Wall clock time and date at job start Wed Apr 1 2020 03:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46895 * 111.00162 * 2 1 4 4 C 1.50708 * 109.47416 * 66.04278 * 3 2 1 5 5 H 1.08005 * 119.99504 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00341 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99854 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 119.99929 * 180.02562 * 6 4 3 9 9 H 1.48507 * 109.47246 * 59.99890 * 8 6 4 10 10 H 1.48503 * 109.46824 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47260 * 299.99837 * 8 6 4 12 12 C 1.46901 * 111.00335 * 236.04153 * 2 1 3 13 13 C 1.52999 * 109.47469 * 199.85341 * 12 2 1 14 14 H 1.09013 * 109.46905 * 300.46686 * 13 12 2 15 15 O 1.42895 * 109.47164 * 60.46264 * 13 12 2 16 16 C 1.53001 * 109.47387 * 180.46685 * 13 12 2 17 17 N 1.46498 * 109.47174 * 180.02562 * 16 13 12 18 18 C 1.39960 * 120.00081 * 180.02562 * 17 16 13 19 19 C 1.38727 * 120.08807 * 0.02562 * 18 17 16 20 20 C 1.38226 * 119.97886 * 179.97438 * 19 18 17 21 21 C 1.38251 * 120.16028 * 359.97438 * 20 19 18 22 22 C 1.38283 * 120.18040 * 0.02562 * 21 20 19 23 23 C 1.38500 * 120.01791 * 0.02562 * 22 21 20 24 24 O 1.36015 * 120.07873 * 180.02562 * 23 22 21 25 25 C 1.42898 * 116.99909 * 359.97438 * 24 23 22 26 26 C 1.53001 * 109.47040 * 179.97438 * 25 24 23 27 27 F 1.39899 * 109.47639 * 299.99951 * 26 25 24 28 28 F 1.39898 * 109.46946 * 60.00276 * 26 25 24 29 29 H 1.09000 * 109.46865 * 188.77284 * 1 2 3 30 30 H 1.08999 * 109.47268 * 308.78139 * 1 2 3 31 31 H 1.09003 * 109.46555 * 68.78137 * 1 2 3 32 32 H 1.08999 * 109.47490 * 186.03758 * 3 2 1 33 33 H 1.08997 * 109.47318 * 306.04699 * 3 2 1 34 34 H 0.97002 * 120.00080 * 180.02562 * 7 6 4 35 35 H 1.09003 * 109.46522 * 79.85716 * 12 2 1 36 36 H 1.08998 * 109.47341 * 319.85572 * 12 2 1 37 37 H 0.96696 * 114.00025 * 59.99986 * 15 13 12 38 38 H 1.08997 * 109.46681 * 59.99825 * 16 13 12 39 39 H 1.08999 * 109.46559 * 300.00102 * 16 13 12 40 40 H 0.97003 * 119.99879 * 359.97438 * 17 16 13 41 41 H 1.08001 * 120.00787 * 359.95900 * 19 18 17 42 42 H 1.07996 * 119.91887 * 179.97438 * 20 19 18 43 43 H 1.08004 * 119.90906 * 180.27997 * 21 20 19 44 44 H 1.08000 * 119.98713 * 180.02562 * 22 21 20 45 45 H 1.09001 * 109.47649 * 299.99595 * 25 24 23 46 46 H 1.09005 * 109.47338 * 60.00358 * 25 24 23 47 47 H 1.09001 * 109.47031 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2985 5 1 1.0745 1.5113 2.0488 6 6 2.0267 3.3495 1.5285 7 7 2.7120 4.0019 0.6150 8 14 1.5829 4.1868 3.1382 9 1 2.1756 3.4297 4.2699 10 1 2.1150 5.5732 3.1381 11 1 0.1057 4.2231 3.2865 12 6 1.9955 -0.7661 -1.1375 13 6 3.4449 -1.1667 -0.8555 14 1 4.0464 -0.2706 -0.7025 15 8 3.4945 -1.9798 0.3186 16 6 3.9970 -1.9546 -2.0452 17 7 5.3846 -2.3388 -1.7749 18 6 6.1057 -3.0715 -2.7247 19 6 5.5083 -3.4345 -3.9230 20 6 6.2226 -4.1576 -4.8597 21 6 7.5324 -4.5203 -4.6058 22 6 8.1343 -4.1619 -3.4136 23 6 7.4251 -3.4383 -2.4694 24 8 8.0162 -3.0847 -1.2965 25 6 9.3718 -3.4937 -1.1040 26 6 9.8621 -3.0080 0.2615 27 9 9.7840 -1.6122 0.3156 28 9 9.0614 -3.5592 1.2675 29 1 -0.3633 -1.0157 0.1567 30 1 -0.3634 0.6437 0.8011 31 1 -0.3632 0.3720 -0.9581 32 1 3.0797 1.3444 -0.1081 33 1 1.5611 1.9273 -0.8309 34 1 2.9866 4.9180 0.7769 35 1 1.9567 -0.1526 -2.0377 36 1 1.3924 -1.6624 -1.2823 37 1 2.9803 -2.7961 0.2537 38 1 3.9592 -1.3344 -2.9407 39 1 3.3955 -2.8507 -2.1981 40 1 5.8040 -2.0847 -0.9379 41 1 4.4853 -3.1523 -4.1238 42 1 5.7565 -4.4400 -5.7920 43 1 8.0882 -5.0814 -5.3425 44 1 9.1578 -4.4465 -3.2187 45 1 9.4328 -4.5812 -1.1465 46 1 9.9958 -3.0638 -1.8876 47 1 10.8960 -3.3203 0.4085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819460857.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:54 Heat of formation + Delta-G solvation = -153.462481 kcal Electronic energy + Delta-G solvation = -30142.067808 eV Core-core repulsion = 25575.074255 eV Total energy + Delta-G solvation = -4566.993553 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.14766 -47.18076 -40.40140 -38.35714 -37.55276 -35.82733 -34.72039 -32.47235 -31.31058 -30.52440 -29.79028 -28.36094 -27.25742 -25.77390 -24.24433 -23.49514 -22.35172 -21.90239 -21.08765 -20.09001 -18.84289 -17.73720 -17.59698 -17.14014 -16.62613 -16.44850 -16.30452 -15.84916 -15.63019 -15.30699 -14.91565 -14.69149 -14.51344 -14.32359 -14.04298 -13.73683 -13.61281 -13.52251 -13.45718 -13.31362 -13.17860 -12.60759 -12.56457 -12.27642 -11.93764 -11.78215 -11.45989 -11.36415 -11.35312 -11.19780 -11.14937 -10.87912 -10.72845 -10.63904 -10.35265 -10.14411 -9.76345 -9.66886 -9.14432 -8.69019 -8.39755 -7.22794 -7.20626 -5.99351 -4.00035 1.26836 1.49282 2.65187 3.36814 3.39958 3.40649 3.44309 3.47211 3.73126 3.79951 4.08173 4.44871 4.47882 4.63663 4.66059 4.73554 4.81718 4.89436 4.97785 5.06886 5.21649 5.29852 5.34415 5.38123 5.44150 5.53932 5.63078 5.67232 5.70608 5.99901 6.00698 6.12393 6.20776 6.31308 6.41803 6.47934 6.62287 6.72986 6.91593 7.27239 7.32168 7.42133 7.80732 7.83343 8.06082 8.11042 8.21765 8.56675 9.06733 9.63779 11.11728 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009957 B = 0.002680 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.550281 B =10445.773945 C =12355.960918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.531 5.531 3 C 0.192 3.808 4 C -0.506 4.506 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.029 3.971 13 C 0.105 3.895 14 H 0.108 0.892 15 O -0.537 6.537 16 C 0.094 3.906 17 N -0.730 5.730 18 C 0.209 3.791 19 C -0.174 4.174 20 C -0.100 4.100 21 C -0.151 4.151 22 C -0.161 4.161 23 C 0.047 3.953 24 O -0.305 6.305 25 C 0.011 3.989 26 C 0.272 3.728 27 F -0.195 7.195 28 F -0.196 7.196 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.008 0.992 32 H 0.030 0.970 33 H -0.011 1.011 34 H 0.261 0.739 35 H 0.035 0.965 36 H 0.062 0.938 37 H 0.364 0.636 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.412 0.588 41 H 0.128 0.872 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.123 0.877 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.262 -20.137 -10.466 26.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.255 5.255 3 C 0.067 3.933 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.101 4.101 13 C 0.045 3.955 14 H 0.126 0.874 15 O -0.340 6.340 16 C -0.032 4.032 17 N -0.360 5.360 18 C 0.104 3.896 19 C -0.198 4.198 20 C -0.119 4.119 21 C -0.172 4.172 22 C -0.181 4.181 23 C -0.001 4.001 24 O -0.219 6.219 25 C -0.066 4.066 26 C 0.219 3.781 27 F -0.177 7.177 28 F -0.177 7.177 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.027 0.973 32 H 0.048 0.952 33 H 0.007 0.993 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.209 0.791 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.249 0.751 41 H 0.146 0.854 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.141 0.859 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 13.574 -19.491 -9.695 25.654 hybrid contribution -0.519 0.600 -0.041 0.795 sum 13.055 -18.891 -9.736 24.942 Atomic orbital electron populations 1.22227 0.88728 0.99995 1.00118 1.62007 1.06609 1.17835 1.39038 1.19771 0.95431 0.81470 0.96594 1.21109 1.34816 0.96793 1.01696 0.91905 1.24984 0.95309 0.97372 0.96976 1.69944 1.38379 1.11500 1.34130 0.86555 0.78606 0.78299 0.83921 1.20098 1.21385 1.20328 1.22590 0.95271 0.98379 0.93871 1.22116 0.96196 0.93634 0.83597 0.87410 1.86696 1.73571 1.35985 1.37740 1.22095 0.82619 0.98949 0.99505 1.44567 1.12246 1.59307 1.19912 1.17251 0.88059 0.93687 0.90575 1.20523 1.00895 1.05102 0.93257 1.20808 0.94340 0.98042 0.98733 1.20617 0.95598 1.03827 0.97117 1.20915 0.99850 1.02179 0.95131 1.18381 0.92031 1.02518 0.87145 1.86073 1.25626 1.74881 1.35331 1.23910 0.84233 1.01626 0.96801 1.22013 0.95274 0.75628 0.85226 1.93056 1.97423 1.30419 1.96752 1.93045 1.76830 1.84999 1.62876 0.93713 0.90403 0.97349 0.95187 0.99333 0.92902 0.94696 0.91931 0.79054 0.91559 0.92238 0.75106 0.85424 0.86134 0.86348 0.85918 0.89245 0.89223 0.85453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.37 60.06 0.56 1.30 16 2 N -0.53 -11.45 4.56 -244.37 -1.11 -12.56 16 3 C 0.19 5.07 4.55 -4.97 -0.02 5.05 16 4 C -0.51 -14.52 8.39 -34.44 -0.29 -14.81 16 5 H 0.06 1.79 7.17 -52.48 -0.38 1.42 16 6 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 7 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 8 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.03 0.49 4.66 -3.82 -0.02 0.47 16 13 C 0.10 1.69 3.12 -26.73 -0.08 1.60 16 14 H 0.11 2.10 6.78 -51.92 -0.35 1.74 16 15 O -0.54 -9.06 12.96 -35.23 -0.46 -9.52 16 16 C 0.09 1.20 4.58 -4.04 -0.02 1.18 16 17 N -0.73 -10.06 5.62 -58.50 -0.33 -10.39 16 18 C 0.21 2.72 6.67 -83.57 -0.56 2.16 16 19 C -0.17 -1.96 9.31 -39.41 -0.37 -2.33 16 20 C -0.10 -0.98 10.04 -39.58 -0.40 -1.37 16 21 C -0.15 -1.40 10.04 -39.56 -0.40 -1.80 16 22 C -0.16 -1.58 9.04 -39.47 -0.36 -1.93 16 23 C 0.05 0.58 6.70 -39.09 -0.26 0.31 16 24 O -0.30 -3.79 9.27 -19.79 -0.18 -3.97 16 25 C 0.01 0.09 4.97 37.16 0.18 0.27 16 26 C 0.27 2.20 5.63 37.16 0.21 2.41 16 27 F -0.20 -2.32 17.28 2.25 0.04 -2.28 16 28 F -0.20 -2.25 17.28 2.25 0.04 -2.22 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 1.65 6.67 -51.93 -0.35 1.30 16 31 H 0.01 0.15 8.13 -51.93 -0.42 -0.27 16 32 H 0.03 0.85 6.63 -51.93 -0.34 0.50 16 33 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.03 0.60 8.00 -51.93 -0.42 0.18 16 36 H 0.06 0.89 7.94 -51.93 -0.41 0.47 16 37 H 0.36 4.74 9.04 45.56 0.41 5.15 16 38 H 0.07 0.82 7.95 -51.93 -0.41 0.41 16 39 H 0.06 0.66 7.96 -51.93 -0.41 0.24 16 40 H 0.41 6.37 7.71 -40.82 -0.31 6.05 16 41 H 0.13 1.29 6.74 -52.49 -0.35 0.94 16 42 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 44 H 0.12 0.85 6.30 -52.49 -0.33 0.52 16 45 H 0.09 0.49 7.66 -51.93 -0.40 0.09 16 46 H 0.09 0.51 7.66 -51.93 -0.40 0.11 16 47 H 0.13 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 394.79 15.07 5.95 5.95 Total: -1.00 -34.76 394.79 -8.37 -43.14 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -6.12 Total: 7.18 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -1.91 Total: -6.01 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: -0.71 Total: -49.44 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.64 Total: -13.49 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 0.08 Total: -4.50 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.76 -8.37 -43.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819460857.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.326 kcal (2) G-P(sol) polarization free energy of solvation -34.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds