Wall clock time and date at job start Wed Apr 1 2020 03:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46895 * 111.00162 * 2 1 4 4 C 1.50708 * 109.47416 * 66.04278 * 3 2 1 5 5 H 1.08005 * 119.99504 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00341 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99854 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 119.99929 * 180.02562 * 6 4 3 9 9 H 1.48507 * 109.47246 * 59.99890 * 8 6 4 10 10 H 1.48503 * 109.46824 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47260 * 299.99837 * 8 6 4 12 12 C 1.46901 * 111.00335 * 236.04153 * 2 1 3 13 13 C 1.52999 * 109.47469 * 199.85341 * 12 2 1 14 14 H 1.09013 * 109.46905 * 300.46686 * 13 12 2 15 15 O 1.42895 * 109.47164 * 60.46264 * 13 12 2 16 16 C 1.53001 * 109.47387 * 180.46685 * 13 12 2 17 17 N 1.46498 * 109.47174 * 180.02562 * 16 13 12 18 18 C 1.39960 * 120.00081 * 180.02562 * 17 16 13 19 19 C 1.38727 * 120.08807 * 0.02562 * 18 17 16 20 20 C 1.38226 * 119.97886 * 179.97438 * 19 18 17 21 21 C 1.38251 * 120.16028 * 359.97438 * 20 19 18 22 22 C 1.38283 * 120.18040 * 0.02562 * 21 20 19 23 23 C 1.38500 * 120.01791 * 0.02562 * 22 21 20 24 24 O 1.36015 * 120.07873 * 180.02562 * 23 22 21 25 25 C 1.42898 * 116.99909 * 359.97438 * 24 23 22 26 26 C 1.53001 * 109.47040 * 179.97438 * 25 24 23 27 27 F 1.39899 * 109.47639 * 299.99951 * 26 25 24 28 28 F 1.39898 * 109.46946 * 60.00276 * 26 25 24 29 29 H 1.09000 * 109.46865 * 188.77284 * 1 2 3 30 30 H 1.08999 * 109.47268 * 308.78139 * 1 2 3 31 31 H 1.09003 * 109.46555 * 68.78137 * 1 2 3 32 32 H 1.08999 * 109.47490 * 186.03758 * 3 2 1 33 33 H 1.08997 * 109.47318 * 306.04699 * 3 2 1 34 34 H 0.97002 * 120.00080 * 180.02562 * 7 6 4 35 35 H 1.09003 * 109.46522 * 79.85716 * 12 2 1 36 36 H 1.08998 * 109.47341 * 319.85572 * 12 2 1 37 37 H 0.96696 * 114.00025 * 59.99986 * 15 13 12 38 38 H 1.08997 * 109.46681 * 59.99825 * 16 13 12 39 39 H 1.08999 * 109.46559 * 300.00102 * 16 13 12 40 40 H 0.97003 * 119.99879 * 359.97438 * 17 16 13 41 41 H 1.08001 * 120.00787 * 359.95900 * 19 18 17 42 42 H 1.07996 * 119.91887 * 179.97438 * 20 19 18 43 43 H 1.08004 * 119.90906 * 180.27997 * 21 20 19 44 44 H 1.08000 * 119.98713 * 180.02562 * 22 21 20 45 45 H 1.09001 * 109.47649 * 299.99595 * 25 24 23 46 46 H 1.09005 * 109.47338 * 60.00358 * 25 24 23 47 47 H 1.09001 * 109.47031 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2985 5 1 1.0745 1.5113 2.0488 6 6 2.0267 3.3495 1.5285 7 7 2.7120 4.0019 0.6150 8 14 1.5829 4.1868 3.1382 9 1 2.1756 3.4297 4.2699 10 1 2.1150 5.5732 3.1381 11 1 0.1057 4.2231 3.2865 12 6 1.9955 -0.7661 -1.1375 13 6 3.4449 -1.1667 -0.8555 14 1 4.0464 -0.2706 -0.7025 15 8 3.4945 -1.9798 0.3186 16 6 3.9970 -1.9546 -2.0452 17 7 5.3846 -2.3388 -1.7749 18 6 6.1057 -3.0715 -2.7247 19 6 5.5083 -3.4345 -3.9230 20 6 6.2226 -4.1576 -4.8597 21 6 7.5324 -4.5203 -4.6058 22 6 8.1343 -4.1619 -3.4136 23 6 7.4251 -3.4383 -2.4694 24 8 8.0162 -3.0847 -1.2965 25 6 9.3718 -3.4937 -1.1040 26 6 9.8621 -3.0080 0.2615 27 9 9.7840 -1.6122 0.3156 28 9 9.0614 -3.5592 1.2675 29 1 -0.3633 -1.0157 0.1567 30 1 -0.3634 0.6437 0.8011 31 1 -0.3632 0.3720 -0.9581 32 1 3.0797 1.3444 -0.1081 33 1 1.5611 1.9273 -0.8309 34 1 2.9866 4.9180 0.7769 35 1 1.9567 -0.1526 -2.0377 36 1 1.3924 -1.6624 -1.2823 37 1 2.9803 -2.7961 0.2537 38 1 3.9592 -1.3344 -2.9407 39 1 3.3955 -2.8507 -2.1981 40 1 5.8040 -2.0847 -0.9379 41 1 4.4853 -3.1523 -4.1238 42 1 5.7565 -4.4400 -5.7920 43 1 8.0882 -5.0814 -5.3425 44 1 9.1578 -4.4465 -3.2187 45 1 9.4328 -4.5812 -1.1465 46 1 9.9958 -3.0638 -1.8876 47 1 10.8960 -3.3203 0.4085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819460857.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:53 Heat of formation + Delta-G solvation = -180.074663 kcal Electronic energy + Delta-G solvation = -30143.221799 eV Core-core repulsion = 25575.074255 eV Total energy + Delta-G solvation = -4568.147544 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.90523 -47.97403 -41.19040 -39.62731 -38.47103 -37.31398 -35.80158 -34.62750 -32.14257 -31.49027 -30.63032 -29.60571 -29.07505 -27.04003 -25.51727 -24.76088 -23.38561 -22.92952 -21.99746 -21.74975 -19.59039 -18.63344 -18.46485 -18.40996 -17.87699 -17.60129 -17.20807 -17.09334 -16.61941 -16.48756 -16.41762 -15.95389 -15.61446 -15.44288 -15.25383 -14.90966 -14.85505 -14.56131 -14.40368 -14.33696 -14.13469 -14.00873 -13.89822 -13.32380 -13.28124 -13.12109 -12.92489 -12.61929 -12.56640 -12.48117 -12.34304 -12.23723 -12.04158 -11.99244 -11.84051 -11.57148 -11.36521 -11.02467 -10.87095 -10.62267 -9.45768 -8.96779 -8.22158 -8.11453 -6.31731 0.49896 0.70084 1.38012 1.42361 1.49839 1.99673 2.38095 2.44963 2.85830 2.95575 3.10159 3.24859 3.30944 3.50344 3.60063 3.84455 3.91073 4.01688 4.02943 4.11399 4.22751 4.24768 4.40063 4.40829 4.44169 4.54372 4.55684 4.57999 4.67832 4.72329 4.77052 4.92639 5.05312 5.08863 5.19551 5.23782 5.28423 5.47860 5.62775 5.72422 5.91171 6.04356 6.11043 6.32672 6.54310 6.63599 6.76878 6.83985 6.98028 7.37597 8.88854 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009957 B = 0.002680 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.550281 B =10445.773945 C =12355.960918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.543 5.543 3 C 0.209 3.791 4 C -0.524 4.524 5 H 0.061 0.939 6 C 0.000 4.000 7 N -0.935 5.935 8 Si 0.969 3.031 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.264 1.264 12 C 0.030 3.970 13 C 0.115 3.885 14 H 0.062 0.938 15 O -0.557 6.557 16 C 0.110 3.890 17 N -0.743 5.743 18 C 0.176 3.824 19 C -0.182 4.182 20 C -0.106 4.106 21 C -0.148 4.148 22 C -0.162 4.162 23 C 0.029 3.971 24 O -0.338 6.338 25 C 0.003 3.997 26 C 0.259 3.741 27 F -0.223 7.223 28 F -0.220 7.220 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.014 0.986 32 H 0.000 1.000 33 H -0.039 1.039 34 H 0.264 0.736 35 H 0.033 0.967 36 H 0.103 0.897 37 H 0.382 0.618 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.399 0.601 41 H 0.134 0.866 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.152 0.848 45 H 0.115 0.885 46 H 0.112 0.888 47 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.609 -22.442 -11.345 28.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.267 5.267 3 C 0.083 3.917 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.198 4.198 7 N -0.576 5.576 8 Si 0.793 3.207 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.189 1.189 12 C -0.099 4.099 13 C 0.055 3.945 14 H 0.080 0.920 15 O -0.363 6.363 16 C -0.015 4.015 17 N -0.373 5.373 18 C 0.073 3.927 19 C -0.205 4.205 20 C -0.125 4.125 21 C -0.168 4.168 22 C -0.181 4.181 23 C -0.019 4.019 24 O -0.253 6.253 25 C -0.073 4.073 26 C 0.207 3.793 27 F -0.204 7.204 28 F -0.202 7.202 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.033 0.967 32 H 0.018 0.982 33 H -0.021 1.021 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.121 0.879 37 H 0.230 0.770 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.233 0.767 41 H 0.152 0.848 42 H 0.163 0.837 43 H 0.165 0.835 44 H 0.170 0.830 45 H 0.133 0.867 46 H 0.130 0.870 47 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 13.910 -21.843 -10.607 27.984 hybrid contribution -0.550 1.207 0.160 1.336 sum 13.360 -20.636 -10.446 26.711 Atomic orbital electron populations 1.22248 0.87202 1.01843 0.99586 1.61902 1.08098 1.15027 1.41697 1.19369 0.93529 0.84019 0.94774 1.21457 1.34835 0.97420 1.02513 0.92056 1.25929 0.95041 0.98128 1.00729 1.70079 1.39364 1.11891 1.36258 0.85449 0.78983 0.77140 0.79135 1.19673 1.20721 1.18854 1.22703 0.96102 0.99061 0.92057 1.21837 0.95227 0.92677 0.84788 0.92020 1.86650 1.74268 1.37036 1.38361 1.21901 0.82768 0.99344 0.97496 1.44527 1.12503 1.60412 1.19848 1.17617 0.88969 0.94921 0.91192 1.20745 1.01474 1.05257 0.93023 1.21162 0.94718 0.97349 0.99228 1.21049 0.95560 1.02913 0.97296 1.21284 1.01054 1.01107 0.94627 1.18674 0.92198 1.03241 0.87781 1.86036 1.27895 1.75628 1.35764 1.24263 0.82597 1.03335 0.97094 1.22857 0.97635 0.73999 0.84846 1.92994 1.97637 1.32934 1.96858 1.92988 1.77924 1.85220 1.64054 0.89890 0.92732 0.96726 0.98196 1.02140 0.92724 0.94857 0.87879 0.77002 0.91374 0.89699 0.76696 0.84770 0.83730 0.83489 0.83049 0.86693 0.87037 0.79781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.49 9.37 127.69 1.20 2.69 16 2 N -0.54 -23.73 4.56 -927.05 -4.22 -27.95 16 3 C 0.21 11.57 4.55 85.56 0.39 11.96 16 4 C -0.52 -31.01 8.39 25.60 0.21 -30.80 16 5 H 0.06 3.57 7.17 -2.91 -0.02 3.55 16 6 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 7 N -0.94 -58.40 13.29 21.45 0.28 -58.11 16 8 Si 0.97 46.11 29.54 68.60 2.03 48.14 16 9 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 12 C 0.03 1.00 4.66 86.30 0.40 1.40 16 13 C 0.12 3.84 3.12 30.59 0.10 3.93 16 14 H 0.06 2.63 6.78 -2.38 -0.02 2.62 16 15 O -0.56 -19.17 12.96 -148.98 -1.93 -21.10 16 16 C 0.11 2.83 4.58 86.38 0.40 3.23 16 17 N -0.74 -21.31 5.62 -338.99 -1.91 -23.21 16 18 C 0.18 4.59 6.67 38.22 0.25 4.85 16 19 C -0.18 -3.90 9.31 22.38 0.21 -3.70 16 20 C -0.11 -1.81 10.04 22.27 0.22 -1.58 16 21 C -0.15 -2.30 10.04 22.28 0.22 -2.08 16 22 C -0.16 -2.79 9.04 22.34 0.20 -2.59 16 23 C 0.03 0.69 6.70 22.59 0.15 0.84 16 24 O -0.34 -8.51 9.27 -93.72 -0.87 -9.38 16 25 C 0.00 0.04 4.97 71.98 0.36 0.40 16 26 C 0.26 3.98 5.63 71.98 0.41 4.39 16 27 F -0.22 -5.44 17.28 44.97 0.78 -4.66 16 28 F -0.22 -5.13 17.28 44.97 0.78 -4.35 16 29 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.05 2.31 6.67 -2.39 -0.02 2.29 16 31 H 0.01 0.52 8.13 -2.39 -0.02 0.50 16 32 H 0.00 0.00 6.63 -2.39 -0.02 -0.02 16 33 H -0.04 -2.32 8.12 -2.39 -0.02 -2.34 16 34 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 35 H 0.03 1.14 8.00 -2.39 -0.02 1.12 16 36 H 0.10 2.64 7.94 -2.39 -0.02 2.62 16 37 H 0.38 9.63 9.04 -74.06 -0.67 8.96 16 38 H 0.07 1.70 7.95 -2.39 -0.02 1.68 16 39 H 0.09 1.74 7.96 -2.39 -0.02 1.72 16 40 H 0.40 13.30 7.71 -92.71 -0.71 12.59 16 41 H 0.13 2.55 6.74 -2.91 -0.02 2.53 16 42 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 43 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 44 H 0.15 1.59 6.30 -2.91 -0.02 1.57 16 45 H 0.12 0.98 7.66 -2.39 -0.02 0.96 16 46 H 0.11 1.03 7.66 -2.38 -0.02 1.01 16 47 H 0.19 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -80.21 394.79 -0.26 -80.48 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: -0.38 Total: 26.78 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 5.18 Total: -6.62 kcal Atomic # 7 Polarization: -103.43 SS G_CDS: -5.85 Total: -109.28 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -2.80 Total: -30.48 kcal Atomic # 9 Polarization: -10.56 SS G_CDS: 1.55 Total: -9.01 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -80.21 -0.26 -80.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819460857.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.599 kcal (2) G-P(sol) polarization free energy of solvation -80.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds