 7 12 12 C 1.53040 * 109.31129 * 305.36259 * 11 10 9 13 13 N 1.46904 * 109.45940 * 181.38570 * 12 11 10 14 14 C 1.46902 * 111.00028 * 154.99840 * 13 12 11 15 15 H 1.08997 * 109.46621 * 35.00194 * 14 13 12 16 16 C 1.50701 * 109.47098 * 275.00440 * 14 13 12 17 17 N 1.30496 * 125.64872 * 335.02013 * 16 14 13 18 18 C 1.34131 * 109.25604 * 180.02562 * 17 16 14 19 19 C 1.34677 * 108.01862 * 0.02562 * 18 17 16 20 20 N 1.35040 * 125.64963 * 154.72155 * 16 14 13 21 21 H 0.97001 * 126.39601 * 359.97438 * 20 16 14 22 22 C 1.50696 * 109.47002 * 155.00153 * 14 13 12 23 23 C 1.38249 * 119.97415 * 220.00014 * 22 14 13 24 24 C 1.38195 * 120.02516 * 179.97438 * 23 22 14 25 25 C 1.38460 * 119.97762 * 0.02562 * 24 23 22 26 26 F 1.35099 * 120.03132 * 179.97438 * 25 24 23 27 27 C 1.38465 * 119.94740 * 0.25185 * 25 24 23 28 28 C 1.38203 * 119.97031 * 359.47135 * 27 25 24 29 29 C 1.53035 * 109.53810 * 61.36903 * 12 11 10 30 30 C 1.46925 * 120.63022 * 151.86338 * 9 7 2 31 31 H 0.97003 * 120.00286 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.59080 * 113.84089 * 10 9 7 33 33 H 1.08998 * 109.70040 * 353.47664 * 10 9 7 34 34 H 1.09000 * 109.49539 * 185.41421 * 11 10 9 35 35 H 1.08998 * 109.49790 * 65.31380 * 11 10 9 36 36 H 1.08993 * 109.46106 * 301.35722 * 12 11 10 37 37 H 1.00909 * 110.99674 * 31.04937 * 13 12 11 38 38 H 1.08000 * 125.99404 * 180.02562 * 18 17 16 39 39 H 1.07995 * 126.58903 * 179.97438 * 19 18 17 40 40 H 1.07998 * 119.98834 * 0.02700 * 23 22 14 41 41 H 1.07999 * 120.01467 * 180.02562 * 24 23 22 42 42 H 1.07999 * 120.01792 * 179.74458 * 27 25 24 43 43 H 1.08001 * 119.98512 * 180.29517 * 28 27 25 44 44 H 1.08998 * 109.50355 * 58.58240 * 29 12 11 45 45 H 1.09005 * 109.49820 * 178.68397 * 29 12 11 46 46 H 1.09004 * 109.58843 * 246.15929 * 30 9 7 47 47 H 1.08998 * 109.58628 * 6.44441 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2223 -0.2729 9 7 1.3700 -2.3625 0.3444 10 6 0.2262 -2.3408 1.2663 11 6 0.4982 -3.3201 2.4127 12 6 0.8132 -4.7015 1.8342 13 7 1.0421 -5.6509 2.9315 14 6 0.7624 -7.0280 2.5032 15 1 1.0523 -7.1497 1.4596 16 6 -0.7104 -7.3109 2.6517 17 7 -1.5217 -6.7060 3.4756 18 6 -2.7548 -7.2148 3.3355 19 6 -2.7055 -8.1718 2.3891 20 7 -1.4102 -8.2284 1.9503 21 1 -1.0598 -8.8193 1.2655 22 6 1.5473 -7.9892 3.3581 23 6 2.1389 -9.0992 2.7843 24 6 2.8594 -9.9811 3.5672 25 6 2.9883 -9.7530 4.9268 26 9 3.6920 -10.6147 5.6933 27 6 2.3905 -8.6440 5.5013 28 6 1.6753 -7.7604 4.7154 29 6 2.0684 -4.6173 0.9627 30 6 1.8142 -3.6528 -0.2000 31 1 -0.4851 0.8400 -0.0004 32 1 -0.6769 -2.6417 0.7354 33 1 0.0966 -1.3357 1.6675 34 1 -0.3822 -3.3855 3.0519 35 1 1.3479 -2.9682 2.9977 36 1 -0.0268 -5.0418 1.2289 37 1 0.4933 -5.4059 3.7421 38 1 -3.6333 -6.9105 3.8851 39 1 -3.5305 -8.7750 2.0400 40 1 2.0387 -9.2768 1.7238 41 1 3.3218 -10.8480 3.1188 42 1 2.4868 -8.4672 6.5624 43 1 1.2129 -6.8928 5.1625 44 1 2.9034 -4.2533 1.5614 45 1 2.3056 -5.6061 0.5700 46 1 1.0406 -4.0607 -0.8506 47 1 2.7334 -3.5125 -0.7687 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615085879.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:37 Heat of formation + Delta-G solvation = 65.185224 kcal Electronic energy + Delta-G solvation = -30074.433181 eV Core-core repulsion = 25979.982880 eV Total energy + Delta-G solvation = -4094.450301 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.171 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.07003 -42.23012 -39.46158 -37.93643 -35.48611 -32.87622 -32.62557 -31.36988 -31.05423 -29.83542 -29.48990 -28.56095 -25.63373 -24.32525 -23.20677 -22.18815 -22.09292 -21.56244 -21.36589 -20.15290 -19.05304 -18.31508 -17.87179 -16.86469 -16.48349 -16.07142 -15.75999 -15.13121 -14.95357 -14.89407 -14.58730 -14.41169 -13.98265 -13.85415 -13.70798 -13.67106 -13.47238 -13.44443 -12.99813 -12.76711 -12.57808 -12.19486 -12.07220 -11.72684 -11.33319 -11.17059 -10.97659 -10.81376 -10.66146 -10.32793 -10.18515 -10.16630 -10.13607 -9.91217 -9.55903 -9.43847 -9.29302 -8.81944 -8.52334 -8.44719 -8.36218 -6.62691 -5.74972 -3.16929 0.90179 1.05801 1.91195 2.93203 3.02605 3.36752 3.40313 3.47359 3.50341 4.06246 4.18548 4.27340 4.53174 4.53714 4.65389 4.77375 4.89334 5.01059 5.08726 5.23393 5.29271 5.40882 5.46518 5.50550 5.58570 5.68229 5.71581 5.79827 5.90737 5.93361 5.97254 6.06276 6.16292 6.29414 6.39238 6.49787 6.53978 6.63748 6.67748 6.68742 6.74473 6.85489 7.05831 7.15030 7.28747 7.42889 7.58280 7.71270 7.83774 7.96952 8.49570 9.25667 9.89417 10.46381 11.33725 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013127 B = 0.002824 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.480116 B = 9911.867300 C =11198.841178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.250 4.250 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.176 3.824 11 C -0.139 4.139 12 C 0.100 3.900 13 N -0.661 5.661 14 C 0.213 3.787 15 H 0.100 0.900 16 C 0.187 3.813 17 N -0.481 5.481 18 C -0.023 4.023 19 C -0.058 4.058 20 N -0.563 5.563 21 H 0.417 0.583 22 C -0.075 4.075 23 C -0.087 4.087 24 C -0.156 4.156 25 C 0.094 3.906 26 F -0.143 7.143 27 C -0.155 4.155 28 C -0.052 4.052 29 C -0.118 4.118 30 C 0.146 3.854 31 H 0.253 0.747 32 H 0.014 0.986 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.035 0.965 37 H 0.357 0.643 38 H 0.169 0.831 39 H 0.175 0.825 40 H 0.129 0.871 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.066 0.934 45 H 0.043 0.957 46 H 0.012 0.988 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.345 -22.503 6.898 23.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.380 4.380 8 H 0.082 0.918 9 N -0.314 5.314 10 C 0.049 3.951 11 C -0.178 4.178 12 C -0.009 4.009 13 N -0.292 5.292 14 C 0.100 3.900 15 H 0.118 0.882 16 C -0.079 4.079 17 N -0.201 5.201 18 C -0.171 4.171 19 C -0.192 4.192 20 N -0.166 5.166 21 H 0.254 0.746 22 C -0.077 4.077 23 C -0.106 4.106 24 C -0.175 4.175 25 C 0.075 3.925 26 F -0.122 7.122 27 C -0.173 4.173 28 C -0.071 4.071 29 C -0.158 4.158 30 C 0.018 3.982 31 H 0.063 0.937 32 H 0.032 0.968 33 H 0.106 0.894 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.053 0.947 37 H 0.178 0.822 38 H 0.187 0.813 39 H 0.192 0.808 40 H 0.147 0.853 41 H 0.151 0.849 42 H 0.153 0.847 43 H 0.155 0.845 44 H 0.085 0.915 45 H 0.062 0.938 46 H 0.029 0.971 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.571 -21.732 7.388 22.960 hybrid contribution -0.760 -0.327 -0.831 1.173 sum -1.331 -22.058 6.557 23.051 Atomic orbital electron populations 1.70029 1.05277 1.25438 1.54101 1.25038 0.95265 0.98388 1.01007 0.86320 0.79230 0.83722 0.77644 1.21485 1.21587 1.20440 1.19176 0.92522 0.84836 1.41477 0.91752 1.44047 1.35861 1.01526 1.49962 1.20713 0.88462 0.98093 0.87788 1.22366 1.00396 0.94846 1.00241 1.21467 0.96529 0.91883 0.91009 1.60930 1.60331 0.98749 1.09229 1.18850 0.82102 0.90335 0.98721 0.88243 1.24316 0.97117 0.92152 0.94321 1.70046 1.01485 1.26379 1.22174 1.22325 0.95981 0.97814 1.01022 1.22761 0.87252 1.05959 1.03248 1.43256 1.08986 1.31709 1.32631 0.74577 1.19666 0.98663 0.94996 0.94329 1.20818 0.96547 0.93415 0.99792 1.21019 1.02584 1.01734 0.92117 1.17749 0.95666 0.89898 0.89199 1.91489 1.76569 1.68718 1.75424 1.21180 1.00312 0.94594 1.01258 1.20868 0.95630 0.97821 0.92747 1.22056 0.97498 0.98314 0.97961 1.20905 0.97405 0.87029 0.92815 0.93689 0.96789 0.89360 0.93185 0.91835 0.94668 0.82186 0.81331 0.80780 0.85271 0.84861 0.84739 0.84497 0.91498 0.93809 0.97051 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.47 11.19 55.49 0.62 -25.85 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.84 29.59 -169.99 -5.03 16.81 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.93 9.58 -15.06 -0.14 -7.07 16 8 H 0.06 1.75 7.89 -52.49 -0.41 1.33 16 9 N -0.59 -14.92 2.99 -172.31 -0.52 -15.43 16 10 C 0.18 4.25 5.30 -3.71 -0.02 4.23 16 11 C -0.14 -2.71 5.36 -26.61 -0.14 -2.85 16 12 C 0.10 1.68 2.26 -67.67 -0.15 1.53 16 13 N -0.66 -9.27 5.50 -102.14 -0.56 -9.83 16 14 C 0.21 2.47 2.54 -70.02 -0.18 2.30 16 15 H 0.10 1.09 6.96 -51.93 -0.36 0.72 16 16 C 0.19 2.24 6.74 -155.42 -1.05 1.19 16 17 N -0.48 -6.62 10.32 -10.81 -0.11 -6.73 16 18 C -0.02 -0.27 11.87 -17.81 -0.21 -0.48 16 19 C -0.06 -0.54 12.04 -16.56 -0.20 -0.74 16 20 N -0.56 -5.24 6.15 -10.23 -0.06 -5.30 16 21 H 0.42 2.57 8.96 -40.82 -0.37 2.21 16 22 C -0.07 -0.80 4.94 -104.62 -0.52 -1.31 16 23 C -0.09 -0.78 9.67 -39.59 -0.38 -1.16 16 24 C -0.16 -1.43 10.03 -39.52 -0.40 -1.83 16 25 C 0.09 0.99 7.30 -39.42 -0.29 0.71 16 26 F -0.14 -1.60 17.27 2.25 0.04 -1.56 16 27 C -0.15 -1.60 10.03 -39.51 -0.40 -2.00 16 28 C -0.05 -0.57 9.32 -39.59 -0.37 -0.94 16 29 C -0.12 -2.06 5.57 -26.61 -0.15 -2.21 16 30 C 0.15 3.05 6.52 -3.71 -0.02 3.03 16 31 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 2.39 6.06 -51.93 -0.31 2.08 16 34 H 0.05 0.92 8.10 -51.93 -0.42 0.50 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.04 0.64 7.63 -51.93 -0.40 0.24 16 37 H 0.36 5.18 6.72 -39.29 -0.26 4.92 16 38 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.13 0.83 8.04 -52.49 -0.42 0.41 16 41 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 42 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 43 H 0.14 1.52 7.24 -52.49 -0.38 1.14 16 44 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.04 0.65 7.41 -51.93 -0.38 0.27 16 46 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 47 H 0.05 1.12 7.93 -51.93 -0.41 0.71 16 LS Contribution 384.37 15.07 5.79 5.79 Total: -1.00 -32.16 384.37 -11.19 -43.35 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -6.65 Total: 6.40 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -4.70 Total: -7.66 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: -0.63 Total: -63.14 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.16 -11.19 -43.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615085879.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.535 kcal (2) G-P(sol) polarization free energy of solvation -32.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds