Wall clock time and date at job start Wed Apr 1 2020 03:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46895 * 111.00558 * 2 1 4 4 C 1.50704 * 109.46953 * 293.95104 * 3 2 1 5 5 H 1.07996 * 119.99783 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99863 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00259 * 0.02562 * 6 4 3 8 8 Si 1.86810 * 119.99616 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47021 * 60.00421 * 8 6 4 10 10 H 1.48505 * 109.46822 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47017 * 300.00082 * 8 6 4 12 12 C 1.46907 * 110.99876 * 123.95467 * 2 1 3 13 13 C 1.52999 * 109.47361 * 164.01280 * 12 2 1 14 14 H 1.08995 * 109.47311 * 58.50061 * 13 12 2 15 15 O 1.42900 * 109.46426 * 298.50506 * 13 12 2 16 16 C 1.52995 * 109.46903 * 178.50919 * 13 12 2 17 17 N 1.46506 * 109.46802 * 184.99590 * 16 13 12 18 18 C 1.39938 * 119.99940 * 179.97438 * 17 16 13 19 19 C 1.38863 * 120.02035 * 179.97438 * 18 17 16 20 20 C 1.38112 * 119.97875 * 180.27708 * 19 18 17 21 21 C 1.38698 * 120.02036 * 359.49674 * 20 19 18 22 22 O 1.35997 * 119.98073 * 180.23112 * 21 20 19 23 23 C 1.42908 * 117.00113 * 0.27488 * 22 21 20 24 24 C 1.52993 * 109.47143 * 180.02562 * 23 22 21 25 25 F 1.39901 * 109.47153 * 299.99505 * 24 23 22 26 26 F 1.39899 * 109.47858 * 59.99509 * 24 23 22 27 27 C 1.38697 * 120.03948 * 0.50425 * 21 20 19 28 28 C 1.38110 * 120.02013 * 359.74888 * 27 21 20 29 29 H 1.08996 * 109.47342 * 301.53943 * 1 2 3 30 30 H 1.09008 * 109.46726 * 61.52892 * 1 2 3 31 31 H 1.08989 * 109.47321 * 181.53072 * 1 2 3 32 32 H 1.09000 * 109.47166 * 53.94646 * 3 2 1 33 33 H 1.08998 * 109.47606 * 173.95363 * 3 2 1 34 34 H 0.97002 * 120.00014 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47149 * 44.00494 * 12 2 1 36 36 H 1.09007 * 109.46712 * 284.00779 * 12 2 1 37 37 H 0.96702 * 114.00865 * 299.99756 * 15 13 12 38 38 H 1.09000 * 109.47309 * 64.99679 * 16 13 12 39 39 H 1.09004 * 109.47493 * 304.99255 * 16 13 12 40 40 H 0.96992 * 119.99933 * 359.97438 * 17 16 13 41 41 H 1.08000 * 120.00834 * 359.97438 * 19 18 17 42 42 H 1.08005 * 119.98490 * 179.72430 * 20 19 18 43 43 H 1.09001 * 109.46642 * 299.99704 * 23 22 21 44 44 H 1.08998 * 109.46971 * 59.99718 * 23 22 21 45 45 H 1.08997 * 109.47355 * 180.02562 * 24 23 22 46 46 H 1.08004 * 119.99456 * 179.72943 * 27 21 20 47 47 H 1.08004 * 120.01307 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6371 2.0470 -1.2985 5 1 1.0741 1.5114 -2.0485 6 6 2.0271 3.3493 -1.5286 7 7 2.7123 4.0018 -0.6151 8 14 1.5821 4.1871 -3.1379 9 1 0.1049 4.2236 -3.2850 10 1 2.1135 5.5738 -3.1375 11 1 2.1738 3.4300 -4.2701 12 6 1.9954 -0.7660 1.1376 13 6 3.4728 -1.0840 0.8985 14 1 4.0281 -0.1550 0.7698 15 8 3.6032 -1.8840 -0.2783 16 6 4.0305 -1.8496 2.1000 17 7 5.4713 -2.0498 1.9254 18 6 6.2068 -2.7295 2.9027 19 6 7.5723 -2.9200 2.7373 20 6 8.2964 -3.5961 3.6998 21 6 7.6619 -4.0755 4.8361 22 8 8.3765 -4.7370 5.7855 23 6 9.7769 -4.8964 5.5497 24 6 10.4070 -5.6593 6.7167 25 9 10.2124 -4.9420 7.9020 26 9 9.8068 -6.9179 6.8295 27 6 6.2980 -3.8858 5.0021 28 6 5.5714 -3.2145 4.0383 29 1 -0.3634 0.5375 0.8758 30 1 -0.3633 0.4899 -0.9035 31 1 -0.3633 -1.0272 0.0274 32 1 1.5611 1.9273 0.8308 33 1 3.0798 1.3443 0.1082 34 1 2.9869 4.9179 -0.7771 35 1 1.4355 -1.6956 1.2400 36 1 1.8933 -0.1781 2.0499 37 1 3.1332 -2.7279 -0.2345 38 1 3.5357 -2.8178 2.1755 39 1 3.8510 -1.2777 3.0105 40 1 5.9153 -1.7111 1.1323 41 1 8.0671 -2.5439 1.8541 42 1 9.3576 -3.7482 3.5691 43 1 9.9285 -5.4556 4.6264 44 1 10.2444 -3.9157 5.4615 45 1 11.4752 -5.7805 6.5371 46 1 5.8039 -4.2633 5.8852 47 1 4.5093 -3.0672 4.1675 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819455040.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:41 Heat of formation + Delta-G solvation = -180.278586 kcal Electronic energy + Delta-G solvation = -28937.654126 eV Core-core repulsion = 24369.497739 eV Total energy + Delta-G solvation = -4568.156386 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.88382 -47.94342 -41.06743 -39.74959 -38.74435 -37.18257 -35.40071 -34.61088 -32.32636 -31.51235 -31.09834 -29.47684 -28.83236 -26.89756 -25.47931 -24.68080 -23.65445 -23.02185 -21.94103 -21.68136 -19.53557 -18.62568 -18.44398 -18.28235 -18.04485 -17.61073 -17.39491 -17.00793 -16.55227 -16.44024 -16.35722 -16.07957 -15.47434 -15.24736 -15.11152 -14.96870 -14.82096 -14.50696 -14.31924 -14.31114 -14.14656 -13.99673 -13.90656 -13.41552 -13.31382 -13.15126 -13.07605 -12.90660 -12.61283 -12.53567 -12.34825 -12.21283 -12.19754 -11.99159 -11.68338 -11.51842 -11.34067 -10.85297 -10.60230 -10.46986 -9.94806 -8.96210 -8.20822 -8.04832 -6.30109 0.40816 0.68864 1.39985 1.43263 1.51017 2.08281 2.39223 2.45833 2.88283 2.90693 3.11595 3.26899 3.33422 3.53357 3.62809 3.86092 3.93857 3.96771 4.02968 4.06989 4.20509 4.27013 4.39803 4.43684 4.44237 4.47931 4.58686 4.59285 4.70519 4.74919 4.78661 5.04981 5.06891 5.08368 5.12157 5.22155 5.30946 5.38605 5.43279 5.64362 5.70858 6.06065 6.29995 6.33263 6.51935 6.64565 6.81867 6.85640 7.01546 7.39274 8.89879 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.023856 B = 0.001578 C = 0.001532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.439113 B =17740.875925 C =18267.941334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.541 5.541 3 C 0.209 3.791 4 C -0.524 4.524 5 H 0.061 0.939 6 C 0.000 4.000 7 N -0.934 5.934 8 Si 0.968 3.032 9 H -0.267 1.267 10 H -0.283 1.283 11 H -0.270 1.270 12 C 0.026 3.974 13 C 0.115 3.885 14 H 0.069 0.931 15 O -0.557 6.557 16 C 0.108 3.892 17 N -0.743 5.743 18 C 0.179 3.821 19 C -0.168 4.168 20 C -0.153 4.153 21 C 0.050 3.950 22 O -0.333 6.333 23 C -0.003 4.003 24 C 0.265 3.735 25 F -0.219 7.219 26 F -0.219 7.219 27 C -0.110 4.110 28 C -0.169 4.169 29 H 0.008 0.992 30 H 0.053 0.947 31 H 0.084 0.916 32 H -0.041 1.041 33 H 0.006 0.994 34 H 0.264 0.736 35 H 0.102 0.898 36 H 0.031 0.969 37 H 0.383 0.617 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.402 0.598 41 H 0.135 0.865 42 H 0.153 0.847 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.183 0.817 46 H 0.133 0.867 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.310 -21.164 12.548 28.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.265 5.265 3 C 0.082 3.918 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.792 3.208 9 H -0.192 1.192 10 H -0.209 1.209 11 H -0.195 1.195 12 C -0.103 4.103 13 C 0.055 3.945 14 H 0.087 0.913 15 O -0.363 6.363 16 C -0.018 4.018 17 N -0.374 5.374 18 C 0.076 3.924 19 C -0.190 4.190 20 C -0.172 4.172 21 C 0.004 3.996 22 O -0.248 6.248 23 C -0.079 4.079 24 C 0.212 3.788 25 F -0.201 7.201 26 F -0.200 7.200 27 C -0.129 4.129 28 C -0.191 4.191 29 H 0.027 0.973 30 H 0.072 0.928 31 H 0.103 0.897 32 H -0.024 1.024 33 H 0.024 0.976 34 H 0.072 0.928 35 H 0.120 0.880 36 H 0.049 0.951 37 H 0.231 0.769 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.237 0.763 41 H 0.153 0.847 42 H 0.170 0.830 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.200 0.800 46 H 0.151 0.849 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 14.598 -20.805 12.218 28.200 hybrid contribution -0.630 1.122 0.034 1.287 sum 13.968 -19.684 12.252 27.068 Atomic orbital electron populations 1.22218 0.87403 1.01222 0.99877 1.61931 1.07910 1.15090 1.41562 1.19393 0.93857 0.83915 0.94606 1.21464 1.34757 0.97446 1.02563 0.92101 1.25905 0.95092 0.98115 1.00632 1.70072 1.39402 1.11866 1.36161 0.85462 0.78862 0.77146 0.79306 1.19155 1.20851 1.19506 1.22750 0.96217 0.99227 0.92065 1.21839 0.94655 0.93385 0.84631 0.91316 1.86635 1.75980 1.34667 1.38988 1.21906 0.81553 1.00490 0.97801 1.44588 1.07186 1.62731 1.22865 1.18004 0.91389 0.93335 0.89682 1.20636 0.92175 1.04686 1.01539 1.21179 1.01120 1.01259 0.93603 1.18824 0.91828 0.98859 0.90061 1.86066 1.21019 1.73253 1.44487 1.24284 0.80710 1.03503 0.99418 1.22740 1.00482 0.74826 0.80757 1.92983 1.96995 1.78633 1.51487 1.92981 1.87024 1.43610 1.96400 1.20335 0.91332 1.00955 1.00273 1.20611 1.00584 1.03847 0.94082 0.97331 0.92790 0.89736 1.02389 0.97558 0.92759 0.87975 0.95121 0.76879 0.89926 0.91558 0.76301 0.84717 0.82960 0.87082 0.87267 0.80010 0.84899 0.84557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.50 9.32 127.69 1.19 2.69 16 2 N -0.54 -22.42 4.60 -927.05 -4.27 -26.69 16 3 C 0.21 11.05 4.57 85.56 0.39 11.44 16 4 C -0.52 -29.99 8.54 25.60 0.22 -29.78 16 5 H 0.06 3.43 7.10 -2.91 -0.02 3.41 16 6 C 0.00 0.02 5.46 84.65 0.46 0.49 16 7 N -0.93 -56.58 13.29 21.45 0.28 -56.30 16 8 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 9 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 12 C 0.03 0.83 4.63 86.30 0.40 1.23 16 13 C 0.12 3.41 3.02 30.59 0.09 3.50 16 14 H 0.07 2.61 6.55 -2.39 -0.02 2.60 16 15 O -0.56 -16.70 13.18 -148.98 -1.96 -18.66 16 16 C 0.11 2.40 4.55 86.38 0.39 2.79 16 17 N -0.74 -17.15 5.69 -339.25 -1.93 -19.08 16 18 C 0.18 4.02 6.66 38.15 0.25 4.27 16 19 C -0.17 -3.36 9.89 22.39 0.22 -3.14 16 20 C -0.15 -2.69 9.03 22.35 0.20 -2.48 16 21 C 0.05 1.03 6.69 22.49 0.15 1.18 16 22 O -0.33 -6.65 10.03 -93.52 -0.94 -7.59 16 23 C 0.00 -0.03 4.96 71.98 0.36 0.32 16 24 C 0.26 2.50 5.63 71.98 0.41 2.90 16 25 F -0.22 -3.64 17.28 44.97 0.78 -2.86 16 26 F -0.22 -3.55 17.28 44.97 0.78 -2.77 16 27 C -0.11 -2.37 9.98 22.35 0.22 -2.14 16 28 C -0.17 -3.63 9.31 22.39 0.21 -3.42 16 29 H 0.01 0.30 8.13 -2.39 -0.02 0.28 16 30 H 0.05 2.17 6.90 -2.38 -0.02 2.16 16 31 H 0.08 2.39 7.97 -2.39 -0.02 2.38 16 32 H -0.04 -2.39 8.11 -2.39 -0.02 -2.41 16 33 H 0.01 0.37 6.38 -2.39 -0.02 0.35 16 34 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 35 H 0.10 2.42 7.88 -2.39 -0.02 2.40 16 36 H 0.03 0.99 8.05 -2.38 -0.02 0.97 16 37 H 0.38 8.13 9.05 -74.06 -0.67 7.46 16 38 H 0.08 1.48 7.95 -2.39 -0.02 1.46 16 39 H 0.07 1.48 7.95 -2.39 -0.02 1.46 16 40 H 0.40 9.71 8.49 -92.71 -0.79 8.92 16 41 H 0.13 2.33 8.06 -2.91 -0.02 2.30 16 42 H 0.15 1.65 6.29 -2.91 -0.02 1.63 16 43 H 0.11 0.63 7.65 -2.39 -0.02 0.61 16 44 H 0.11 0.67 7.67 -2.39 -0.02 0.65 16 45 H 0.18 -0.27 8.14 -2.39 -0.02 -0.29 16 46 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 47 H 0.14 2.57 6.73 -2.91 -0.02 2.55 16 Total: -1.00 -75.65 395.84 -0.51 -76.16 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -0.45 Total: 21.20 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 5.17 Total: -10.14 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -5.91 Total: -102.07 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -2.90 Total: -26.25 kcal Atomic # 9 Polarization: -7.19 SS G_CDS: 1.55 Total: -5.63 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -75.65 -0.51 -76.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819455040.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.114 kcal (2) G-P(sol) polarization free energy of solvation -75.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds