Wall clock time and date at job start Wed Apr 1 2020 04:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86305 * 109.46980 * 2 1 4 4 C 1.86296 * 109.47367 * 240.00054 * 2 1 3 5 5 C 1.86803 * 109.46852 * 119.99832 * 2 1 3 6 6 C 1.38234 * 119.99940 * 90.00443 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.28096 * 6 5 2 8 8 C 1.38229 * 120.00124 * 359.45911 * 7 6 5 9 9 C 1.50699 * 120.00230 * 180.28369 * 8 7 6 10 10 C 1.50691 * 109.47261 * 270.27992 * 9 8 7 11 11 O 1.21285 * 119.99959 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00271 * 179.97438 * 10 9 8 13 13 C 1.46504 * 120.00023 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.46427 * 90.00400 * 13 12 10 15 15 H 1.07999 * 120.00373 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99694 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00042 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00171 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47358 * 89.99744 * 18 16 14 20 20 H 1.48496 * 109.47093 * 209.99972 * 18 16 14 21 21 H 1.48499 * 109.47026 * 329.99712 * 18 16 14 22 22 C 1.46498 * 119.99982 * 359.97438 * 12 10 9 23 23 C 1.52998 * 109.47241 * 89.99681 * 22 12 10 24 24 C 1.47207 * 109.47296 * 180.02562 * 23 22 12 25 25 N 9.36878 * 154.60120 * 158.95253 * 5 1 2 26 26 C 1.38234 * 119.99957 * 0.56005 * 8 7 6 27 27 C 1.38234 * 119.99820 * 270.02211 * 5 2 1 28 28 H 1.08992 * 109.47179 * 300.00318 * 1 2 3 29 29 H 1.09007 * 109.47049 * 59.99985 * 1 2 3 30 30 H 1.08994 * 109.47120 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46698 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47017 * 299.99765 * 3 2 1 33 33 H 1.09004 * 109.46851 * 60.00120 * 3 2 1 34 34 H 1.09006 * 109.46796 * 300.00138 * 4 2 1 35 35 H 1.08998 * 109.47288 * 59.99832 * 4 2 1 36 36 H 1.09002 * 109.47253 * 180.02562 * 4 2 1 37 37 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 38 38 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 39 39 H 1.09007 * 109.47085 * 30.27493 * 9 8 7 40 40 H 1.08998 * 109.47270 * 150.26989 * 9 8 7 41 41 H 1.09002 * 109.46836 * 209.99828 * 13 12 10 42 42 H 1.08992 * 109.47381 * 330.00401 * 13 12 10 43 43 H 0.96998 * 120.00276 * 179.97438 * 17 16 14 44 44 H 1.09001 * 109.47382 * 209.99854 * 22 12 10 45 45 H 1.09006 * 109.46887 * 329.99753 * 22 12 10 46 46 H 1.09004 * 109.47166 * 299.99834 * 23 22 12 47 47 H 1.08998 * 109.47408 * 60.00385 * 23 22 12 48 48 H 1.08001 * 120.00274 * 179.72697 * 26 8 7 49 49 H 1.07997 * 120.00460 * 359.97438 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7160 -2.2431 1.4911 7 6 3.1712 -2.8957 2.6215 8 6 3.4066 -2.1839 3.7828 9 6 3.9089 -2.8942 5.0133 10 6 2.7369 -3.3683 5.8333 11 8 1.6051 -3.1504 5.4559 12 7 2.9464 -4.0345 6.9861 13 6 1.8069 -4.4949 7.7835 14 6 1.4160 -5.8830 7.3460 15 1 1.9614 -6.3730 6.5531 16 6 0.3619 -6.5275 7.9581 17 7 -0.3020 -5.9310 8.9241 18 14 -0.1223 -8.2484 7.4164 19 1 0.6297 -9.2489 8.2155 20 1 -1.5797 -8.4416 7.6261 21 1 0.1980 -8.4227 5.9769 22 6 4.3135 -4.2982 7.4417 23 6 4.7899 -3.1410 8.3219 24 6 6.1639 -3.4057 8.7792 25 7 7.2228 -3.6070 9.1345 26 6 3.1758 -0.8214 3.8172 27 6 2.7155 -0.1696 2.6883 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.5740 1.7565 0.0005 32 1 2.1207 2.2703 -0.8900 33 1 2.1206 2.2703 0.8900 34 1 2.1207 -1.9059 -1.5211 35 1 2.1208 -0.3644 -2.4111 36 1 3.5741 -0.8786 -1.5208 37 1 2.5357 -2.7986 0.5826 38 1 3.3471 -3.9610 2.5960 39 1 4.5149 -3.7504 4.7167 40 1 4.5143 -2.2090 5.6068 41 1 2.0839 -4.5107 8.8376 42 1 0.9651 -3.8178 7.6391 43 1 -1.0438 -6.3842 9.3545 44 1 4.3327 -5.2240 8.0168 45 1 4.9722 -4.3931 6.5784 46 1 4.7708 -2.2153 7.7468 47 1 4.1313 -3.0461 9.1852 48 1 3.3555 -0.2659 4.7258 49 1 2.5356 0.8949 2.7150 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798284196.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:08 Heat of formation + Delta-G solvation = -30.118831 kcal Electronic energy + Delta-G solvation = -26764.854287 eV Core-core repulsion = 23120.645294 eV Total energy + Delta-G solvation = -3644.208994 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.166 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.69647 -38.41430 -36.85219 -35.21668 -33.06888 -32.35436 -30.83490 -30.77878 -28.92342 -28.12490 -27.71698 -27.64312 -26.37304 -24.00769 -22.92202 -22.37921 -20.98021 -18.52497 -17.60851 -16.65803 -16.43607 -16.35731 -15.45828 -15.27369 -14.82776 -14.70539 -14.25620 -14.09803 -13.59548 -13.49934 -13.35007 -13.32097 -13.16331 -13.08421 -12.98714 -12.63542 -12.56465 -12.49603 -12.43383 -12.38243 -12.35538 -12.07464 -11.90200 -11.70674 -11.56904 -11.25579 -10.99172 -10.91317 -10.77016 -10.61209 -10.22496 -10.19047 -10.15675 -9.86401 -9.70875 -9.08048 -8.66441 -8.47832 -8.40518 -7.83609 -6.09026 -4.13521 1.39730 1.66109 2.57204 2.63822 2.73100 2.77837 2.81279 3.27786 3.31644 3.35509 3.36232 3.40159 3.64777 3.99620 4.29518 4.42601 4.90411 4.97090 4.98122 5.14288 5.18174 5.23356 5.29421 5.35293 5.39721 5.41276 5.44157 5.45446 5.52128 5.53122 5.55894 5.59454 5.63112 5.80412 5.83622 6.07159 6.12564 6.17865 6.21676 6.26594 6.31675 6.54755 6.66277 6.80931 6.94381 7.24769 7.36741 7.43649 7.56927 7.87194 8.17440 8.27097 8.84680 9.00491 9.52033 10.99124 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009297 B = 0.002796 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3011.087152 B =10013.205733 C =12158.630218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.056 2.944 3 C -0.446 4.446 4 C -0.447 4.447 5 C -0.377 4.377 6 C -0.089 4.089 7 C -0.116 4.116 8 C -0.045 4.045 9 C -0.111 4.111 10 C 0.509 3.491 11 O -0.523 6.523 12 N -0.599 5.599 13 C 0.245 3.755 14 C -0.528 4.528 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.894 5.894 18 Si 0.896 3.104 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.117 3.883 23 C -0.051 4.051 24 C 0.218 3.782 25 N -0.446 5.446 26 C -0.118 4.118 27 C -0.090 4.090 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.034 0.966 42 H 0.046 0.954 43 H 0.264 0.736 44 H 0.094 0.906 45 H 0.075 0.925 46 H 0.106 0.894 47 H 0.117 0.883 48 H 0.115 0.885 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.067 13.342 -15.620 22.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.248 2.752 3 C -0.554 4.554 4 C -0.555 4.555 5 C -0.420 4.420 6 C -0.106 4.106 7 C -0.134 4.134 8 C -0.045 4.045 9 C -0.151 4.151 10 C 0.295 3.705 11 O -0.398 6.398 12 N -0.331 5.331 13 C 0.126 3.874 14 C -0.566 4.566 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.533 5.533 18 Si 0.724 3.276 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.009 4.009 23 C -0.093 4.093 24 C -0.100 4.100 25 N -0.123 5.123 26 C -0.136 4.136 27 C -0.108 4.108 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.052 0.948 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.112 0.888 45 H 0.094 0.906 46 H 0.124 0.876 47 H 0.135 0.865 48 H 0.133 0.867 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.864 13.092 -15.097 21.861 hybrid contribution -0.710 -1.136 0.012 1.340 sum 8.154 11.957 -15.085 20.905 Atomic orbital electron populations 1.26126 1.20749 1.04649 1.04127 0.78183 0.66885 0.65998 0.64141 1.26109 1.06285 1.18743 1.04252 1.26114 1.06291 1.08131 1.14917 1.27190 1.05162 0.99550 1.10065 1.20942 0.97595 0.94552 0.97561 1.21055 0.99890 0.99353 0.93073 1.19366 0.97806 0.93627 0.93745 1.20872 0.97949 1.01235 0.95031 1.20204 0.90075 0.78743 0.81460 1.90719 1.24154 1.55893 1.69039 1.48227 1.06840 1.55263 1.22804 1.19334 0.83173 0.95176 0.89675 1.21415 1.15601 1.00191 1.19436 0.92422 1.24917 0.95900 0.98234 0.94944 1.69917 1.21312 1.37828 1.24223 0.86522 0.77776 0.84225 0.79067 1.20661 1.21104 1.19893 1.21301 0.84541 0.96970 0.98091 1.19915 0.84706 1.01937 1.02699 1.29069 0.94750 0.93127 0.93104 1.81162 1.12830 1.08846 1.09488 1.21010 1.00288 0.94083 0.98211 1.20925 0.97736 0.99174 0.92923 0.91112 0.91509 0.91087 0.91175 0.91339 0.91175 0.91153 0.91343 0.91174 0.86641 0.86614 0.88469 0.88681 0.94790 0.93614 0.92681 0.88803 0.90619 0.87601 0.86499 0.86688 0.86658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 -3.70 8.65 101.05 0.87 -2.82 16 2 Si 1.06 7.37 12.32 -169.99 -2.09 5.28 16 3 C -0.45 -2.93 8.53 101.05 0.86 -2.07 16 4 C -0.45 -3.03 8.53 101.05 0.86 -2.17 16 5 C -0.38 -4.13 4.59 -39.58 -0.18 -4.31 16 6 C -0.09 -1.08 9.29 -39.58 -0.37 -1.45 16 7 C -0.12 -1.62 9.70 -39.58 -0.38 -2.00 16 8 C -0.05 -0.64 4.37 -104.63 -0.46 -1.10 16 9 C -0.11 -1.46 4.38 -29.04 -0.13 -1.58 16 10 C 0.51 9.38 7.67 -10.99 -0.08 9.29 16 11 O -0.52 -12.31 15.61 5.55 0.09 -12.22 16 12 N -0.60 -10.89 2.46 -175.06 -0.43 -11.32 16 13 C 0.25 5.81 5.16 -5.19 -0.03 5.78 16 14 C -0.53 -14.12 9.39 -34.44 -0.32 -14.44 16 15 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 18 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 C 0.12 1.54 5.17 -4.04 -0.02 1.52 16 23 C -0.05 -0.52 6.03 -29.52 -0.18 -0.70 16 24 C 0.22 2.59 15.43 -20.79 -0.32 2.27 16 25 N -0.45 -6.50 18.53 42.11 0.78 -5.72 16 26 C -0.12 -1.55 9.70 -39.58 -0.38 -1.94 16 27 C -0.09 -1.05 9.29 -39.58 -0.37 -1.42 16 28 H 0.07 0.62 7.96 -51.93 -0.41 0.20 16 29 H 0.07 0.46 7.96 -51.93 -0.41 0.05 16 30 H 0.07 0.63 7.96 -51.93 -0.41 0.22 16 31 H 0.07 0.45 7.96 -51.93 -0.41 0.04 16 32 H 0.07 0.39 7.96 -51.93 -0.41 -0.02 16 33 H 0.07 0.46 7.69 -51.93 -0.40 0.06 16 34 H 0.07 0.49 7.69 -51.93 -0.40 0.09 16 35 H 0.07 0.41 7.96 -51.93 -0.41 -0.01 16 36 H 0.07 0.47 7.96 -51.93 -0.41 0.05 16 37 H 0.12 1.14 7.43 -52.49 -0.39 0.75 16 38 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 39 H 0.10 1.11 7.35 -51.93 -0.38 0.72 16 40 H 0.09 0.95 7.13 -51.93 -0.37 0.58 16 41 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 42 H 0.05 1.25 7.42 -51.93 -0.39 0.86 16 43 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 45 H 0.08 0.81 6.44 -51.93 -0.33 0.48 16 46 H 0.11 0.86 7.22 -51.93 -0.37 0.49 16 47 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 49 H 0.12 1.06 7.43 -52.49 -0.39 0.67 16 LS Contribution 422.46 15.07 6.37 6.37 Total: -1.00 -34.74 422.46 -8.27 -43.01 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -7.97 Total: -1.30 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -0.72 Total: -15.51 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 1.09 Total: -41.92 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.09 Total: -12.22 kcal Atomic # 14 Polarization: 28.68 SS G_CDS: -7.12 Total: 21.57 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -34.74 -8.27 -43.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798284196.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.892 kcal (2) G-P(sol) polarization free energy of solvation -34.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds