Wall clock time and date at job start Wed Apr 1 2020 03:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46905 * 111.00151 * 2 1 4 4 C 1.50697 * 109.47122 * 293.95716 * 3 2 1 5 5 H 1.08009 * 119.99875 * 359.97438 * 4 3 2 6 6 C 1.37880 * 120.00206 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99542 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00276 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47151 * 59.99678 * 8 6 4 10 10 H 1.48497 * 109.47326 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47179 * 300.00190 * 8 6 4 12 12 C 1.46898 * 111.00169 * 123.95513 * 2 1 3 13 13 C 1.52994 * 109.47361 * 164.01072 * 12 2 1 14 14 H 1.08999 * 109.47503 * 58.51120 * 13 12 2 15 15 O 1.42899 * 109.47287 * 298.51028 * 13 12 2 16 16 C 1.52999 * 109.47262 * 178.50806 * 13 12 2 17 17 N 1.46904 * 109.47194 * 185.00039 * 16 13 12 18 18 C 1.46904 * 110.99743 * 180.02562 * 17 16 13 19 19 C 1.52998 * 109.46830 * 179.97438 * 18 17 16 20 20 H 1.08999 * 109.47185 * 304.99882 * 19 18 17 21 21 O 1.42902 * 109.47379 * 64.99977 * 19 18 17 22 22 C 1.50704 * 109.47321 * 184.99893 * 19 18 17 23 23 C 1.38419 * 120.02594 * 104.99935 * 22 19 18 24 24 F 1.35097 * 120.01115 * 359.97438 * 23 22 19 25 25 C 1.38470 * 119.97247 * 179.97438 * 23 22 19 26 26 C 1.38217 * 120.02653 * 0.26860 * 25 23 22 27 27 C 1.38209 * 120.04858 * 359.45501 * 26 25 23 28 28 C 1.38419 * 120.02148 * 284.97848 * 22 19 18 29 29 F 1.35096 * 120.01866 * 359.97438 * 28 22 19 30 30 H 1.09004 * 109.47337 * 301.53030 * 1 2 3 31 31 H 1.09002 * 109.47199 * 61.52931 * 1 2 3 32 32 H 1.09001 * 109.47200 * 181.52748 * 1 2 3 33 33 H 1.09001 * 109.46619 * 53.95579 * 3 2 1 34 34 H 1.09001 * 109.47235 * 173.95061 * 3 2 1 35 35 H 0.96999 * 119.99449 * 180.02562 * 7 6 4 36 36 H 1.09004 * 109.47409 * 44.00799 * 12 2 1 37 37 H 1.09004 * 109.47157 * 284.01273 * 12 2 1 38 38 H 0.96707 * 113.99888 * 299.99877 * 15 13 12 39 39 H 1.09000 * 109.47003 * 65.00050 * 16 13 12 40 40 H 1.09002 * 109.47404 * 304.99804 * 16 13 12 41 41 H 1.00893 * 111.00048 * 56.04875 * 17 16 13 42 42 H 1.08999 * 109.47558 * 59.99805 * 18 17 16 43 43 H 1.08999 * 109.47065 * 299.99515 * 18 17 16 44 44 H 0.96701 * 113.99923 * 59.99919 * 21 19 18 45 45 H 1.08000 * 119.98921 * 179.97438 * 25 23 22 46 46 H 1.07998 * 119.97188 * 179.70999 * 26 25 23 47 47 H 1.07999 * 119.98619 * 180.25471 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0745 1.5112 -2.0488 6 6 2.0276 3.3492 -1.5289 7 7 2.7129 4.0016 -0.6153 8 14 1.5838 4.1866 -3.1386 9 1 0.1066 4.2238 -3.2864 10 1 2.1159 5.5729 -3.1386 11 1 2.1754 3.4288 -4.2704 12 6 1.9954 -0.7660 1.1375 13 6 3.4727 -1.0839 0.8984 14 1 4.0282 -0.1550 0.7698 15 8 3.6033 -1.8838 -0.2786 16 6 4.0307 -1.8495 2.0998 17 7 5.4753 -2.0502 1.9246 18 6 6.0465 -2.7842 3.0617 19 6 7.5489 -2.9740 2.8433 20 1 7.7178 -3.4607 1.8828 21 8 8.1962 -1.7000 2.8522 22 6 8.1126 -3.8315 3.9470 23 6 8.4425 -5.1525 3.6979 24 9 8.2587 -5.6740 2.4652 25 6 8.9609 -5.9393 4.7126 26 6 9.1438 -5.4076 5.9752 27 6 8.8202 -4.0871 6.2236 28 6 8.3013 -3.2985 5.2104 29 9 7.9807 -2.0091 5.4548 30 1 -0.3634 0.5374 0.8760 31 1 -0.3634 0.4899 -0.9034 32 1 -0.3633 -1.0273 0.0274 33 1 1.5611 1.9273 0.8310 34 1 3.0797 1.3444 0.1083 35 1 2.9874 4.9177 -0.7773 36 1 1.4356 -1.6957 1.2399 37 1 1.8933 -0.1782 2.0498 38 1 3.1333 -2.7278 -0.2347 39 1 3.5359 -2.8178 2.1753 40 1 3.8511 -1.2777 3.0103 41 1 5.9487 -1.1697 1.7877 42 1 5.5657 -3.7590 3.1435 43 1 5.8809 -2.2192 3.9790 44 1 8.0878 -1.2094 3.6784 45 1 9.2180 -6.9701 4.5186 46 1 9.5438 -6.0233 6.7672 47 1 8.9673 -3.6715 7.2095 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843085128.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:23 Heat of formation + Delta-G solvation = -154.993203 kcal Electronic energy + Delta-G solvation = -29960.785041 eV Core-core repulsion = 25393.725111 eV Total energy + Delta-G solvation = -4567.059930 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.71112 -49.46985 -39.71074 -38.30423 -37.54039 -35.67704 -34.51562 -32.43941 -32.32419 -30.86607 -30.05817 -27.91858 -27.20347 -25.37584 -23.80022 -23.43806 -22.88684 -21.98064 -21.43935 -19.96981 -18.75265 -18.03925 -17.45649 -16.74468 -16.52359 -16.43512 -16.14090 -16.00336 -15.72656 -15.60262 -15.15457 -15.04621 -14.82838 -14.66157 -14.57070 -14.07995 -13.93793 -13.36408 -13.30735 -13.15244 -12.95360 -12.62261 -12.52180 -12.41706 -12.20144 -11.92212 -11.74089 -11.35668 -11.32526 -11.11153 -10.88999 -10.67977 -10.62307 -10.54747 -10.30275 -9.70827 -9.55724 -9.38066 -9.32479 -9.08493 -8.44145 -8.36489 -7.16414 -5.97048 -3.97252 0.35465 0.39757 2.75224 3.29112 3.38585 3.42094 3.46020 3.63246 3.82763 3.98089 4.11742 4.26819 4.36823 4.48891 4.55338 4.71245 4.77600 4.96120 4.97997 5.14299 5.19541 5.30793 5.35148 5.36327 5.38292 5.41057 5.48549 5.56878 5.64294 5.72308 5.75453 5.77629 6.06769 6.12585 6.16343 6.36419 6.53747 6.74443 6.89090 7.26678 7.32149 7.34657 7.36089 7.85207 8.13440 8.22473 8.31742 8.60876 9.09451 9.66288 11.14122 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018331 B = 0.001981 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.099368 B =14129.398163 C =14562.960370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.531 5.531 3 C 0.193 3.807 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.026 3.974 13 C 0.118 3.882 14 H 0.102 0.898 15 O -0.530 6.530 16 C 0.029 3.971 17 N -0.673 5.673 18 C 0.034 3.966 19 C 0.150 3.850 20 H 0.127 0.873 21 O -0.549 6.549 22 C -0.187 4.187 23 C 0.143 3.857 24 F -0.123 7.123 25 C -0.162 4.162 26 C -0.061 4.061 27 C -0.161 4.161 28 C 0.135 3.865 29 F -0.127 7.127 30 H 0.009 0.991 31 H 0.073 0.927 32 H 0.042 0.958 33 H -0.013 1.013 34 H 0.031 0.969 35 H 0.261 0.739 36 H 0.060 0.940 37 H 0.028 0.972 38 H 0.360 0.640 39 H 0.072 0.928 40 H 0.035 0.965 41 H 0.352 0.648 42 H 0.080 0.920 43 H 0.033 0.967 44 H 0.374 0.626 45 H 0.146 0.854 46 H 0.146 0.854 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.374 -21.556 17.890 30.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.255 5.255 3 C 0.068 3.932 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.104 4.104 13 C 0.058 3.942 14 H 0.120 0.880 15 O -0.332 6.332 16 C -0.101 4.101 17 N -0.305 5.305 18 C -0.096 4.096 19 C 0.090 3.910 20 H 0.145 0.855 21 O -0.357 6.357 22 C -0.189 4.189 23 C 0.124 3.876 24 F -0.101 7.101 25 C -0.181 4.181 26 C -0.080 4.080 27 C -0.180 4.180 28 C 0.115 3.885 29 F -0.105 7.105 30 H 0.028 0.972 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.005 0.995 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.046 0.954 38 H 0.205 0.795 39 H 0.090 0.910 40 H 0.053 0.947 41 H 0.172 0.828 42 H 0.099 0.901 43 H 0.052 0.948 44 H 0.225 0.775 45 H 0.163 0.837 46 H 0.163 0.837 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 13.043 -21.776 16.266 30.148 hybrid contribution -1.096 1.447 1.451 2.324 sum 11.947 -20.329 17.717 29.494 Atomic orbital electron populations 1.22194 0.88886 0.98853 1.00901 1.62031 1.06466 1.17846 1.39136 1.19772 0.95505 0.81438 0.96507 1.21115 1.34636 0.96788 1.01677 0.91932 1.24992 0.95354 0.97390 0.96996 1.69948 1.38505 1.11469 1.34135 0.86546 0.78570 0.78263 0.83942 1.20381 1.21418 1.20079 1.22678 0.95949 0.98176 0.93562 1.21865 0.94503 0.94072 0.83763 0.88046 1.86704 1.75406 1.33056 1.38030 1.22742 0.88640 1.00440 0.98306 1.60271 1.03193 1.27123 1.39915 1.22578 0.94087 1.00064 0.92832 1.20790 0.90348 0.83136 0.96678 0.85509 1.86687 1.76532 1.29869 1.42604 1.20690 1.06458 0.95541 0.96236 1.17150 0.98856 0.90740 0.80897 1.91566 1.92675 1.86281 1.39592 1.21281 1.02729 1.01372 0.92698 1.20904 0.96547 0.94158 0.96346 1.21238 1.02408 0.94756 0.99589 1.17185 0.99293 0.79128 0.92883 1.91402 1.90361 1.34514 1.94263 0.97229 0.90780 0.93885 0.99491 0.95054 0.92951 0.92129 0.95359 0.79507 0.91002 0.94685 0.82814 0.90142 0.94849 0.77527 0.83658 0.83654 0.83725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 9.32 60.06 0.56 1.36 16 2 N -0.53 -11.75 4.60 -244.37 -1.12 -12.88 16 3 C 0.19 5.15 4.57 -4.97 -0.02 5.13 16 4 C -0.50 -14.61 8.54 -34.44 -0.29 -14.91 16 5 H 0.06 1.80 7.10 -52.48 -0.37 1.43 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.34 13.29 55.43 0.74 -26.61 16 8 Si 0.90 22.31 29.54 -169.99 -5.02 17.29 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.03 0.46 4.63 -3.83 -0.02 0.45 16 13 C 0.12 2.01 3.17 -26.73 -0.08 1.92 16 14 H 0.10 2.04 6.55 -51.93 -0.34 1.70 16 15 O -0.53 -9.54 13.18 -35.23 -0.46 -10.00 16 16 C 0.03 0.38 5.32 -3.82 -0.02 0.36 16 17 N -0.67 -8.91 6.45 -113.77 -0.73 -9.64 16 18 C 0.03 0.37 5.29 -3.82 -0.02 0.35 16 19 C 0.15 1.63 3.27 -27.88 -0.09 1.53 16 20 H 0.13 1.52 7.27 -51.93 -0.38 1.14 16 21 O -0.55 -6.61 12.76 -35.23 -0.45 -7.06 16 22 C -0.19 -1.70 4.98 -104.49 -0.52 -2.22 16 23 C 0.14 1.20 7.24 -39.43 -0.29 0.91 16 24 F -0.12 -1.19 16.27 2.25 0.04 -1.15 16 25 C -0.16 -0.93 10.03 -39.50 -0.40 -1.32 16 26 C -0.06 -0.27 10.04 -39.60 -0.40 -0.67 16 27 C -0.16 -0.91 10.03 -39.50 -0.40 -1.31 16 28 C 0.13 1.09 7.04 -39.43 -0.28 0.81 16 29 F -0.13 -1.10 14.09 2.25 0.03 -1.06 16 30 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 31 H 0.07 1.57 6.90 -51.93 -0.36 1.21 16 32 H 0.04 0.71 7.97 -51.93 -0.41 0.30 16 33 H -0.01 -0.36 8.11 -51.93 -0.42 -0.78 16 34 H 0.03 0.89 6.38 -51.93 -0.33 0.56 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.06 0.91 7.88 -51.93 -0.41 0.50 16 37 H 0.03 0.51 8.05 -51.93 -0.42 0.09 16 38 H 0.36 5.04 9.05 45.56 0.41 5.46 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.35 5.03 8.29 -39.30 -0.33 4.70 16 42 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.03 0.35 7.75 -51.93 -0.40 -0.05 16 44 H 0.37 3.75 6.35 45.56 0.29 4.04 16 45 H 0.15 0.52 8.06 -52.49 -0.42 0.10 16 46 H 0.15 0.21 8.06 -52.49 -0.42 -0.22 16 47 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16 LS Contribution 393.10 15.07 5.92 5.92 Total: -1.00 -33.65 393.10 -8.99 -42.64 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -5.56 Total: 8.70 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -2.36 Total: -6.13 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -1.12 Total: -49.12 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.91 Total: -17.07 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.07 Total: -2.22 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.65 -8.99 -42.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843085128.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.358 kcal (2) G-P(sol) polarization free energy of solvation -33.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds