Wall clock time and date at job start Wed Apr 1 2020 03:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46905 * 111.00151 * 2 1 4 4 C 1.50697 * 109.47122 * 293.95716 * 3 2 1 5 5 H 1.08009 * 119.99875 * 359.97438 * 4 3 2 6 6 C 1.37880 * 120.00206 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99542 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00276 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47151 * 59.99678 * 8 6 4 10 10 H 1.48497 * 109.47326 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47179 * 300.00190 * 8 6 4 12 12 C 1.46898 * 111.00169 * 123.95513 * 2 1 3 13 13 C 1.52994 * 109.47361 * 164.01072 * 12 2 1 14 14 H 1.08999 * 109.47503 * 58.51120 * 13 12 2 15 15 O 1.42899 * 109.47287 * 298.51028 * 13 12 2 16 16 C 1.52999 * 109.47262 * 178.50806 * 13 12 2 17 17 N 1.46904 * 109.47194 * 185.00039 * 16 13 12 18 18 C 1.46904 * 110.99743 * 180.02562 * 17 16 13 19 19 C 1.52998 * 109.46830 * 179.97438 * 18 17 16 20 20 H 1.08999 * 109.47185 * 304.99882 * 19 18 17 21 21 O 1.42902 * 109.47379 * 64.99977 * 19 18 17 22 22 C 1.50704 * 109.47321 * 184.99893 * 19 18 17 23 23 C 1.38419 * 120.02594 * 104.99935 * 22 19 18 24 24 F 1.35097 * 120.01115 * 359.97438 * 23 22 19 25 25 C 1.38470 * 119.97247 * 179.97438 * 23 22 19 26 26 C 1.38217 * 120.02653 * 0.26860 * 25 23 22 27 27 C 1.38209 * 120.04858 * 359.45501 * 26 25 23 28 28 C 1.38419 * 120.02148 * 284.97848 * 22 19 18 29 29 F 1.35096 * 120.01866 * 359.97438 * 28 22 19 30 30 H 1.09004 * 109.47337 * 301.53030 * 1 2 3 31 31 H 1.09002 * 109.47199 * 61.52931 * 1 2 3 32 32 H 1.09001 * 109.47200 * 181.52748 * 1 2 3 33 33 H 1.09001 * 109.46619 * 53.95579 * 3 2 1 34 34 H 1.09001 * 109.47235 * 173.95061 * 3 2 1 35 35 H 0.96999 * 119.99449 * 180.02562 * 7 6 4 36 36 H 1.09004 * 109.47409 * 44.00799 * 12 2 1 37 37 H 1.09004 * 109.47157 * 284.01273 * 12 2 1 38 38 H 0.96707 * 113.99888 * 299.99877 * 15 13 12 39 39 H 1.09000 * 109.47003 * 65.00050 * 16 13 12 40 40 H 1.09002 * 109.47404 * 304.99804 * 16 13 12 41 41 H 1.00893 * 111.00048 * 56.04875 * 17 16 13 42 42 H 1.08999 * 109.47558 * 59.99805 * 18 17 16 43 43 H 1.08999 * 109.47065 * 299.99515 * 18 17 16 44 44 H 0.96701 * 113.99923 * 59.99919 * 21 19 18 45 45 H 1.08000 * 119.98921 * 179.97438 * 25 23 22 46 46 H 1.07998 * 119.97188 * 179.70999 * 26 25 23 47 47 H 1.07999 * 119.98619 * 180.25471 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0745 1.5112 -2.0488 6 6 2.0276 3.3492 -1.5289 7 7 2.7129 4.0016 -0.6153 8 14 1.5838 4.1866 -3.1386 9 1 0.1066 4.2238 -3.2864 10 1 2.1159 5.5729 -3.1386 11 1 2.1754 3.4288 -4.2704 12 6 1.9954 -0.7660 1.1375 13 6 3.4727 -1.0839 0.8984 14 1 4.0282 -0.1550 0.7698 15 8 3.6033 -1.8838 -0.2786 16 6 4.0307 -1.8495 2.0998 17 7 5.4753 -2.0502 1.9246 18 6 6.0465 -2.7842 3.0617 19 6 7.5489 -2.9740 2.8433 20 1 7.7178 -3.4607 1.8828 21 8 8.1962 -1.7000 2.8522 22 6 8.1126 -3.8315 3.9470 23 6 8.4425 -5.1525 3.6979 24 9 8.2587 -5.6740 2.4652 25 6 8.9609 -5.9393 4.7126 26 6 9.1438 -5.4076 5.9752 27 6 8.8202 -4.0871 6.2236 28 6 8.3013 -3.2985 5.2104 29 9 7.9807 -2.0091 5.4548 30 1 -0.3634 0.5374 0.8760 31 1 -0.3634 0.4899 -0.9034 32 1 -0.3633 -1.0273 0.0274 33 1 1.5611 1.9273 0.8310 34 1 3.0797 1.3444 0.1083 35 1 2.9874 4.9177 -0.7773 36 1 1.4356 -1.6957 1.2399 37 1 1.8933 -0.1782 2.0498 38 1 3.1333 -2.7278 -0.2347 39 1 3.5359 -2.8178 2.1753 40 1 3.8511 -1.2777 3.0103 41 1 5.9487 -1.1697 1.7877 42 1 5.5657 -3.7590 3.1435 43 1 5.8809 -2.2192 3.9790 44 1 8.0878 -1.2094 3.6784 45 1 9.2180 -6.9701 4.5186 46 1 9.5438 -6.0233 6.7672 47 1 8.9673 -3.6715 7.2095 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843085128.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:22 Heat of formation + Delta-G solvation = -183.249731 kcal Electronic energy + Delta-G solvation = -29962.010336 eV Core-core repulsion = 25393.725111 eV Total energy + Delta-G solvation = -4568.285225 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.30651 -50.11057 -40.34369 -39.55855 -38.51777 -37.21908 -35.69982 -34.60931 -33.01973 -31.34541 -31.30436 -29.46492 -28.76766 -26.67991 -25.31519 -24.11773 -23.86354 -22.97932 -22.58819 -21.67141 -19.32596 -18.70191 -18.61487 -18.16671 -17.79472 -17.20710 -17.02264 -16.81585 -16.68792 -16.57138 -16.41100 -16.20445 -15.99765 -15.83945 -15.53550 -15.45972 -15.18050 -14.77520 -14.65669 -14.05435 -13.92915 -13.86072 -13.57286 -13.27850 -13.14642 -13.01492 -12.96283 -12.89383 -12.73158 -12.60307 -12.53072 -12.33743 -12.17422 -12.10130 -11.53341 -11.42268 -11.32874 -10.70811 -10.60450 -10.02056 -9.83350 -9.47618 -8.96115 -8.21012 -6.30394 -0.15566 -0.09873 1.39011 1.43467 1.50982 2.27330 2.39883 2.72985 2.76679 3.11136 3.24180 3.26099 3.31773 3.52556 3.63396 3.70799 3.77724 3.88984 3.96302 4.05483 4.17628 4.19462 4.34192 4.40785 4.50479 4.53310 4.58983 4.62744 4.68660 4.70745 4.76407 4.81143 5.00527 5.02169 5.06067 5.09741 5.15675 5.21620 5.29840 5.63959 5.69592 5.89298 6.06034 6.20282 6.34111 6.46239 6.64175 6.85013 7.12354 7.38700 8.90012 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018331 B = 0.001981 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.099368 B =14129.398163 C =14562.960370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.543 5.543 3 C 0.210 3.790 4 C -0.524 4.524 5 H 0.061 0.939 6 C -0.002 4.002 7 N -0.935 5.935 8 Si 0.970 3.030 9 H -0.265 1.265 10 H -0.282 1.282 11 H -0.271 1.271 12 C 0.027 3.973 13 C 0.125 3.875 14 H 0.058 0.942 15 O -0.552 6.552 16 C 0.042 3.958 17 N -0.685 5.685 18 C 0.042 3.958 19 C 0.152 3.848 20 H 0.108 0.892 21 O -0.567 6.567 22 C -0.203 4.203 23 C 0.120 3.880 24 F -0.138 7.138 25 C -0.155 4.155 26 C -0.047 4.047 27 C -0.155 4.155 28 C 0.116 3.884 29 F -0.136 7.136 30 H 0.008 0.992 31 H 0.054 0.946 32 H 0.084 0.916 33 H -0.042 1.042 34 H 0.003 0.997 35 H 0.264 0.736 36 H 0.100 0.900 37 H 0.027 0.973 38 H 0.378 0.622 39 H 0.097 0.903 40 H 0.041 0.959 41 H 0.342 0.658 42 H 0.090 0.910 43 H 0.039 0.961 44 H 0.380 0.620 45 H 0.169 0.831 46 H 0.186 0.814 47 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.185 -23.843 19.191 32.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.267 5.267 3 C 0.084 3.916 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.200 4.200 7 N -0.576 5.576 8 Si 0.794 3.206 9 H -0.190 1.190 10 H -0.207 1.207 11 H -0.196 1.196 12 C -0.102 4.102 13 C 0.065 3.935 14 H 0.076 0.924 15 O -0.358 6.358 16 C -0.087 4.087 17 N -0.316 5.316 18 C -0.087 4.087 19 C 0.093 3.907 20 H 0.126 0.874 21 O -0.377 6.377 22 C -0.206 4.206 23 C 0.101 3.899 24 F -0.116 7.116 25 C -0.174 4.174 26 C -0.065 4.065 27 C -0.174 4.174 28 C 0.096 3.904 29 F -0.114 7.114 30 H 0.027 0.973 31 H 0.073 0.927 32 H 0.102 0.898 33 H -0.024 1.024 34 H 0.021 0.979 35 H 0.073 0.927 36 H 0.118 0.882 37 H 0.045 0.955 38 H 0.226 0.774 39 H 0.115 0.885 40 H 0.059 0.941 41 H 0.160 0.840 42 H 0.108 0.892 43 H 0.057 0.943 44 H 0.232 0.768 45 H 0.187 0.813 46 H 0.203 0.797 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 12.835 -24.103 17.582 32.478 hybrid contribution -0.992 2.064 1.117 2.548 sum 11.843 -22.039 18.699 31.235 Atomic orbital electron populations 1.22219 0.87358 1.01189 0.99888 1.61928 1.07967 1.15141 1.41683 1.19376 0.93700 0.83866 0.94695 1.21455 1.34795 0.97462 1.02481 0.92093 1.25948 0.95064 0.98131 1.00807 1.70081 1.39372 1.11869 1.36233 0.85426 0.78906 0.77122 0.79114 1.18979 1.20707 1.19578 1.22790 0.96661 0.98930 0.91797 1.21655 0.93767 0.93029 0.85055 0.92410 1.86653 1.76044 1.34280 1.38802 1.22568 0.88707 1.01061 0.96395 1.60293 1.03242 1.26694 1.41412 1.22554 0.94124 1.00031 0.92012 1.20649 0.90376 0.82869 0.96845 0.87389 1.86644 1.76898 1.30776 1.43376 1.20529 1.08059 0.95832 0.96174 1.17462 1.00332 0.90970 0.81146 1.91523 1.93008 1.86406 1.40684 1.21633 1.01231 1.02146 0.92372 1.21392 0.94671 0.93819 0.96624 1.21607 1.00908 0.95049 0.99834 1.17440 1.00479 0.79176 0.93261 1.91372 1.90619 1.35198 1.94261 0.97334 0.92697 0.89782 1.02396 0.97887 0.92732 0.88220 0.95520 0.77391 0.88508 0.94106 0.83994 0.89196 0.94327 0.76801 0.81344 0.79709 0.81422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.62 9.32 127.69 1.19 2.81 16 2 N -0.54 -24.19 4.60 -927.06 -4.27 -28.45 16 3 C 0.21 11.70 4.57 85.55 0.39 12.09 16 4 C -0.52 -31.17 8.54 25.60 0.22 -30.95 16 5 H 0.06 3.57 7.10 -2.91 -0.02 3.54 16 6 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 7 N -0.93 -58.34 13.29 21.45 0.28 -58.06 16 8 Si 0.97 46.20 29.54 68.60 2.03 48.23 16 9 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 12 C 0.03 0.95 4.63 86.30 0.40 1.35 16 13 C 0.13 4.32 3.17 30.59 0.10 4.41 16 14 H 0.06 2.50 6.55 -2.39 -0.02 2.49 16 15 O -0.55 -19.90 13.18 -148.98 -1.96 -21.86 16 16 C 0.04 1.10 5.32 86.30 0.46 1.56 16 17 N -0.69 -18.56 6.45 -513.87 -3.31 -21.87 16 18 C 0.04 0.92 5.29 86.30 0.46 1.38 16 19 C 0.15 3.46 3.27 29.85 0.10 3.55 16 20 H 0.11 2.80 7.27 -2.39 -0.02 2.78 16 21 O -0.57 -14.58 12.76 -148.98 -1.90 -16.48 16 22 C -0.20 -3.72 4.98 -19.78 -0.10 -3.82 16 23 C 0.12 1.95 7.24 22.37 0.16 2.11 16 24 F -0.14 -2.72 16.27 44.97 0.73 -1.99 16 25 C -0.16 -1.39 10.03 22.32 0.22 -1.16 16 26 C -0.05 -0.25 10.04 22.26 0.22 -0.02 16 27 C -0.16 -1.36 10.03 22.32 0.22 -1.13 16 28 C 0.12 1.78 7.04 22.37 0.16 1.94 16 29 F -0.14 -2.34 14.09 44.97 0.63 -1.71 16 30 H 0.01 0.32 8.13 -2.39 -0.02 0.30 16 31 H 0.05 2.31 6.90 -2.39 -0.02 2.30 16 32 H 0.08 2.56 7.97 -2.39 -0.02 2.54 16 33 H -0.04 -2.49 8.11 -2.39 -0.02 -2.51 16 34 H 0.00 0.19 6.38 -2.39 -0.02 0.17 16 35 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 36 H 0.10 2.69 7.88 -2.38 -0.02 2.67 16 37 H 0.03 0.95 8.05 -2.38 -0.02 0.93 16 38 H 0.38 10.07 9.05 -74.05 -0.67 9.40 16 39 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.34 10.40 8.29 -89.70 -0.74 9.66 16 42 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.04 0.81 7.75 -2.39 -0.02 0.79 16 44 H 0.38 8.20 6.35 -74.06 -0.47 7.73 16 45 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 46 H 0.19 -0.47 8.06 -2.91 -0.02 -0.49 16 47 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 Total: -1.00 -76.19 393.10 -3.97 -80.15 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: -0.86 Total: 27.56 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 4.66 Total: -5.53 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: -7.30 Total: -108.38 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -3.86 Total: -38.33 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 1.37 Total: -3.69 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -76.19 -3.97 -80.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843085128.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.099 kcal (2) G-P(sol) polarization free energy of solvation -76.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds