Wall clock time and date at job start Wed Apr 1 2020 03:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47270 * 2 1 4 4 C 1.46496 * 120.00154 * 272.57192 * 3 2 1 5 5 C 1.53004 * 109.47211 * 82.24106 * 4 3 2 6 6 H 1.08999 * 109.46729 * 306.13659 * 5 4 3 7 7 C 1.52999 * 109.46963 * 66.13025 * 5 4 3 8 8 C 1.47197 * 109.47314 * 186.13387 * 5 4 3 9 9 N 5.54352 * 86.11333 * 311.87470 * 2 1 3 10 10 S 1.65597 * 119.99820 * 92.57202 * 3 2 1 11 11 O 1.42102 * 106.40403 * 330.92235 * 10 3 2 12 12 O 1.42102 * 106.40446 * 198.00155 * 10 3 2 13 13 N 1.65599 * 107.21879 * 84.46495 * 10 3 2 14 14 C 1.46499 * 120.00185 * 62.69184 * 13 10 3 15 15 C 1.53075 * 109.44253 * 94.00865 * 14 13 10 16 16 C 1.53195 * 109.29354 * 181.23900 * 15 14 13 17 17 N 1.46926 * 108.88956 * 305.57492 * 16 15 14 18 18 C 1.36935 * 120.62679 * 233.51496 * 17 16 15 19 19 H 1.08005 * 119.99641 * 147.75345 * 18 17 16 20 20 C 1.38810 * 120.00661 * 327.74850 * 18 17 16 21 21 N 1.31622 * 119.99515 * 345.75134 * 20 18 17 22 22 Si 1.86795 * 120.00332 * 165.74287 * 20 18 17 23 23 H 1.48499 * 109.47112 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46891 * 120.00308 * 22 20 18 25 25 H 1.48493 * 109.47256 * 240.00405 * 22 20 18 26 26 C 1.46926 * 118.74161 * 53.54244 * 17 16 15 27 27 C 1.53047 * 109.46129 * 214.21265 * 14 13 10 28 28 H 1.09004 * 109.47057 * 60.00067 * 1 2 3 29 29 H 1.08998 * 109.46767 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46990 * 300.00295 * 1 2 3 31 31 H 1.09008 * 109.47223 * 240.00220 * 2 1 3 32 32 H 1.09001 * 109.47163 * 120.00466 * 2 1 3 33 33 H 1.09001 * 109.47509 * 202.23999 * 4 3 2 34 34 H 1.09001 * 109.47065 * 322.24165 * 4 3 2 35 35 H 1.08994 * 109.47206 * 178.89749 * 7 5 4 36 36 H 1.09000 * 109.47395 * 298.90358 * 7 5 4 37 37 H 1.09002 * 109.47097 * 58.89850 * 7 5 4 38 38 H 0.97006 * 120.00231 * 242.68924 * 13 10 3 39 39 H 1.09003 * 109.45951 * 334.18432 * 14 13 10 40 40 H 1.08996 * 109.38911 * 61.35978 * 15 14 13 41 41 H 1.09004 * 109.61693 * 301.25046 * 15 14 13 42 42 H 1.08996 * 109.58409 * 185.71707 * 16 15 14 43 43 H 1.09000 * 109.58866 * 65.43205 * 16 15 14 44 44 H 0.97001 * 119.99650 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.58818 * 66.17369 * 26 17 16 46 46 H 1.08996 * 109.58626 * 186.45939 * 26 17 16 47 47 H 1.08996 * 109.49431 * 58.67323 * 27 14 13 48 48 H 1.09005 * 109.51872 * 298.59696 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2089 2.0908 -1.2674 5 6 0.8687 2.6563 -1.7418 6 1 0.1299 1.8558 -1.7806 7 6 0.3979 3.7379 -0.7674 8 6 1.0298 3.2407 -3.0831 9 7 1.1542 3.6918 -4.1182 10 16 2.3550 2.1404 1.4327 11 8 1.4939 1.5633 2.4047 12 8 2.3867 3.5329 1.1513 13 7 3.8967 1.7151 1.8624 14 6 5.0254 2.0896 1.0067 15 6 5.6206 3.4115 1.4981 16 6 6.7806 3.8156 0.5827 17 7 7.7415 2.7062 0.5146 18 6 9.0657 2.9121 0.7961 19 1 9.6503 2.1248 1.2488 20 6 9.6569 4.1326 0.4997 21 7 9.0440 4.9850 -0.2941 22 14 11.3219 4.5652 1.2275 23 1 11.7956 3.4454 2.0800 24 1 12.2959 4.7982 0.1309 25 1 11.1983 5.7957 2.0495 26 6 7.2549 1.3720 0.1383 27 6 6.0918 0.9932 1.0605 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.9172 2.9068 -1.1241 34 1 2.5971 1.3999 -2.0158 35 1 -0.5471 4.1544 -1.1158 36 1 0.2598 3.3008 0.2216 37 1 1.1458 4.5290 -0.7137 38 1 4.0526 1.2179 2.6807 39 1 4.6788 2.2090 -0.0198 40 1 5.9875 3.2866 2.5168 41 1 4.8549 4.1871 1.4791 42 1 7.2725 4.7010 0.9854 43 1 6.4001 4.0312 -0.4157 44 1 9.4569 5.8380 -0.5010 45 1 6.9112 1.3867 -0.8961 46 1 8.0604 0.6456 0.2453 47 1 5.6592 0.0485 0.7312 48 1 6.4566 0.8897 2.0825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619709524.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:13 Heat of formation + Delta-G solvation = -56.384739 kcal Electronic energy + Delta-G solvation = -30095.283342 eV Core-core repulsion = 26118.632533 eV Total energy + Delta-G solvation = -3976.650808 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.55469 -39.25309 -38.26299 -37.28533 -36.86081 -36.17324 -34.12411 -33.65366 -31.60378 -31.07553 -30.75487 -27.40094 -26.69524 -24.37078 -23.78102 -23.51295 -23.30290 -21.14555 -20.26860 -19.09877 -18.91117 -18.51259 -17.89554 -17.39933 -16.85470 -16.42069 -16.07101 -15.62366 -15.30420 -15.27738 -15.15803 -14.72757 -14.69728 -14.53908 -14.41955 -14.18454 -13.96039 -13.82274 -13.62667 -13.37501 -13.20496 -13.08970 -13.00101 -12.97842 -12.80908 -12.66114 -12.64852 -12.59698 -12.52887 -12.16485 -12.13260 -11.98930 -11.87823 -11.76076 -11.58420 -11.41739 -11.15916 -10.59271 -10.29334 -10.16293 -8.59950 -7.85454 -5.35075 -0.40349 1.46629 1.49202 1.58776 1.68586 1.76476 1.90855 2.51958 2.52627 2.93986 3.31170 3.41605 3.64186 3.73772 3.84588 3.89503 4.05167 4.13994 4.16925 4.30442 4.33152 4.46032 4.53580 4.56825 4.68977 4.75543 4.76390 4.78312 4.87571 4.88680 5.00897 5.06967 5.10148 5.18748 5.24301 5.30204 5.35488 5.37916 5.44673 5.52799 5.58247 5.64784 5.68853 5.77359 6.16392 6.44317 6.55053 7.18618 7.89283 8.41607 9.20647 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.014759 B = 0.003327 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.740966 B = 8413.748732 C = 9264.135787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.112 3.888 3 N -0.992 5.992 4 C 0.122 3.878 5 C -0.010 4.010 6 H 0.155 0.845 7 C -0.149 4.149 8 C 0.241 3.759 9 N -0.485 5.485 10 S 2.790 3.210 11 O -0.999 6.999 12 O -0.994 6.994 13 N -1.115 6.115 14 C 0.173 3.827 15 C -0.148 4.148 16 C 0.182 3.818 17 N -0.610 5.610 18 C -0.262 4.262 19 H 0.067 0.933 20 C -0.047 4.047 21 N -0.934 5.934 22 Si 0.963 3.037 23 H -0.264 1.264 24 H -0.293 1.293 25 H -0.293 1.293 26 C 0.139 3.861 27 C -0.123 4.123 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.046 0.954 31 H 0.112 0.888 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.119 0.881 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.421 0.579 39 H 0.085 0.915 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.043 0.957 43 H 0.001 0.999 44 H 0.248 0.752 45 H 0.022 0.978 46 H 0.059 0.941 47 H 0.098 0.902 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.283 -13.936 1.665 23.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.012 4.012 3 N -0.832 5.832 4 C -0.005 4.005 5 C -0.032 4.032 6 H 0.172 0.828 7 C -0.207 4.207 8 C -0.077 4.077 9 N -0.161 5.161 10 S 2.799 3.201 11 O -0.983 6.983 12 O -0.977 6.977 13 N -0.876 5.876 14 C 0.066 3.934 15 C -0.189 4.189 16 C 0.056 3.944 17 N -0.334 5.334 18 C -0.392 4.392 19 H 0.085 0.915 20 C -0.243 4.243 21 N -0.580 5.580 22 Si 0.791 3.209 23 H -0.188 1.188 24 H -0.220 1.220 25 H -0.220 1.220 26 C 0.013 3.987 27 C -0.163 4.163 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.130 0.870 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.137 0.863 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.256 0.744 39 H 0.103 0.897 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.019 0.981 44 H 0.057 0.943 45 H 0.040 0.960 46 H 0.078 0.922 47 H 0.117 0.883 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.656 -12.471 0.388 23.282 hybrid contribution 1.398 0.477 0.785 1.672 sum -18.258 -11.994 1.173 21.877 Atomic orbital electron populations 1.22424 0.95540 1.03657 1.02492 1.21580 0.94982 0.79511 1.05116 1.57715 1.80075 1.24869 1.20591 1.21444 0.94868 0.97750 0.86451 1.19629 1.01701 0.99409 0.82500 0.82807 1.21914 1.02826 0.98280 0.97708 1.29301 0.91895 0.92260 0.94275 1.81284 1.09840 1.10662 1.14328 1.01677 0.72480 0.73236 0.72739 1.93589 1.64769 1.79548 1.60372 1.93635 1.86932 1.32221 1.84924 1.55866 1.23287 1.73329 1.35076 1.20523 0.86212 0.93984 0.92662 1.22569 0.98251 0.97917 1.00210 1.20454 0.88258 0.91088 0.94639 1.44298 1.04106 1.05290 1.79722 1.19509 0.87233 0.99643 1.32838 0.91548 1.25882 1.01039 0.99173 0.98230 1.70166 1.40547 1.09646 1.37612 0.85281 0.80111 0.77832 0.77666 1.18829 1.22001 1.22047 1.21098 0.95421 0.86730 0.95406 1.22181 0.95145 0.97863 1.01111 0.90769 0.89799 0.93491 0.87023 0.89921 0.89973 0.86338 0.90151 0.92178 0.91883 0.74380 0.89745 0.92665 0.91827 0.93800 0.98099 0.94253 0.96020 0.92213 0.88318 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 10.03 71.98 0.72 -0.78 16 2 C 0.11 0.97 6.04 86.38 0.52 1.49 16 3 N -0.99 -13.89 2.57 -515.77 -1.33 -15.22 16 4 C 0.12 1.69 4.54 86.38 0.39 2.09 16 5 C -0.01 -0.13 2.81 -12.60 -0.04 -0.16 16 6 H 0.15 1.01 5.44 -2.39 -0.01 1.00 16 7 C -0.15 -2.48 7.71 71.98 0.56 -1.92 16 8 C 0.24 4.70 14.64 89.44 1.31 6.01 16 9 N -0.48 -12.92 18.54 20.00 0.37 -12.55 16 10 S 2.79 60.79 5.04 -56.49 -0.28 60.50 16 11 O -1.00 -25.28 16.93 -128.00 -2.17 -27.45 16 12 O -0.99 -27.89 13.41 -128.00 -1.72 -29.60 16 13 N -1.12 -23.89 5.53 -169.22 -0.94 -24.82 16 14 C 0.17 4.70 2.67 45.03 0.12 4.82 16 15 C -0.15 -5.40 5.70 30.68 0.17 -5.23 16 16 C 0.18 8.57 5.25 86.36 0.45 9.02 16 17 N -0.61 -29.06 2.98 -699.10 -2.08 -31.14 16 18 C -0.26 -13.96 9.55 84.03 0.80 -13.15 16 19 H 0.07 3.43 7.87 -2.91 -0.02 3.41 16 20 C -0.05 -2.62 4.95 84.86 0.42 -2.20 16 21 N -0.93 -55.10 11.34 21.65 0.25 -54.86 16 22 Si 0.96 44.44 29.58 68.60 2.03 46.47 16 23 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 24 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 25 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 26 C 0.14 5.06 6.52 86.36 0.56 5.63 16 27 C -0.12 -3.24 5.61 30.67 0.17 -3.07 16 28 H 0.07 0.39 5.54 -2.39 -0.01 0.38 16 29 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.05 0.60 7.70 -2.39 -0.02 0.59 16 31 H 0.11 0.39 8.00 -2.38 -0.02 0.37 16 32 H 0.08 0.72 7.84 -2.39 -0.02 0.70 16 33 H 0.08 1.50 6.68 -2.39 -0.02 1.49 16 34 H 0.12 1.05 8.01 -2.39 -0.02 1.03 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.06 1.04 6.27 -2.39 -0.01 1.02 16 37 H 0.06 1.35 7.59 -2.39 -0.02 1.34 16 38 H 0.42 7.62 8.83 -96.74 -0.85 6.77 16 39 H 0.08 2.15 6.92 -2.39 -0.02 2.13 16 40 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.06 2.32 7.53 -2.38 -0.02 2.30 16 42 H 0.04 2.40 6.30 -2.39 -0.02 2.38 16 43 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 44 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 45 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.06 2.13 7.93 -2.39 -0.02 2.11 16 47 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -74.74 387.02 0.42 -74.32 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.12 Total: 11.80 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 6.17 Total: 2.55 kcal Atomic # 7 Polarization: -134.86 SS G_CDS: -3.73 Total: -138.58 kcal Atomic # 8 Polarization: -53.17 SS G_CDS: -3.88 Total: -57.05 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 16 Polarization: 60.79 SS G_CDS: -0.28 Total: 60.50 kcal Total: -74.74 0.42 -74.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619709524.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.935 kcal (2) G-P(sol) polarization free energy of solvation -74.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds