Wall clock time and date at job start Wed Apr 1 2020 04:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00167 * 2 1 4 4 H 1.48498 * 109.47106 * 270.00223 * 3 2 1 5 5 H 1.48504 * 109.46849 * 30.00278 * 3 2 1 6 6 H 1.48503 * 109.46988 * 149.99719 * 3 2 1 7 7 C 1.38812 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00151 * 163.07371 * 7 2 1 9 9 N 1.36937 * 119.99988 * 343.06245 * 7 2 1 10 10 C 1.46927 * 120.63140 * 331.84630 * 9 7 2 11 11 C 1.53198 * 108.77247 * 233.62802 * 10 9 7 12 12 C 1.53040 * 109.31129 * 305.36259 * 11 10 9 13 13 N 1.46904 * 109.45940 * 181.38570 * 12 11 10 14 14 C 1.46902 * 111.00028 * 154.99840 * 13 12 11 15 15 H 1.08997 * 109.46621 * 35.00194 * 14 13 12 16 16 C 1.50701 * 109.47098 * 275.00440 * 14 13 12 17 17 N 1.30496 * 125.64872 * 335.02013 * 16 14 13 18 18 C 1.34131 * 109.25604 * 180.02562 * 17 16 14 19 19 C 1.34677 * 108.01862 * 0.02562 * 18 17 16 20 20 N 1.35040 * 125.64963 * 154.72155 * 16 14 13 21 21 H 0.97001 * 126.39601 * 359.97438 * 20 16 14 22 22 C 1.50696 * 109.47002 * 155.00153 * 14 13 12 23 23 C 1.38249 * 119.97415 * 220.00014 * 22 14 13 24 24 C 1.38195 * 120.02516 * 179.97438 * 23 22 14 25 25 C 1.38460 * 119.97762 * 0.02562 * 24 23 22 26 26 F 1.35099 * 120.03132 * 179.97438 * 25 24 23 27 27 C 1.38465 * 119.94740 * 0.25185 * 25 24 23 28 28 C 1.38203 * 119.97031 * 359.47135 * 27 25 24 29 29 C 1.53035 * 109.53810 * 61.36903 * 12 11 10 30 30 C 1.46925 * 120.63022 * 151.86338 * 9 7 2 31 31 H 0.97003 * 120.00286 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.59080 * 113.84089 * 10 9 7 33 33 H 1.08998 * 109.70040 * 353.47664 * 10 9 7 34 34 H 1.09000 * 109.49539 * 185.41421 * 11 10 9 35 35 H 1.08998 * 109.49790 * 65.31380 * 11 10 9 36 36 H 1.08993 * 109.46106 * 301.35722 * 12 11 10 37 37 H 1.00909 * 110.99674 * 31.04937 * 13 12 11 38 38 H 1.08000 * 125.99404 * 180.02562 * 18 17 16 39 39 H 1.07995 * 126.58903 * 179.97438 * 19 18 17 40 40 H 1.07998 * 119.98834 * 0.02700 * 23 22 14 41 41 H 1.07999 * 120.01467 * 180.02562 * 24 23 22 42 42 H 1.07999 * 120.01792 * 179.74458 * 27 25 24 43 43 H 1.08001 * 119.98512 * 180.29517 * 28 27 25 44 44 H 1.08998 * 109.50355 * 58.58240 * 29 12 11 45 45 H 1.09005 * 109.49820 * 178.68397 * 29 12 11 46 46 H 1.09004 * 109.58843 * 246.15929 * 30 9 7 47 47 H 1.08998 * 109.58628 * 6.44441 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2223 -0.2729 9 7 1.3700 -2.3625 0.3444 10 6 0.2262 -2.3408 1.2663 11 6 0.4982 -3.3201 2.4127 12 6 0.8132 -4.7015 1.8342 13 7 1.0421 -5.6509 2.9315 14 6 0.7624 -7.0280 2.5032 15 1 1.0523 -7.1497 1.4596 16 6 -0.7104 -7.3109 2.6517 17 7 -1.5217 -6.7060 3.4756 18 6 -2.7548 -7.2148 3.3355 19 6 -2.7055 -8.1718 2.3891 20 7 -1.4102 -8.2284 1.9503 21 1 -1.0598 -8.8193 1.2655 22 6 1.5473 -7.9892 3.3581 23 6 2.1389 -9.0992 2.7843 24 6 2.8594 -9.9811 3.5672 25 6 2.9883 -9.7530 4.9268 26 9 3.6920 -10.6147 5.6933 27 6 2.3905 -8.6440 5.5013 28 6 1.6753 -7.7604 4.7154 29 6 2.0684 -4.6173 0.9627 30 6 1.8142 -3.6528 -0.2000 31 1 -0.4851 0.8400 -0.0004 32 1 -0.6769 -2.6417 0.7354 33 1 0.0966 -1.3357 1.6675 34 1 -0.3822 -3.3855 3.0519 35 1 1.3479 -2.9682 2.9977 36 1 -0.0268 -5.0418 1.2289 37 1 0.4933 -5.4059 3.7421 38 1 -3.6333 -6.9105 3.8851 39 1 -3.5305 -8.7750 2.0400 40 1 2.0387 -9.2768 1.7238 41 1 3.3218 -10.8480 3.1188 42 1 2.4868 -8.4672 6.5624 43 1 1.2129 -6.8928 5.1625 44 1 2.9034 -4.2533 1.5614 45 1 2.3056 -5.6061 0.5700 46 1 1.0406 -4.0607 -0.8506 47 1 2.7334 -3.5125 -0.7687 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615085879.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:36 Heat of formation + Delta-G solvation = 46.188717 kcal Electronic energy + Delta-G solvation = -30075.256931 eV Core-core repulsion = 25979.982880 eV Total energy + Delta-G solvation = -4095.274051 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.171 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.87833 -43.03287 -40.31073 -39.38830 -36.87562 -34.47950 -33.47666 -32.65183 -32.06637 -31.49863 -30.46594 -29.85367 -26.97775 -25.82382 -24.06412 -23.80148 -22.97980 -22.88516 -22.35149 -21.05115 -20.68530 -19.13017 -18.79220 -18.57749 -17.39839 -17.04490 -16.82877 -16.56767 -16.16833 -15.81631 -15.68831 -15.57347 -15.30359 -15.17488 -14.89292 -14.71117 -14.48903 -14.41197 -14.29897 -14.09223 -13.95305 -13.38730 -13.14950 -13.03380 -12.99726 -12.65390 -12.48716 -12.41430 -12.15095 -11.98544 -11.88988 -11.77149 -11.28226 -11.15153 -10.99920 -10.96764 -10.52816 -10.02311 -9.64663 -9.54649 -9.29912 -8.67472 -7.86454 -5.31552 0.12567 0.32980 1.14348 1.46931 1.49117 1.58928 2.17489 2.22912 2.52619 2.58364 3.12254 3.30743 3.31585 3.47607 3.70671 3.77445 3.86317 4.00059 4.02310 4.12239 4.20163 4.31918 4.39006 4.46834 4.52870 4.53810 4.57808 4.70892 4.72954 4.88306 4.95853 4.99857 5.01958 5.04024 5.13530 5.16714 5.18532 5.26866 5.29962 5.43073 5.55155 5.55400 5.66342 5.73259 5.81757 5.93561 6.07300 6.37356 6.40821 6.52228 7.15578 7.15915 7.87674 8.39639 9.20293 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013127 B = 0.002824 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.480116 B = 9911.867300 C =11198.841178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.052 4.052 3 Si 0.967 3.033 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.270 1.270 7 C -0.262 4.262 8 H 0.067 0.933 9 N -0.610 5.610 10 C 0.186 3.814 11 C -0.124 4.124 12 C 0.116 3.884 13 N -0.657 5.657 14 C 0.218 3.782 15 H 0.113 0.887 16 C 0.172 3.828 17 N -0.518 5.518 18 C -0.062 4.062 19 C -0.038 4.038 20 N -0.552 5.552 21 H 0.433 0.567 22 C -0.081 4.081 23 C -0.080 4.080 24 C -0.152 4.152 25 C 0.079 3.921 26 F -0.150 7.150 27 C -0.162 4.162 28 C -0.066 4.066 29 C -0.104 4.104 30 C 0.141 3.859 31 H 0.249 0.751 32 H -0.011 1.011 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.026 0.974 37 H 0.354 0.646 38 H 0.177 0.823 39 H 0.212 0.788 40 H 0.161 0.839 41 H 0.157 0.843 42 H 0.142 0.858 43 H 0.128 0.872 44 H 0.057 0.943 45 H 0.080 0.920 46 H 0.010 0.990 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.469 -24.964 6.157 25.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.247 4.247 3 Si 0.794 3.206 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.195 1.195 7 C -0.392 4.392 8 H 0.085 0.915 9 N -0.333 5.333 10 C 0.059 3.941 11 C -0.164 4.164 12 C 0.007 3.993 13 N -0.288 5.288 14 C 0.105 3.895 15 H 0.131 0.869 16 C -0.095 4.095 17 N -0.238 5.238 18 C -0.209 4.209 19 C -0.173 4.173 20 N -0.157 5.157 21 H 0.274 0.726 22 C -0.083 4.083 23 C -0.099 4.099 24 C -0.170 4.170 25 C 0.059 3.941 26 F -0.129 7.129 27 C -0.180 4.180 28 C -0.084 4.084 29 C -0.143 4.143 30 C 0.015 3.985 31 H 0.058 0.942 32 H 0.007 0.993 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.044 0.956 37 H 0.175 0.825 38 H 0.195 0.805 39 H 0.229 0.771 40 H 0.179 0.821 41 H 0.174 0.826 42 H 0.160 0.840 43 H 0.146 0.854 44 H 0.075 0.925 45 H 0.098 0.902 46 H 0.028 0.972 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.334 -24.243 6.637 25.137 hybrid contribution -1.086 0.351 -0.608 1.294 sum -0.752 -23.892 6.029 24.652 Atomic orbital electron populations 1.70187 1.06743 1.25799 1.55582 1.25808 0.96020 1.01557 1.01349 0.85293 0.78113 0.79554 0.77598 1.21024 1.21983 1.19488 1.19523 0.92869 0.86057 1.40725 0.91489 1.44312 1.35820 1.02537 1.50656 1.20448 0.87582 0.97327 0.88738 1.22108 1.00358 0.95584 0.98323 1.21136 0.95912 0.90821 0.91458 1.60836 1.60317 0.99659 1.07966 1.18859 0.82365 0.88763 0.99499 0.86915 1.24209 0.97163 0.93145 0.94971 1.69960 1.02696 1.27724 1.23445 1.22704 0.95917 0.99404 1.02865 1.23304 0.87847 1.04664 1.01454 1.43219 1.08797 1.31213 1.32439 0.72645 1.19659 0.99069 0.95596 0.93974 1.21113 0.95242 0.92236 1.01277 1.21310 1.01985 1.02318 0.91434 1.17986 0.96081 0.89998 0.89989 1.91471 1.76774 1.68884 1.75741 1.21280 1.00325 0.94659 1.01786 1.20867 0.96289 0.97941 0.93343 1.21866 0.97087 0.98989 0.96398 1.21082 0.97212 0.85940 0.94246 0.94175 0.99306 0.92933 0.92549 0.92519 0.95624 0.82524 0.80533 0.77109 0.82144 0.82581 0.84028 0.85445 0.92454 0.90174 0.97156 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.60 11.19 21.65 0.24 -56.36 16 2 C -0.05 -2.97 4.92 84.86 0.42 -2.56 16 3 Si 0.97 45.57 29.59 68.60 2.03 47.60 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.26 -14.64 9.58 84.03 0.81 -13.83 16 8 H 0.07 3.64 7.89 -2.91 -0.02 3.61 16 9 N -0.61 -31.22 2.99 -699.08 -2.09 -33.31 16 10 C 0.19 9.29 5.30 86.36 0.46 9.75 16 11 C -0.12 -4.91 5.36 30.67 0.16 -4.75 16 12 C 0.12 3.80 2.26 44.94 0.10 3.90 16 13 N -0.66 -17.62 5.50 -477.06 -2.62 -20.24 16 14 C 0.22 4.57 2.54 43.42 0.11 4.68 16 15 H 0.11 2.04 6.96 -2.39 -0.02 2.03 16 16 C 0.17 3.81 6.74 138.13 0.93 4.74 16 17 N -0.52 -13.95 10.32 -188.13 -1.94 -15.90 16 18 C -0.06 -1.37 11.87 83.52 0.99 -0.38 16 19 C -0.04 -0.60 12.04 83.09 1.00 0.40 16 20 N -0.55 -8.73 6.15 -186.27 -1.15 -9.88 16 21 H 0.43 3.76 8.96 -92.71 -0.83 2.93 16 22 C -0.08 -1.55 4.94 -19.86 -0.10 -1.65 16 23 C -0.08 -1.16 9.67 22.26 0.22 -0.94 16 24 C -0.15 -2.33 10.03 22.31 0.22 -2.11 16 25 C 0.08 1.53 7.30 22.38 0.16 1.69 16 26 F -0.15 -3.16 17.27 44.97 0.78 -2.38 16 27 C -0.16 -3.21 10.03 22.32 0.22 -2.99 16 28 C -0.07 -1.39 9.32 22.26 0.21 -1.18 16 29 C -0.10 -3.42 5.57 30.67 0.17 -3.25 16 30 C 0.14 5.81 6.52 86.36 0.56 6.38 16 31 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 32 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 33 H 0.05 2.99 6.06 -2.39 -0.01 2.97 16 34 H 0.06 2.13 8.10 -2.39 -0.02 2.11 16 35 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.03 0.90 7.63 -2.39 -0.02 0.89 16 37 H 0.35 10.18 6.72 -89.69 -0.60 9.58 16 38 H 0.18 3.32 8.06 -2.91 -0.02 3.29 16 39 H 0.21 1.61 8.06 -2.91 -0.02 1.59 16 40 H 0.16 1.26 8.04 -2.91 -0.02 1.24 16 41 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 42 H 0.14 2.45 8.06 -2.91 -0.02 2.42 16 43 H 0.13 2.86 7.24 -2.91 -0.02 2.84 16 44 H 0.06 2.03 8.14 -2.39 -0.02 2.02 16 45 H 0.08 2.09 7.41 -2.38 -0.02 2.07 16 46 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.06 2.30 7.93 -2.39 -0.02 2.28 16 Total: -1.00 -71.71 384.37 1.47 -70.24 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -0.43 Total: 22.31 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: 6.65 Total: -2.08 kcal Atomic # 7 Polarization: -128.12 SS G_CDS: -7.56 Total: -135.68 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.78 Total: -2.38 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -71.71 1.47 -70.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615085879.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.428 kcal (2) G-P(sol) polarization free energy of solvation -71.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds