Wall clock time and date at job start Wed Apr 1 2020 03:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 111.00379 * 2 1 4 4 C 1.50693 * 109.47088 * 66.04356 * 3 2 1 5 5 H 1.08000 * 120.00300 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00181 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99601 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00382 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47176 * 59.99937 * 8 6 4 10 10 H 1.48499 * 109.47009 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47015 * 300.00165 * 8 6 4 12 12 C 1.46901 * 110.99896 * 236.04132 * 2 1 3 13 13 C 1.53001 * 109.47292 * 199.85347 * 12 2 1 14 14 H 1.09002 * 109.47148 * 300.46623 * 13 12 2 15 15 O 1.42900 * 109.47199 * 60.46183 * 13 12 2 16 16 C 1.52997 * 109.47319 * 180.46690 * 13 12 2 17 17 N 1.46899 * 109.47265 * 180.02562 * 16 13 12 18 18 C 1.46900 * 111.00181 * 180.02562 * 17 16 13 19 19 C 1.53001 * 109.47121 * 179.97438 * 18 17 16 20 20 H 1.08992 * 109.47141 * 304.99314 * 19 18 17 21 21 O 1.42896 * 109.47103 * 64.99865 * 19 18 17 22 22 C 1.50703 * 109.46856 * 184.99697 * 19 18 17 23 23 C 1.38421 * 120.02485 * 104.99822 * 22 19 18 24 24 F 1.35095 * 120.01166 * 0.02562 * 23 22 19 25 25 C 1.38476 * 119.96959 * 179.97438 * 23 22 19 26 26 C 1.38198 * 120.03058 * 0.28301 * 25 23 22 27 27 C 1.38219 * 120.04949 * 359.43991 * 26 25 23 28 28 C 1.38418 * 120.02433 * 284.97663 * 22 19 18 29 29 F 1.35103 * 120.01546 * 359.97438 * 28 22 19 30 30 H 1.09003 * 109.47436 * 188.78028 * 1 2 3 31 31 H 1.09000 * 109.47456 * 308.77537 * 1 2 3 32 32 H 1.08998 * 109.47144 * 68.77791 * 1 2 3 33 33 H 1.09000 * 109.47273 * 186.04664 * 3 2 1 34 34 H 1.08998 * 109.46736 * 306.04767 * 3 2 1 35 35 H 0.97001 * 119.99817 * 180.02562 * 7 6 4 36 36 H 1.08994 * 109.47024 * 79.85355 * 12 2 1 37 37 H 1.09001 * 109.47729 * 319.85280 * 12 2 1 38 38 H 0.96700 * 113.99848 * 60.00360 * 15 13 12 39 39 H 1.08994 * 109.47462 * 59.99581 * 16 13 12 40 40 H 1.09002 * 109.46955 * 300.00051 * 16 13 12 41 41 H 1.00895 * 111.00615 * 56.03891 * 17 16 13 42 42 H 1.09000 * 109.47333 * 59.99537 * 18 17 16 43 43 H 1.09007 * 109.46774 * 299.99799 * 18 17 16 44 44 H 0.96699 * 114.00267 * 60.00056 * 21 19 18 45 45 H 1.08004 * 119.97950 * 180.02562 * 25 23 22 46 46 H 1.08000 * 119.98086 * 179.69931 * 26 25 23 47 47 H 1.07991 * 119.98599 * 180.25742 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0746 1.5113 2.0487 6 6 2.0269 3.3494 1.5284 7 7 2.7121 4.0018 0.6149 8 14 1.5831 4.1868 3.1381 9 1 2.1758 3.4297 4.2698 10 1 2.1153 5.5732 3.1380 11 1 0.1060 4.2230 3.2865 12 6 1.9954 -0.7661 -1.1375 13 6 3.4448 -1.1668 -0.8556 14 1 4.0464 -0.2708 -0.7027 15 8 3.4945 -1.9798 0.3186 16 6 3.9968 -1.9547 -2.0452 17 7 5.3882 -2.3400 -1.7743 18 6 5.9526 -3.0994 -2.8979 19 6 7.3996 -3.4815 -2.5797 20 1 7.9666 -2.5839 -2.3335 21 8 7.4217 -4.3788 -1.4678 22 6 8.0173 -4.1527 -3.7793 23 6 8.9252 -3.4655 -4.5664 24 9 9.2584 -2.1928 -4.2592 25 6 9.4925 -4.0835 -5.6681 26 6 9.1482 -5.3838 -5.9853 27 6 8.2461 -6.0729 -5.1968 28 6 7.6776 -5.4570 -4.0946 29 9 6.7923 -6.1293 -3.3267 30 1 -0.3634 -1.0156 0.1569 31 1 -0.3634 0.6436 0.8012 32 1 -0.3633 0.3720 -0.9580 33 1 3.0798 1.3443 -0.1083 34 1 1.5611 1.9273 -0.8309 35 1 2.9868 4.9179 0.7769 36 1 1.9566 -0.1528 -2.0377 37 1 1.3923 -1.6624 -1.2823 38 1 2.9802 -2.7962 0.2537 39 1 3.9590 -1.3346 -2.9408 40 1 3.3953 -2.8508 -2.1982 41 1 5.4580 -2.8617 -0.9135 42 1 5.9288 -2.4867 -3.7991 43 1 5.3644 -4.0032 -3.0574 44 1 6.9355 -5.2014 -1.6164 45 1 10.2012 -3.5476 -6.2821 46 1 9.5875 -5.8634 -6.8475 47 1 7.9810 -7.0904 -5.4432 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843085131.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:35 Heat of formation + Delta-G solvation = -156.535891 kcal Electronic energy + Delta-G solvation = -29932.931715 eV Core-core repulsion = 25365.804889 eV Total energy + Delta-G solvation = -4567.126826 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.73616 -49.45403 -39.72039 -38.36477 -37.55802 -35.73323 -34.50686 -32.43606 -32.32676 -30.86940 -30.11545 -27.94876 -27.18593 -25.39081 -23.81203 -23.44163 -22.88802 -21.96635 -21.37422 -20.00410 -18.75770 -18.05225 -17.47194 -16.82385 -16.55979 -16.31406 -16.15897 -16.02109 -15.83981 -15.68023 -15.17980 -15.01705 -14.85523 -14.67798 -14.58899 -14.09822 -13.86116 -13.38481 -13.32357 -13.15089 -12.95071 -12.60143 -12.50307 -12.36339 -12.29356 -11.92085 -11.79612 -11.39947 -11.32869 -11.11174 -10.84652 -10.68241 -10.62359 -10.56796 -10.29584 -9.71444 -9.62674 -9.42696 -9.32700 -9.08459 -8.46738 -8.35912 -7.15756 -5.95599 -3.96084 0.35014 0.39565 2.74925 3.28373 3.39102 3.42813 3.46512 3.62489 3.82529 3.96491 4.11456 4.25244 4.36536 4.49678 4.55248 4.70970 4.76915 4.86963 5.01928 5.13587 5.18761 5.30900 5.33872 5.35521 5.38642 5.39987 5.45491 5.56704 5.60887 5.73145 5.76123 5.81717 6.06647 6.16071 6.16237 6.35110 6.57376 6.75541 6.89785 7.24223 7.34094 7.37220 7.40945 7.85883 8.11703 8.17450 8.27093 8.61682 9.10649 9.67334 11.15464 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018008 B = 0.001981 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.512960 B =14129.924582 C =14886.728857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.531 5.531 3 C 0.192 3.808 4 C -0.505 4.505 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.027 3.973 13 C 0.117 3.883 14 H 0.112 0.888 15 O -0.539 6.539 16 C 0.030 3.970 17 N -0.677 5.677 18 C 0.035 3.965 19 C 0.150 3.850 20 H 0.128 0.872 21 O -0.549 6.549 22 C -0.187 4.187 23 C 0.144 3.856 24 F -0.122 7.122 25 C -0.161 4.161 26 C -0.061 4.061 27 C -0.161 4.161 28 C 0.134 3.866 29 F -0.128 7.128 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.007 0.993 33 H 0.032 0.968 34 H -0.012 1.012 35 H 0.261 0.739 36 H 0.033 0.967 37 H 0.057 0.943 38 H 0.358 0.642 39 H 0.078 0.922 40 H 0.028 0.972 41 H 0.356 0.644 42 H 0.081 0.919 43 H 0.033 0.967 44 H 0.373 0.627 45 H 0.146 0.854 46 H 0.146 0.854 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.879 -23.251 -16.986 31.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.255 5.255 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.204 1.204 12 C -0.103 4.103 13 C 0.057 3.943 14 H 0.129 0.871 15 O -0.341 6.341 16 C -0.100 4.100 17 N -0.310 5.310 18 C -0.095 4.095 19 C 0.090 3.910 20 H 0.145 0.855 21 O -0.356 6.356 22 C -0.189 4.189 23 C 0.124 3.876 24 F -0.100 7.100 25 C -0.180 4.180 26 C -0.079 4.079 27 C -0.180 4.180 28 C 0.115 3.885 29 F -0.107 7.107 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.025 0.975 33 H 0.050 0.950 34 H 0.006 0.994 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.076 0.924 38 H 0.203 0.797 39 H 0.096 0.904 40 H 0.046 0.954 41 H 0.177 0.823 42 H 0.099 0.901 43 H 0.051 0.949 44 H 0.223 0.777 45 H 0.164 0.836 46 H 0.164 0.836 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 13.084 -21.703 -16.265 30.112 hybrid contribution -1.716 -0.626 -0.389 1.867 sum 11.368 -22.329 -16.654 30.086 Atomic orbital electron populations 1.22225 0.88950 0.99878 1.00034 1.62021 1.06433 1.17861 1.39162 1.19768 0.95574 0.81433 0.96477 1.21111 1.34728 0.96772 1.01712 0.91943 1.24992 0.95364 0.97392 0.96964 1.69951 1.38401 1.11466 1.34104 0.86553 0.78553 0.78283 0.83966 1.20109 1.21413 1.20387 1.22657 0.95882 0.98066 0.93717 1.21969 0.95220 0.93887 0.83260 0.87073 1.86719 1.73219 1.35772 1.38396 1.22694 0.88151 0.98838 1.00301 1.60214 1.18743 1.46934 1.05104 1.22576 0.93920 0.96973 0.96040 1.20796 0.95490 0.92612 0.82082 0.85465 1.86686 1.77559 1.32789 1.38614 1.20679 1.01964 0.94872 1.01421 1.17167 0.95555 0.79961 0.94885 1.91575 1.90730 1.35291 1.92411 1.21292 1.02739 0.96491 0.97501 1.20903 0.95221 0.93110 0.98701 1.21227 0.99727 1.01917 0.95158 1.17167 0.90757 0.89505 0.91116 1.91391 1.65920 1.79663 1.73681 0.93835 0.90443 0.97456 0.94985 0.99442 0.92936 0.94926 0.92401 0.79716 0.90370 0.95432 0.82313 0.90055 0.94911 0.77672 0.83617 0.83645 0.83751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.37 60.06 0.56 1.31 16 2 N -0.53 -11.74 4.56 -244.38 -1.11 -12.86 16 3 C 0.19 5.17 4.55 -4.98 -0.02 5.14 16 4 C -0.50 -14.66 8.39 -34.44 -0.29 -14.95 16 5 H 0.06 1.80 7.17 -52.49 -0.38 1.42 16 6 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -27.43 13.29 55.43 0.74 -26.70 16 8 Si 0.90 22.33 29.54 -169.99 -5.02 17.31 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.03 0.47 4.66 -3.82 -0.02 0.45 16 13 C 0.12 1.97 3.30 -26.73 -0.09 1.88 16 14 H 0.11 2.29 6.78 -51.93 -0.35 1.94 16 15 O -0.54 -9.22 12.55 -35.23 -0.44 -9.66 16 16 C 0.03 0.40 5.39 -3.83 -0.02 0.38 16 17 N -0.68 -8.93 6.50 -113.78 -0.74 -9.67 16 18 C 0.03 0.38 5.29 -3.82 -0.02 0.36 16 19 C 0.15 1.61 3.28 -27.88 -0.09 1.52 16 20 H 0.13 1.55 7.27 -51.93 -0.38 1.17 16 21 O -0.55 -6.29 12.76 -35.23 -0.45 -6.74 16 22 C -0.19 -1.70 4.98 -104.49 -0.52 -2.22 16 23 C 0.14 1.24 7.25 -39.43 -0.29 0.95 16 24 F -0.12 -1.24 16.27 2.25 0.04 -1.20 16 25 C -0.16 -0.95 10.02 -39.51 -0.40 -1.35 16 26 C -0.06 -0.27 10.04 -39.60 -0.40 -0.67 16 27 C -0.16 -0.88 10.03 -39.50 -0.40 -1.28 16 28 C 0.13 1.04 7.04 -39.43 -0.28 0.77 16 29 F -0.13 -1.02 14.09 2.25 0.03 -0.99 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 1.67 6.67 -51.93 -0.35 1.32 16 32 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 33 H 0.03 0.92 6.63 -51.93 -0.34 0.58 16 34 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.03 0.59 8.00 -51.93 -0.42 0.17 16 37 H 0.06 0.87 7.94 -51.93 -0.41 0.46 16 38 H 0.36 4.63 9.05 45.56 0.41 5.05 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.36 4.87 7.68 -39.29 -0.30 4.56 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.03 0.33 7.75 -51.92 -0.40 -0.08 16 44 H 0.37 3.42 6.35 45.56 0.29 3.71 16 45 H 0.15 0.56 8.06 -52.48 -0.42 0.14 16 46 H 0.15 0.21 8.06 -52.49 -0.42 -0.22 16 47 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 LS Contribution 392.47 15.07 5.91 5.91 Total: -1.00 -33.57 392.47 -8.97 -42.54 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -5.57 Total: 8.28 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -2.36 Total: -6.22 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: -1.12 Total: -49.23 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.89 Total: -16.40 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.07 Total: -2.19 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.57 -8.97 -42.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843085131.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.996 kcal (2) G-P(sol) polarization free energy of solvation -33.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds