Wall clock time and date at job start Wed Apr 1 2020 04:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86305 * 109.46980 * 2 1 4 4 C 1.86296 * 109.47367 * 240.00054 * 2 1 3 5 5 C 1.86803 * 109.46852 * 119.99832 * 2 1 3 6 6 C 1.38234 * 119.99940 * 90.00443 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.28096 * 6 5 2 8 8 C 1.38229 * 120.00124 * 359.45911 * 7 6 5 9 9 C 1.50699 * 120.00230 * 180.28369 * 8 7 6 10 10 C 1.50691 * 109.47261 * 270.27992 * 9 8 7 11 11 O 1.21285 * 119.99959 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00271 * 179.97438 * 10 9 8 13 13 C 1.46504 * 120.00023 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.46427 * 90.00400 * 13 12 10 15 15 H 1.07999 * 120.00373 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99694 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00042 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00171 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47358 * 89.99744 * 18 16 14 20 20 H 1.48496 * 109.47093 * 209.99972 * 18 16 14 21 21 H 1.48499 * 109.47026 * 329.99712 * 18 16 14 22 22 C 1.46498 * 119.99982 * 359.97438 * 12 10 9 23 23 C 1.52998 * 109.47241 * 89.99681 * 22 12 10 24 24 C 1.47207 * 109.47296 * 180.02562 * 23 22 12 25 25 N 9.36878 * 154.60120 * 158.95253 * 5 1 2 26 26 C 1.38234 * 119.99957 * 0.56005 * 8 7 6 27 27 C 1.38234 * 119.99820 * 270.02211 * 5 2 1 28 28 H 1.08992 * 109.47179 * 300.00318 * 1 2 3 29 29 H 1.09007 * 109.47049 * 59.99985 * 1 2 3 30 30 H 1.08994 * 109.47120 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46698 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47017 * 299.99765 * 3 2 1 33 33 H 1.09004 * 109.46851 * 60.00120 * 3 2 1 34 34 H 1.09006 * 109.46796 * 300.00138 * 4 2 1 35 35 H 1.08998 * 109.47288 * 59.99832 * 4 2 1 36 36 H 1.09002 * 109.47253 * 180.02562 * 4 2 1 37 37 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 38 38 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 39 39 H 1.09007 * 109.47085 * 30.27493 * 9 8 7 40 40 H 1.08998 * 109.47270 * 150.26989 * 9 8 7 41 41 H 1.09002 * 109.46836 * 209.99828 * 13 12 10 42 42 H 1.08992 * 109.47381 * 330.00401 * 13 12 10 43 43 H 0.96998 * 120.00276 * 179.97438 * 17 16 14 44 44 H 1.09001 * 109.47382 * 209.99854 * 22 12 10 45 45 H 1.09006 * 109.46887 * 329.99753 * 22 12 10 46 46 H 1.09004 * 109.47166 * 299.99834 * 23 22 12 47 47 H 1.08998 * 109.47408 * 60.00385 * 23 22 12 48 48 H 1.08001 * 120.00274 * 179.72697 * 26 8 7 49 49 H 1.07997 * 120.00460 * 359.97438 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7160 -2.2431 1.4911 7 6 3.1712 -2.8957 2.6215 8 6 3.4066 -2.1839 3.7828 9 6 3.9089 -2.8942 5.0133 10 6 2.7369 -3.3683 5.8333 11 8 1.6051 -3.1504 5.4559 12 7 2.9464 -4.0345 6.9861 13 6 1.8069 -4.4949 7.7835 14 6 1.4160 -5.8830 7.3460 15 1 1.9614 -6.3730 6.5531 16 6 0.3619 -6.5275 7.9581 17 7 -0.3020 -5.9310 8.9241 18 14 -0.1223 -8.2484 7.4164 19 1 0.6297 -9.2489 8.2155 20 1 -1.5797 -8.4416 7.6261 21 1 0.1980 -8.4227 5.9769 22 6 4.3135 -4.2982 7.4417 23 6 4.7899 -3.1410 8.3219 24 6 6.1639 -3.4057 8.7792 25 7 7.2228 -3.6070 9.1345 26 6 3.1758 -0.8214 3.8172 27 6 2.7155 -0.1696 2.6883 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.5740 1.7565 0.0005 32 1 2.1207 2.2703 -0.8900 33 1 2.1206 2.2703 0.8900 34 1 2.1207 -1.9059 -1.5211 35 1 2.1208 -0.3644 -2.4111 36 1 3.5741 -0.8786 -1.5208 37 1 2.5357 -2.7986 0.5826 38 1 3.3471 -3.9610 2.5960 39 1 4.5149 -3.7504 4.7167 40 1 4.5143 -2.2090 5.6068 41 1 2.0839 -4.5107 8.8376 42 1 0.9651 -3.8178 7.6391 43 1 -1.0438 -6.3842 9.3545 44 1 4.3327 -5.2240 8.0168 45 1 4.9722 -4.3931 6.5784 46 1 4.7708 -2.2153 7.7468 47 1 4.1313 -3.0461 9.1852 48 1 3.3555 -0.2659 4.7258 49 1 2.5356 0.8949 2.7150 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798284196.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:07 Heat of formation + Delta-G solvation = -46.362442 kcal Electronic energy + Delta-G solvation = -26765.558663 eV Core-core repulsion = 23120.645294 eV Total energy + Delta-G solvation = -3644.913369 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.166 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.99056 -39.49838 -37.97031 -36.65348 -34.91814 -33.53838 -32.13051 -31.69349 -29.81833 -29.30724 -28.22904 -28.21495 -27.79180 -25.30412 -24.60490 -23.30760 -22.05502 -19.89999 -18.80628 -18.33321 -17.89259 -17.46795 -16.86446 -16.41635 -16.16463 -15.75380 -15.58799 -15.42084 -14.78273 -14.35315 -14.31401 -14.16608 -14.09721 -13.93181 -13.84790 -13.70057 -13.64576 -13.53573 -13.29165 -13.23567 -13.05386 -13.02798 -12.97300 -12.90938 -12.78238 -12.71307 -12.60967 -12.41098 -12.18065 -11.87018 -11.70653 -11.66415 -10.86434 -10.68219 -10.66240 -10.59095 -10.55249 -9.61938 -9.46031 -9.36852 -8.18699 -6.30922 0.47288 0.70424 1.38036 1.40483 1.49817 1.70417 1.85445 1.93378 1.93845 2.13846 2.16224 2.34005 2.46169 2.76101 3.03551 3.12650 3.24945 3.83794 3.97402 4.04710 4.14726 4.17233 4.30577 4.43581 4.60983 4.64932 4.67174 4.84804 4.86191 4.88836 4.89445 4.95450 4.96159 4.98728 4.99305 5.06913 5.12285 5.25232 5.33682 5.34624 5.59028 5.61488 5.64345 5.69842 5.72271 5.79299 5.83115 5.89086 6.13066 6.34080 6.61217 6.75686 6.82784 7.34508 7.55546 8.87969 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009297 B = 0.002796 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3011.087152 B =10013.205733 C =12158.630218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.467 4.467 2 Si 1.118 2.882 3 C -0.449 4.449 4 C -0.453 4.453 5 C -0.392 4.392 6 C -0.104 4.104 7 C -0.142 4.142 8 C -0.070 4.070 9 C -0.097 4.097 10 C 0.505 3.495 11 O -0.584 6.584 12 N -0.599 5.599 13 C 0.260 3.740 14 C -0.539 4.539 15 H 0.052 0.948 16 C 0.010 3.990 17 N -0.926 5.926 18 Si 0.957 3.043 19 H -0.266 1.266 20 H -0.284 1.284 21 H -0.275 1.275 22 C 0.113 3.887 23 C -0.038 4.038 24 C 0.247 3.753 25 N -0.489 5.489 26 C -0.135 4.135 27 C -0.102 4.102 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.133 0.867 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.133 0.867 41 H 0.034 0.966 42 H 0.001 0.999 43 H 0.265 0.735 44 H 0.082 0.918 45 H 0.108 0.892 46 H 0.138 0.862 47 H 0.119 0.881 48 H 0.127 0.873 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.523 14.279 -17.280 24.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.573 4.573 2 Si 1.305 2.695 3 C -0.558 4.558 4 C -0.561 4.561 5 C -0.430 4.430 6 C -0.121 4.121 7 C -0.160 4.160 8 C -0.071 4.071 9 C -0.136 4.136 10 C 0.294 3.706 11 O -0.464 6.464 12 N -0.330 5.330 13 C 0.139 3.861 14 C -0.578 4.578 15 H 0.070 0.930 16 C -0.189 4.189 17 N -0.566 5.566 18 Si 0.783 3.217 19 H -0.191 1.191 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.012 4.012 23 C -0.079 4.079 24 C -0.071 4.071 25 N -0.167 5.167 26 C -0.153 4.153 27 C -0.120 4.120 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.151 0.849 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.151 0.849 41 H 0.052 0.948 42 H 0.020 0.980 43 H 0.074 0.926 44 H 0.101 0.899 45 H 0.126 0.874 46 H 0.155 0.845 47 H 0.137 0.863 48 H 0.145 0.855 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 10.376 14.001 -16.716 24.148 hybrid contribution -1.217 -1.397 0.499 1.919 sum 9.159 12.604 -16.217 22.489 Atomic orbital electron populations 1.26355 1.22560 1.03941 1.04411 0.77336 0.64761 0.65616 0.61758 1.26110 1.06580 1.18119 1.04959 1.26164 1.06562 1.08086 1.15322 1.28156 1.03590 0.99406 1.11864 1.21298 0.97493 0.95517 0.97833 1.21299 1.01023 0.99546 0.94151 1.19558 0.99135 0.94316 0.94083 1.20864 0.95797 1.02684 0.94298 1.21143 0.90837 0.77500 0.81128 1.90687 1.27041 1.58211 1.70414 1.48105 1.07497 1.54912 1.22493 1.18776 0.84045 0.92931 0.90327 1.21753 1.15587 1.01471 1.18971 0.92954 1.25731 0.96037 1.02008 0.95093 1.70024 1.21878 1.39383 1.25348 0.85564 0.77460 0.80095 0.78600 1.19135 1.20992 1.19944 1.21531 0.82185 0.97694 0.99776 1.19843 0.83536 1.01914 1.02656 1.29091 0.94386 0.91738 0.91841 1.81206 1.14295 1.10269 1.10971 1.21335 1.00509 0.94106 0.99361 1.21357 0.97206 1.00594 0.92793 0.91988 0.90096 0.92317 0.90792 0.90123 0.91068 0.91475 0.90117 0.90870 0.84909 0.86940 0.86358 0.84884 0.94809 0.98046 0.92588 0.89913 0.87437 0.84459 0.86277 0.85482 0.84236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 -7.18 8.65 113.37 0.98 -6.20 16 2 Si 1.12 13.41 12.32 68.60 0.85 14.25 16 3 C -0.45 -4.61 8.53 113.37 0.97 -3.64 16 4 C -0.45 -5.11 8.53 113.37 0.97 -4.15 16 5 C -0.39 -8.17 4.59 22.27 0.10 -8.07 16 6 C -0.10 -2.49 9.29 22.27 0.21 -2.29 16 7 C -0.14 -3.99 9.70 22.27 0.22 -3.78 16 8 C -0.07 -1.96 4.37 -19.87 -0.09 -2.05 16 9 C -0.10 -2.39 4.38 29.10 0.13 -2.26 16 10 C 0.50 18.60 7.67 87.65 0.67 19.27 16 11 O -0.58 -28.55 15.61 -3.04 -0.05 -28.60 16 12 N -0.60 -21.67 2.46 -826.15 -2.03 -23.70 16 13 C 0.26 12.73 5.16 85.63 0.44 13.17 16 14 C -0.54 -29.48 9.39 25.60 0.24 -29.24 16 15 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 16 C 0.01 0.58 5.46 84.65 0.46 1.04 16 17 N -0.93 -54.31 13.29 21.45 0.28 -54.03 16 18 Si 0.96 44.13 29.54 68.60 2.03 46.15 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 22 C 0.11 2.74 5.17 86.38 0.45 3.19 16 23 C -0.04 -0.69 6.03 28.79 0.17 -0.52 16 24 C 0.25 5.32 15.43 89.46 1.38 6.70 16 25 N -0.49 -13.50 18.53 19.99 0.37 -13.13 16 26 C -0.14 -3.45 9.70 22.27 0.22 -3.23 16 27 C -0.10 -2.27 9.29 22.27 0.21 -2.06 16 28 H 0.06 1.04 7.96 -2.39 -0.02 1.03 16 29 H 0.08 0.98 7.96 -2.38 -0.02 0.97 16 30 H 0.06 1.03 7.96 -2.39 -0.02 1.01 16 31 H 0.07 0.73 7.96 -2.39 -0.02 0.71 16 32 H 0.08 0.66 7.96 -2.39 -0.02 0.64 16 33 H 0.07 0.73 7.69 -2.38 -0.02 0.72 16 34 H 0.07 0.81 7.69 -2.38 -0.02 0.79 16 35 H 0.08 0.73 7.96 -2.39 -0.02 0.71 16 36 H 0.07 0.80 7.96 -2.39 -0.02 0.78 16 37 H 0.13 2.55 7.43 -2.91 -0.02 2.53 16 38 H 0.11 3.05 8.06 -2.91 -0.02 3.03 16 39 H 0.12 2.40 7.35 -2.38 -0.02 2.38 16 40 H 0.13 2.19 7.13 -2.39 -0.02 2.18 16 41 H 0.03 1.63 8.07 -2.39 -0.02 1.62 16 42 H 0.00 0.08 7.42 -2.39 -0.02 0.06 16 43 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 44 H 0.08 2.24 8.07 -2.39 -0.02 2.22 16 45 H 0.11 1.97 6.44 -2.38 -0.02 1.95 16 46 H 0.14 1.70 7.22 -2.38 -0.02 1.68 16 47 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 48 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 49 H 0.14 2.29 7.43 -2.91 -0.02 2.27 16 Total: -1.00 -79.25 422.46 10.10 -69.15 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.92 Total: 13.98 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: 7.72 Total: -24.09 kcal Atomic # 7 Polarization: -89.48 SS G_CDS: -1.37 Total: -90.85 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.05 Total: -28.60 kcal Atomic # 14 Polarization: 57.53 SS G_CDS: 2.87 Total: 60.41 kcal Total: -79.25 10.10 -69.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798284196.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.792 kcal (2) G-P(sol) polarization free energy of solvation -79.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 10.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds