Wall clock time and date at job start Wed Apr 1 2020 03:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 111.00379 * 2 1 4 4 C 1.50693 * 109.47088 * 66.04356 * 3 2 1 5 5 H 1.08000 * 120.00300 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00181 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99601 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00382 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47176 * 59.99937 * 8 6 4 10 10 H 1.48499 * 109.47009 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47015 * 300.00165 * 8 6 4 12 12 C 1.46901 * 110.99896 * 236.04132 * 2 1 3 13 13 C 1.53001 * 109.47292 * 199.85347 * 12 2 1 14 14 H 1.09002 * 109.47148 * 300.46623 * 13 12 2 15 15 O 1.42900 * 109.47199 * 60.46183 * 13 12 2 16 16 C 1.52997 * 109.47319 * 180.46690 * 13 12 2 17 17 N 1.46899 * 109.47265 * 180.02562 * 16 13 12 18 18 C 1.46900 * 111.00181 * 180.02562 * 17 16 13 19 19 C 1.53001 * 109.47121 * 179.97438 * 18 17 16 20 20 H 1.08992 * 109.47141 * 304.99314 * 19 18 17 21 21 O 1.42896 * 109.47103 * 64.99865 * 19 18 17 22 22 C 1.50703 * 109.46856 * 184.99697 * 19 18 17 23 23 C 1.38421 * 120.02485 * 104.99822 * 22 19 18 24 24 F 1.35095 * 120.01166 * 0.02562 * 23 22 19 25 25 C 1.38476 * 119.96959 * 179.97438 * 23 22 19 26 26 C 1.38198 * 120.03058 * 0.28301 * 25 23 22 27 27 C 1.38219 * 120.04949 * 359.43991 * 26 25 23 28 28 C 1.38418 * 120.02433 * 284.97663 * 22 19 18 29 29 F 1.35103 * 120.01546 * 359.97438 * 28 22 19 30 30 H 1.09003 * 109.47436 * 188.78028 * 1 2 3 31 31 H 1.09000 * 109.47456 * 308.77537 * 1 2 3 32 32 H 1.08998 * 109.47144 * 68.77791 * 1 2 3 33 33 H 1.09000 * 109.47273 * 186.04664 * 3 2 1 34 34 H 1.08998 * 109.46736 * 306.04767 * 3 2 1 35 35 H 0.97001 * 119.99817 * 180.02562 * 7 6 4 36 36 H 1.08994 * 109.47024 * 79.85355 * 12 2 1 37 37 H 1.09001 * 109.47729 * 319.85280 * 12 2 1 38 38 H 0.96700 * 113.99848 * 60.00360 * 15 13 12 39 39 H 1.08994 * 109.47462 * 59.99581 * 16 13 12 40 40 H 1.09002 * 109.46955 * 300.00051 * 16 13 12 41 41 H 1.00895 * 111.00615 * 56.03891 * 17 16 13 42 42 H 1.09000 * 109.47333 * 59.99537 * 18 17 16 43 43 H 1.09007 * 109.46774 * 299.99799 * 18 17 16 44 44 H 0.96699 * 114.00267 * 60.00056 * 21 19 18 45 45 H 1.08004 * 119.97950 * 180.02562 * 25 23 22 46 46 H 1.08000 * 119.98086 * 179.69931 * 26 25 23 47 47 H 1.07991 * 119.98599 * 180.25742 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0746 1.5113 2.0487 6 6 2.0269 3.3494 1.5284 7 7 2.7121 4.0018 0.6149 8 14 1.5831 4.1868 3.1381 9 1 2.1758 3.4297 4.2698 10 1 2.1153 5.5732 3.1380 11 1 0.1060 4.2230 3.2865 12 6 1.9954 -0.7661 -1.1375 13 6 3.4448 -1.1668 -0.8556 14 1 4.0464 -0.2708 -0.7027 15 8 3.4945 -1.9798 0.3186 16 6 3.9968 -1.9547 -2.0452 17 7 5.3882 -2.3400 -1.7743 18 6 5.9526 -3.0994 -2.8979 19 6 7.3996 -3.4815 -2.5797 20 1 7.9666 -2.5839 -2.3335 21 8 7.4217 -4.3788 -1.4678 22 6 8.0173 -4.1527 -3.7793 23 6 8.9252 -3.4655 -4.5664 24 9 9.2584 -2.1928 -4.2592 25 6 9.4925 -4.0835 -5.6681 26 6 9.1482 -5.3838 -5.9853 27 6 8.2461 -6.0729 -5.1968 28 6 7.6776 -5.4570 -4.0946 29 9 6.7923 -6.1293 -3.3267 30 1 -0.3634 -1.0156 0.1569 31 1 -0.3634 0.6436 0.8012 32 1 -0.3633 0.3720 -0.9580 33 1 3.0798 1.3443 -0.1083 34 1 1.5611 1.9273 -0.8309 35 1 2.9868 4.9179 0.7769 36 1 1.9566 -0.1528 -2.0377 37 1 1.3923 -1.6624 -1.2823 38 1 2.9802 -2.7962 0.2537 39 1 3.9590 -1.3346 -2.9408 40 1 3.3953 -2.8508 -2.1982 41 1 5.4580 -2.8617 -0.9135 42 1 5.9288 -2.4867 -3.7991 43 1 5.3644 -4.0032 -3.0574 44 1 6.9355 -5.2014 -1.6164 45 1 10.2012 -3.5476 -6.2821 46 1 9.5875 -5.8634 -6.8475 47 1 7.9810 -7.0904 -5.4432 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843085131.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:34 Heat of formation + Delta-G solvation = -184.671719 kcal Electronic energy + Delta-G solvation = -29934.151776 eV Core-core repulsion = 25365.804889 eV Total energy + Delta-G solvation = -4568.346887 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.29201 -50.12635 -40.35108 -39.59777 -38.50952 -37.28348 -35.65005 -34.60932 -33.00859 -31.36474 -31.34501 -29.45505 -28.77879 -26.70278 -25.30912 -24.12858 -23.87505 -22.88379 -22.58087 -21.71033 -19.32734 -18.71566 -18.61260 -18.16355 -17.74044 -17.32874 -17.15128 -16.73183 -16.66089 -16.59454 -16.43151 -16.21962 -16.02240 -15.80136 -15.53007 -15.44188 -15.21976 -14.81267 -14.54499 -14.01326 -13.91656 -13.83818 -13.64937 -13.29516 -13.16509 -13.05700 -12.95009 -12.88859 -12.74370 -12.59061 -12.53688 -12.31062 -12.15893 -12.10108 -11.55145 -11.44264 -11.33151 -10.77838 -10.60631 -10.02322 -9.83491 -9.46120 -8.95630 -8.20268 -6.30005 -0.15625 -0.10068 1.39246 1.43926 1.51404 2.27247 2.40239 2.73071 2.76640 3.11739 3.23901 3.26290 3.31516 3.53743 3.65135 3.68229 3.75421 3.91679 3.96398 4.09275 4.12252 4.17743 4.31555 4.39860 4.50277 4.55597 4.60101 4.62362 4.68474 4.74664 4.76988 4.80858 5.00551 5.01740 5.07687 5.12061 5.15604 5.23243 5.29939 5.64212 5.69487 5.90672 6.06752 6.33595 6.34939 6.49890 6.64094 6.85639 7.03434 7.39071 8.90795 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018008 B = 0.001981 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.512960 B =14129.924582 C =14886.728857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.543 5.543 3 C 0.210 3.790 4 C -0.524 4.524 5 H 0.062 0.938 6 C -0.002 4.002 7 N -0.935 5.935 8 Si 0.971 3.029 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.264 1.264 12 C 0.028 3.972 13 C 0.126 3.874 14 H 0.061 0.939 15 O -0.557 6.557 16 C 0.044 3.956 17 N -0.695 5.695 18 C 0.043 3.957 19 C 0.153 3.847 20 H 0.103 0.897 21 O -0.563 6.563 22 C -0.204 4.204 23 C 0.116 3.884 24 F -0.141 7.141 25 C -0.157 4.157 26 C -0.048 4.048 27 C -0.154 4.154 28 C 0.120 3.880 29 F -0.132 7.132 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.012 0.988 33 H 0.001 0.999 34 H -0.041 1.041 35 H 0.264 0.736 36 H 0.028 0.972 37 H 0.098 0.902 38 H 0.379 0.621 39 H 0.078 0.922 40 H 0.057 0.943 41 H 0.353 0.647 42 H 0.080 0.920 43 H 0.047 0.953 44 H 0.381 0.619 45 H 0.166 0.834 46 H 0.186 0.814 47 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.445 -25.834 -18.120 33.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.266 5.266 3 C 0.084 3.916 4 C -0.562 4.562 5 H 0.080 0.920 6 C -0.200 4.200 7 N -0.576 5.576 8 Si 0.795 3.205 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.189 1.189 12 C -0.101 4.101 13 C 0.065 3.935 14 H 0.079 0.921 15 O -0.363 6.363 16 C -0.086 4.086 17 N -0.329 5.329 18 C -0.086 4.086 19 C 0.093 3.907 20 H 0.121 0.879 21 O -0.373 6.373 22 C -0.206 4.206 23 C 0.097 3.903 24 F -0.119 7.119 25 C -0.176 4.176 26 C -0.065 4.065 27 C -0.172 4.172 28 C 0.100 3.900 29 F -0.111 7.111 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.031 0.969 33 H 0.019 0.981 34 H -0.023 1.023 35 H 0.073 0.927 36 H 0.046 0.954 37 H 0.116 0.884 38 H 0.226 0.774 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.173 0.827 42 H 0.099 0.901 43 H 0.066 0.934 44 H 0.233 0.767 45 H 0.184 0.816 46 H 0.203 0.797 47 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 12.629 -24.326 -17.414 32.473 hybrid contribution -1.542 0.071 -0.099 1.547 sum 11.087 -24.255 -17.513 31.905 Atomic orbital electron populations 1.22250 0.87376 1.01785 0.99502 1.61927 1.07963 1.15069 1.41682 1.19363 0.93596 0.83957 0.94730 1.21450 1.34838 0.97425 1.02474 0.92009 1.25962 0.95065 0.98151 1.00826 1.70089 1.39337 1.11876 1.36273 0.85417 0.78925 0.77101 0.79058 1.19583 1.20742 1.18908 1.22768 0.96793 0.98708 0.91878 1.21681 0.94150 0.92948 0.84691 0.92066 1.86667 1.73956 1.36911 1.38742 1.22484 0.88535 0.99362 0.98200 1.60170 1.18959 1.47909 1.05812 1.22528 0.94049 0.97116 0.94939 1.20595 0.95245 0.92019 0.82826 0.87939 1.86647 1.77921 1.33391 1.39354 1.20530 1.03079 0.95782 1.01227 1.17532 0.96767 0.79652 0.96365 1.91523 1.91033 1.36588 1.92766 1.21624 1.02337 0.97210 0.96398 1.21391 0.93898 0.92160 0.99081 1.21617 0.98802 1.02977 0.93831 1.17368 0.91369 0.89151 0.92084 1.91370 1.66161 1.79581 1.73997 0.89951 0.92662 0.96921 0.98111 1.02348 0.92729 0.95359 0.88388 0.77371 0.90327 0.92468 0.82715 0.90139 0.93443 0.76671 0.81622 0.79718 0.81131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.51 9.37 127.69 1.20 2.71 16 2 N -0.54 -24.15 4.56 -927.08 -4.22 -28.38 16 3 C 0.21 11.77 4.55 85.56 0.39 12.16 16 4 C -0.52 -31.22 8.39 25.60 0.21 -31.00 16 5 H 0.06 3.61 7.17 -2.91 -0.02 3.59 16 6 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 7 N -0.94 -58.74 13.29 21.45 0.28 -58.45 16 8 Si 0.97 46.28 29.54 68.60 2.03 48.30 16 9 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 11 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 12 C 0.03 0.96 4.66 86.30 0.40 1.36 16 13 C 0.13 4.31 3.30 30.59 0.10 4.41 16 14 H 0.06 2.72 6.78 -2.39 -0.02 2.71 16 15 O -0.56 -18.99 12.55 -148.98 -1.87 -20.86 16 16 C 0.04 1.14 5.39 86.30 0.47 1.60 16 17 N -0.70 -18.72 6.50 -513.89 -3.34 -22.06 16 18 C 0.04 0.94 5.29 86.30 0.46 1.40 16 19 C 0.15 3.45 3.28 29.85 0.10 3.55 16 20 H 0.10 2.76 7.27 -2.39 -0.02 2.74 16 21 O -0.56 -13.36 12.76 -148.98 -1.90 -15.26 16 22 C -0.20 -3.72 4.98 -19.78 -0.10 -3.82 16 23 C 0.12 2.01 7.25 22.37 0.16 2.17 16 24 F -0.14 -3.07 16.27 44.97 0.73 -2.34 16 25 C -0.16 -1.54 10.02 22.32 0.22 -1.32 16 26 C -0.05 -0.25 10.04 22.26 0.22 -0.03 16 27 C -0.15 -1.22 10.03 22.32 0.22 -1.00 16 28 C 0.12 1.71 7.04 22.37 0.16 1.87 16 29 F -0.13 -1.96 14.09 44.97 0.63 -1.33 16 30 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.05 2.36 6.67 -2.39 -0.02 2.35 16 32 H 0.01 0.46 8.13 -2.39 -0.02 0.44 16 33 H 0.00 0.05 6.63 -2.39 -0.02 0.04 16 34 H -0.04 -2.48 8.12 -2.39 -0.02 -2.50 16 35 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 36 H 0.03 1.02 8.00 -2.39 -0.02 1.00 16 37 H 0.10 2.64 7.94 -2.39 -0.02 2.62 16 38 H 0.38 9.13 9.05 -74.06 -0.67 8.46 16 39 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 41 H 0.35 9.83 7.68 -89.70 -0.69 9.14 16 42 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.05 0.90 7.75 -2.38 -0.02 0.88 16 44 H 0.38 7.06 6.35 -74.06 -0.47 6.59 16 45 H 0.17 0.89 8.06 -2.91 -0.02 0.86 16 46 H 0.19 -0.45 8.06 -2.91 -0.02 -0.48 16 47 H 0.17 0.44 8.06 -2.92 -0.02 0.42 16 Total: -1.00 -76.62 392.47 -3.79 -80.41 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: -0.81 Total: 25.58 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 4.68 Total: -5.62 kcal Atomic # 7 Polarization: -101.62 SS G_CDS: -7.28 Total: -108.90 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -3.77 Total: -36.11 kcal Atomic # 9 Polarization: -5.03 SS G_CDS: 1.37 Total: -3.66 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.30 kcal Total: -76.62 -3.79 -80.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843085131.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.262 kcal (2) G-P(sol) polarization free energy of solvation -76.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds