Wall clock time and date at job start Wed Apr 1 2020 03:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00266 * 2 1 4 4 C 1.52995 * 109.47584 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47389 * 179.97438 * 4 3 2 6 6 N 1.46898 * 109.47501 * 180.02562 * 5 4 3 7 7 C 1.46901 * 110.99693 * 66.04680 * 6 5 4 8 8 C 1.53000 * 109.46950 * 199.79317 * 7 6 5 9 9 O 1.42905 * 109.46875 * 65.29122 * 8 7 6 10 10 C 1.42902 * 113.99851 * 179.97438 * 9 8 7 11 11 C 1.46899 * 111.00275 * 190.00327 * 6 5 4 12 12 N 1.46498 * 109.47157 * 74.72362 * 11 6 5 13 13 N 1.40169 * 126.14372 * 265.09010 * 12 11 6 14 14 C 1.32247 * 107.75348 * 179.76239 * 13 12 11 15 15 C 1.40122 * 125.92111 * 180.29361 * 14 13 12 16 16 H 1.07997 * 119.99745 * 180.16087 * 15 14 13 17 17 C 1.40035 * 120.00123 * 0.15882 * 15 14 13 18 18 N 1.30791 * 120.00217 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99822 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47263 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47609 * 120.00062 * 19 17 15 22 22 H 1.48510 * 109.46911 * 239.99989 * 19 17 15 23 23 N 1.38492 * 108.15102 * 0.42838 * 14 13 12 24 24 C 1.46496 * 125.83722 * 179.82332 * 23 14 13 25 25 C 1.34732 * 108.32739 * 359.56374 * 23 14 13 26 26 S 1.71199 * 125.97100 * 180.26344 * 25 23 14 27 27 H 1.09006 * 109.47226 * 299.99618 * 1 2 3 28 28 H 1.08996 * 109.47295 * 59.99871 * 1 2 3 29 29 H 1.09005 * 109.47203 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46818 * 59.99579 * 3 2 1 31 31 H 1.09005 * 109.46984 * 300.00352 * 3 2 1 32 32 H 1.08998 * 109.46891 * 60.00147 * 4 3 2 33 33 H 1.09005 * 109.47326 * 300.00238 * 4 3 2 34 34 H 1.09002 * 109.47261 * 60.00383 * 5 4 3 35 35 H 1.08996 * 109.47396 * 300.00773 * 5 4 3 36 36 H 1.08992 * 109.47359 * 319.79107 * 7 6 5 37 37 H 1.08994 * 109.46959 * 79.79707 * 7 6 5 38 38 H 1.08998 * 109.47521 * 185.28812 * 8 7 6 39 39 H 1.08998 * 109.47688 * 305.29057 * 8 7 6 40 40 H 1.08996 * 109.47168 * 299.99911 * 10 9 8 41 41 H 1.09009 * 109.46974 * 60.00265 * 10 9 8 42 42 H 1.08995 * 109.47103 * 179.97438 * 10 9 8 43 43 H 1.09001 * 109.47217 * 314.72213 * 11 6 5 44 44 H 1.09004 * 109.47139 * 194.72458 * 11 6 5 45 45 H 0.97006 * 120.00082 * 179.97438 * 18 17 15 46 46 H 1.08995 * 109.47185 * 269.71840 * 24 23 14 47 47 H 1.09008 * 109.47198 * 149.71697 * 24 23 14 48 48 H 1.08998 * 109.46933 * 29.71926 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5824 0.0000 6 7 5.6221 2.4665 0.0000 7 6 6.1029 1.8693 -1.2531 8 6 7.5134 1.3141 -1.0452 9 8 7.4670 0.2332 -0.1116 10 6 8.7395 -0.3601 0.1543 11 6 6.2536 3.7714 0.2376 12 7 6.1167 4.1299 1.6514 13 7 5.1088 4.9294 2.2078 14 6 5.3317 5.0121 3.5087 15 6 4.5489 5.7157 4.4337 16 1 4.8219 5.7210 5.4786 17 6 3.4127 6.4120 4.0034 18 7 3.0824 6.4060 2.7379 19 14 2.3697 7.3505 5.2365 20 1 2.9533 7.2010 6.5938 21 1 2.3388 8.7882 4.8662 22 1 0.9873 6.8078 5.2301 23 7 6.4746 4.2853 3.7977 24 6 7.0738 4.1207 5.1243 25 6 6.9380 3.7508 2.6510 26 16 8.3269 2.7628 2.4913 27 1 -0.3634 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.6885 1.8463 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8574 0.6436 -0.8891 33 1 3.8567 0.6439 0.8909 34 1 3.8358 3.1239 0.8896 35 1 3.8364 3.1228 -0.8903 36 1 5.4346 1.0612 -1.5504 37 1 6.1232 2.6298 -2.0336 38 1 7.9067 0.9558 -1.9965 39 1 8.1603 2.1012 -0.6579 40 1 9.1578 -0.7532 -0.7722 41 1 9.4122 0.3922 0.5664 42 1 8.6192 -1.1715 0.8721 43 1 5.7669 4.5280 -0.3778 44 1 7.3107 3.7163 -0.0226 45 1 2.2951 6.8880 2.4398 46 1 7.7988 4.9161 5.2968 47 1 7.5749 3.1542 5.1793 48 1 6.2936 4.1692 5.8839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794622272.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:28 Heat of formation + Delta-G solvation = -19.890991 kcal Electronic energy + Delta-G solvation = -29472.409110 eV Core-core repulsion = 25497.340790 eV Total energy + Delta-G solvation = -3975.068321 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.54278 -39.73090 -38.83103 -37.89297 -35.98542 -35.50943 -33.59865 -32.39069 -30.73930 -29.24496 -28.22565 -27.74475 -26.93314 -26.28425 -24.81500 -23.51180 -22.83095 -22.59577 -21.50462 -19.45571 -18.48014 -17.63051 -17.59132 -17.36736 -17.16019 -17.09931 -16.81308 -16.46581 -16.34491 -16.11362 -15.83851 -15.41821 -15.14144 -15.04184 -14.99054 -14.12385 -13.82197 -13.65142 -13.40666 -13.40177 -13.26820 -13.05530 -13.02169 -12.71567 -12.63052 -12.56352 -12.38111 -12.29057 -12.06608 -11.95485 -11.77807 -11.75553 -11.55739 -11.31295 -10.84092 -10.68708 -10.61305 -10.30704 -9.37403 -8.74813 -8.50150 -8.36289 -6.92564 0.63677 0.96613 1.28038 1.44843 1.60656 1.77421 1.87714 2.14279 2.44902 2.57679 3.04960 3.11446 3.14266 3.62702 3.83976 3.98572 4.07906 4.11533 4.12867 4.25898 4.36739 4.37919 4.45351 4.47212 4.48331 4.49518 4.55915 4.59221 4.60662 4.67623 4.70844 4.72140 4.77508 4.79299 4.96793 4.98942 5.02133 5.11806 5.13893 5.16838 5.33228 5.77224 5.85979 6.02486 6.16290 6.22806 6.52910 6.55068 6.60957 7.39604 8.26346 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.007481 B = 0.004830 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3742.121841 B = 5795.850578 C = 8572.306721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.070 3.930 4 C -0.096 4.096 5 C 0.071 3.929 6 N -0.548 5.548 7 C 0.061 3.939 8 C 0.069 3.931 9 O -0.391 6.391 10 C 0.044 3.956 11 C 0.326 3.674 12 N -0.375 5.375 13 N -0.369 5.369 14 C 0.354 3.646 15 C -0.453 4.453 16 H 0.114 0.886 17 C 0.039 3.961 18 N -0.774 5.774 19 Si 1.002 2.998 20 H -0.247 1.247 21 H -0.268 1.268 22 H -0.269 1.269 23 N -0.523 5.523 24 C 0.098 3.902 25 C 0.465 3.535 26 S -0.718 6.718 27 H 0.041 0.959 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.036 0.964 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.037 0.963 40 H 0.053 0.947 41 H 0.024 0.976 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.106 0.894 45 H 0.291 0.709 46 H 0.080 0.920 47 H 0.086 0.914 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.848 -3.989 -6.029 8.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C -0.007 4.007 4 C -0.133 4.133 5 C -0.057 4.057 6 N -0.274 5.274 7 C -0.066 4.066 8 C -0.008 4.008 9 O -0.309 6.309 10 C -0.053 4.053 11 C 0.115 3.885 12 N -0.161 5.161 13 N -0.202 5.202 14 C 0.105 3.895 15 C -0.495 4.495 16 H 0.132 0.868 17 C -0.184 4.184 18 N -0.399 5.399 19 Si 0.821 3.179 20 H -0.170 1.170 21 H -0.192 1.192 22 H -0.194 1.194 23 N -0.224 5.224 24 C -0.044 4.044 25 C 0.096 3.904 26 S -0.594 6.594 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.120 0.880 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.116 0.884 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.043 0.957 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.123 0.877 45 H 0.101 0.899 46 H 0.099 0.901 47 H 0.105 0.895 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.709 -4.763 -6.713 9.029 hybrid contribution -0.641 1.509 0.578 1.739 sum -4.350 -3.254 -6.135 8.195 Atomic orbital electron populations 1.22944 0.79416 1.03971 1.00752 1.87824 1.21633 1.28406 1.95580 1.22389 0.93496 0.84372 1.00429 1.21297 0.92808 0.96427 1.02807 1.21845 0.86559 0.96405 1.00857 1.61456 1.06017 1.22609 1.37311 1.22263 0.96371 0.99267 0.88676 1.22566 0.96619 0.89462 0.92152 1.87925 1.29573 1.48971 1.64461 1.22578 0.85588 0.97050 1.00038 1.21766 1.00859 0.90227 0.75667 1.49448 1.20202 1.38669 1.07802 1.79214 1.11310 1.23870 1.05779 1.21646 0.84589 0.91191 0.92081 1.18891 1.07776 1.27907 0.94909 0.86790 1.26790 0.97817 0.95896 0.97938 1.69962 1.22298 1.30493 1.17139 0.84829 0.77254 0.77419 0.78372 1.16969 1.19242 1.19373 1.46242 1.24276 1.43100 1.08772 1.21959 0.99448 1.03946 0.79038 1.22976 0.93110 0.90410 0.83937 1.92498 1.21432 1.51635 1.93878 0.94037 0.92669 0.88016 0.94590 0.91544 0.89887 0.93555 0.93049 0.93151 0.88438 0.90382 0.90900 0.94512 0.92810 0.95724 0.90506 0.90902 0.87669 0.89877 0.90126 0.89521 0.87925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.76 16 2 O -0.41 -11.97 10.70 -148.98 -1.59 -13.56 16 3 C 0.07 2.01 5.94 71.98 0.43 2.44 16 4 C -0.10 -3.01 5.56 30.59 0.17 -2.84 16 5 C 0.07 2.43 4.84 86.30 0.42 2.84 16 6 N -0.55 -19.23 4.50 -908.61 -4.09 -23.32 16 7 C 0.06 1.64 5.22 86.30 0.45 2.09 16 8 C 0.07 1.98 6.12 71.98 0.44 2.42 16 9 O -0.39 -13.59 10.65 -148.98 -1.59 -15.17 16 10 C 0.04 1.32 11.01 113.37 1.25 2.57 16 11 C 0.33 12.51 5.70 170.81 0.97 13.49 16 12 N -0.37 -17.53 3.51 -359.72 -1.26 -18.79 16 13 N -0.37 -18.77 10.10 -55.17 -0.56 -19.32 16 14 C 0.35 17.50 7.50 133.52 1.00 18.50 16 15 C -0.45 -20.80 8.98 23.16 0.21 -20.59 16 16 H 0.11 4.64 7.11 -2.91 -0.02 4.62 16 17 C 0.04 1.69 5.50 85.28 0.47 2.16 16 18 N -0.77 -36.56 11.90 21.84 0.26 -36.30 16 19 Si 1.00 32.57 29.56 68.60 2.03 34.60 16 20 H -0.25 -7.51 7.11 99.48 0.71 -6.80 16 21 H -0.27 -8.53 7.11 99.48 0.71 -7.83 16 22 H -0.27 -8.62 7.11 99.48 0.71 -7.91 16 23 N -0.52 -24.09 3.17 -548.31 -1.74 -25.83 16 24 C 0.10 3.52 10.65 127.77 1.36 4.88 16 25 C 0.47 22.58 7.84 179.06 1.40 23.98 16 26 S -0.72 -35.17 29.60 -56.49 -1.67 -36.84 16 27 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.08 2.34 6.25 -2.39 -0.01 2.33 16 33 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.05 2.21 7.13 -2.39 -0.02 2.20 16 35 H 0.05 1.50 8.12 -2.39 -0.02 1.48 16 36 H 0.10 2.44 5.88 -2.39 -0.01 2.42 16 37 H 0.08 1.64 8.00 -2.39 -0.02 1.62 16 38 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.04 1.21 6.65 -2.39 -0.02 1.19 16 40 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.07 2.63 8.01 -2.39 -0.02 2.61 16 44 H 0.11 3.99 6.12 -2.38 -0.01 3.97 16 45 H 0.29 12.35 8.30 -92.70 -0.77 11.58 16 46 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 47 H 0.09 3.16 7.61 -2.38 -0.02 3.14 16 48 H 0.10 3.21 7.31 -2.39 -0.02 3.19 16 Total: -1.00 -67.34 406.90 0.56 -66.79 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: 0.95 Total: 34.06 kcal Atomic # 6 Polarization: 43.88 SS G_CDS: 9.82 Total: 53.70 kcal Atomic # 7 Polarization: -116.18 SS G_CDS: -7.38 Total: -123.57 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -3.18 Total: -28.74 kcal Atomic # 14 Polarization: 32.57 SS G_CDS: 2.03 Total: 34.60 kcal Atomic # 16 Polarization: -35.17 SS G_CDS: -1.67 Total: -36.84 kcal Total: -67.34 0.56 -66.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794622272.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.896 kcal (2) G-P(sol) polarization free energy of solvation -67.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds