Wall clock time and date at job start Wed Apr 1 2020 04:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99923 * 2 1 4 4 H 1.48493 * 109.47083 * 270.00432 * 3 2 1 5 5 H 1.48507 * 109.46833 * 29.99919 * 3 2 1 6 6 H 1.48496 * 109.47040 * 149.99913 * 3 2 1 7 7 C 1.37873 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99924 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00034 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47248 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47092 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46734 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.46679 * 304.99537 * 12 11 10 14 14 N 1.46895 * 109.47547 * 64.99925 * 12 11 10 15 15 C 1.50697 * 109.47049 * 185.00169 * 12 11 10 16 16 N 1.30966 * 126.43338 * 104.99347 * 15 12 11 17 17 C 1.35258 * 105.57978 * 180.02562 * 16 15 12 18 18 C 1.48268 * 126.41978 * 179.97438 * 17 16 15 19 19 C 1.39342 * 120.95814 * 0.02860 * 18 17 16 20 20 N 1.32351 * 119.04111 * 179.72523 * 19 18 17 21 21 C 1.31860 * 121.13989 * 0.50721 * 20 19 18 22 22 C 1.50706 * 118.93122 * 179.75525 * 21 20 19 23 23 C 1.53000 * 117.49681 * 299.72812 * 22 21 20 24 24 C 1.53002 * 60.02940 * 107.47810 * 23 22 21 25 25 N 1.31733 * 122.13706 * 359.47312 * 21 20 19 26 26 C 1.32924 * 120.81493 * 0.26323 * 25 21 20 27 27 N 1.38238 * 120.61451 * 180.02562 * 26 25 21 28 28 N 1.30830 * 107.15666 * 0.24542 * 17 16 15 29 29 O 1.21290 * 110.08008 * 359.57765 * 28 17 16 30 30 H 0.97002 * 120.00252 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47312 * 60.00210 * 9 7 2 32 32 H 1.08998 * 109.47512 * 299.99861 * 9 7 2 33 33 H 1.08998 * 109.47034 * 59.99743 * 10 9 7 34 34 H 1.08997 * 109.47103 * 299.99716 * 10 9 7 35 35 H 1.08998 * 109.47316 * 60.00008 * 11 10 9 36 36 H 1.08997 * 109.46989 * 299.99877 * 11 10 9 37 37 H 1.00903 * 110.99838 * 296.04887 * 14 12 11 38 38 H 1.00903 * 110.99731 * 59.99305 * 14 12 11 39 39 H 1.08003 * 120.47650 * 359.97111 * 19 18 17 40 40 H 1.08999 * 115.54993 * 154.06005 * 22 21 20 41 41 H 1.09002 * 117.49833 * 214.97915 * 23 22 21 42 42 H 1.09002 * 117.49953 * 359.97438 * 23 22 21 43 43 H 1.09000 * 117.49996 * 107.50493 * 24 23 22 44 44 H 1.08999 * 117.49664 * 252.51862 * 24 23 22 45 45 H 0.96997 * 120.00005 * 359.97438 * 27 26 25 46 46 H 0.96999 * 119.99712 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 0.0001 12 6 2.4747 -6.1500 0.0008 13 1 3.1588 -6.0435 -0.8412 14 7 3.2378 -6.1412 1.2559 15 6 1.7254 -7.4516 -0.1225 16 7 1.6420 -8.2028 -1.1920 17 6 0.8744 -9.2580 -0.8359 18 6 0.4844 -10.3954 -1.7034 19 6 0.9070 -10.4634 -3.0294 20 7 0.5409 -11.4987 -3.7682 21 6 -0.2208 -12.4544 -3.2730 22 6 -0.6125 -13.6079 -4.1603 23 6 -1.4102 -13.2865 -5.4257 24 6 0.0581 -13.7029 -5.5330 25 7 -0.6460 -12.4364 -2.0263 26 6 -0.3228 -11.4375 -1.2110 27 7 -0.7709 -11.4231 0.0967 28 7 0.5359 -9.0840 0.4158 29 8 1.0206 -8.0559 0.8392 30 1 -0.4850 0.8400 0.0004 31 1 0.6242 -2.5567 -0.8903 32 1 0.6248 -2.5571 0.8897 33 1 2.8721 -3.6043 0.8894 34 1 2.8720 -3.6043 -0.8905 35 1 0.8534 -5.0451 -0.8896 36 1 0.8541 -5.0445 0.8903 37 1 3.7995 -5.3064 1.3318 38 1 2.6255 -6.2385 2.0520 39 1 1.5277 -9.6844 -3.4471 40 1 -0.8403 -14.5410 -3.6451 41 1 -2.1626 -14.0085 -5.7433 42 1 -1.6522 -12.2409 -5.6162 43 1 0.2718 -14.6987 -5.9212 44 1 0.7823 -12.9311 -5.7938 45 1 -1.3268 -12.1461 0.4268 46 1 -0.5293 -10.6899 0.6840 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848628143.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:09 Heat of formation + Delta-G solvation = 130.347022 kcal Electronic energy + Delta-G solvation = -28361.514531 eV Core-core repulsion = 24289.809819 eV Total energy + Delta-G solvation = -4071.704712 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.70413 -41.40948 -37.78130 -37.39217 -36.06578 -35.75903 -33.86351 -33.25410 -32.02476 -31.33868 -30.59352 -28.06255 -26.30240 -25.68622 -24.39571 -23.61305 -23.02833 -22.67528 -21.67743 -20.88591 -20.29895 -18.68161 -18.22147 -17.81396 -17.74603 -16.49944 -16.42660 -16.32036 -15.74497 -15.66500 -15.39107 -14.92768 -14.70873 -14.57858 -14.17221 -14.06369 -13.77944 -13.15874 -12.61543 -12.53526 -12.50376 -12.25697 -12.17092 -11.86221 -11.84124 -11.42991 -11.39541 -11.28605 -11.18651 -10.89152 -10.83198 -10.75793 -10.66309 -10.50656 -9.88154 -9.86404 -9.57451 -9.54539 -9.24023 -8.88110 -8.61999 -8.42932 -6.07686 -4.11045 0.16690 1.01430 1.08460 2.17110 2.51230 2.85811 3.19776 3.24072 3.27100 3.33886 3.36287 3.49449 3.68333 3.74054 3.98540 4.24379 4.39001 4.50281 4.51891 4.61387 4.65880 4.92718 4.96581 5.03463 5.13363 5.21942 5.28460 5.30970 5.37702 5.48617 5.62230 5.70759 5.75827 5.79506 5.87396 5.98983 6.09345 6.41138 6.44418 6.60392 6.75304 6.81094 6.91721 7.23146 7.24529 7.56269 7.67767 7.85800 7.90609 7.97751 8.31715 8.95999 9.53912 11.03443 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018040 B = 0.001771 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.759023 B =15802.100256 C =16542.690201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.108 4.108 11 C -0.153 4.153 12 C 0.182 3.818 13 H 0.128 0.872 14 N -0.839 5.839 15 C 0.226 3.774 16 N -0.477 5.477 17 C 0.240 3.760 18 C -0.207 4.207 19 C 0.235 3.765 20 N -0.557 5.557 21 C 0.407 3.593 22 C -0.107 4.107 23 C -0.153 4.153 24 C -0.150 4.150 25 N -0.575 5.575 26 C 0.475 3.525 27 N -0.819 5.819 28 N -0.406 5.406 29 O 0.080 5.920 30 H 0.261 0.739 31 H 0.016 0.984 32 H 0.016 0.984 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.365 0.635 38 H 0.348 0.652 39 H 0.181 0.819 40 H 0.130 0.870 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.113 0.887 45 H 0.408 0.592 46 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.026 -27.202 -4.161 27.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.193 4.193 12 C 0.068 3.932 13 H 0.146 0.854 14 N -0.373 5.373 15 C 0.005 3.995 16 N -0.210 5.210 17 C -0.030 4.030 18 C -0.220 4.220 19 C 0.070 3.930 20 N -0.275 5.275 21 C 0.140 3.860 22 C -0.128 4.128 23 C -0.191 4.191 24 C -0.188 4.188 25 N -0.299 5.299 26 C 0.226 3.774 27 N -0.367 5.367 28 N -0.118 5.118 29 O 0.026 5.974 30 H 0.071 0.929 31 H 0.035 0.965 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.182 0.818 38 H 0.161 0.839 39 H 0.198 0.802 40 H 0.147 0.853 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.132 0.868 45 H 0.238 0.762 46 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -0.405 -29.077 -4.882 29.487 hybrid contribution -0.116 2.716 1.421 3.067 sum -0.522 -26.362 -3.461 26.593 Atomic orbital electron populations 1.69960 1.06097 1.26724 1.50576 1.25034 0.94851 0.99359 0.95213 0.86588 0.79823 0.83399 0.78158 1.20626 1.21222 1.19832 1.21220 0.93033 0.90986 1.50951 0.92586 1.19081 0.93906 0.91195 0.97360 1.21659 0.99240 0.92973 1.00698 1.22572 0.98470 0.94772 1.03499 1.20195 0.93635 0.82857 0.96540 0.85421 1.58927 1.27936 1.47466 1.02967 1.28857 0.91879 0.97057 0.81731 1.71955 1.19229 1.03435 1.26422 1.23277 0.95658 0.94907 0.89197 1.18328 1.11465 0.95820 0.96409 1.23164 0.89662 0.93053 0.87149 1.68254 1.17317 1.03644 1.38321 1.21990 0.85774 0.91586 0.86695 1.20681 1.07797 0.95787 0.88493 1.23000 0.95176 1.03163 0.97806 1.23064 0.96104 1.03651 0.95955 1.67757 1.29921 1.26406 1.05864 1.18356 0.85480 0.87099 0.86475 1.42773 1.55529 1.29715 1.08655 1.74180 1.21199 1.03249 1.13200 1.85191 1.48437 1.25323 1.38427 0.92930 0.96516 0.96607 0.93061 0.92598 0.90930 0.91264 0.81789 0.83916 0.80240 0.85258 0.87837 0.88341 0.88093 0.86848 0.76175 0.73838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -14.11 9.11 -34.44 -0.31 -14.42 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -1.88 4.92 -26.73 -0.13 -2.01 16 11 C -0.15 -2.18 4.84 -26.73 -0.13 -2.31 16 12 C 0.18 2.16 3.35 -68.87 -0.23 1.93 16 13 H 0.13 1.47 8.14 -51.93 -0.42 1.04 16 14 N -0.84 -8.82 9.17 -5.66 -0.05 -8.87 16 15 C 0.23 2.95 7.30 -12.98 -0.09 2.86 16 16 N -0.48 -6.60 11.35 -9.88 -0.11 -6.71 16 17 C 0.24 3.28 7.80 -156.09 -1.22 2.06 16 18 C -0.21 -2.63 5.93 -104.43 -0.62 -3.25 16 19 C 0.24 2.76 10.98 -16.92 -0.19 2.57 16 20 N -0.56 -6.45 9.31 -10.53 -0.10 -6.55 16 21 C 0.41 4.59 7.31 -157.19 -1.15 3.44 16 22 C -0.11 -0.89 6.23 -91.73 -0.57 -1.46 16 23 C -0.15 -1.03 10.23 -26.73 -0.27 -1.31 16 24 C -0.15 -1.00 10.01 -26.69 -0.27 -1.27 16 25 N -0.57 -6.86 10.35 -9.76 -0.10 -6.96 16 26 C 0.48 5.75 7.83 -154.71 -1.21 4.54 16 27 N -0.82 -8.13 8.99 31.39 0.28 -7.85 16 28 N -0.41 -5.38 9.28 30.98 0.29 -5.09 16 29 O 0.08 1.05 11.27 18.03 0.20 1.25 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.82 6.87 -51.93 -0.36 0.47 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.36 3.60 7.55 -39.29 -0.30 3.31 16 38 H 0.35 3.39 8.97 -39.29 -0.35 3.03 16 39 H 0.18 1.84 7.96 -52.48 -0.42 1.42 16 40 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.11 0.88 7.53 -51.93 -0.39 0.49 16 45 H 0.41 3.09 8.95 -40.82 -0.37 2.73 16 46 H 0.42 4.40 5.61 -40.82 -0.23 4.17 16 LS Contribution 391.06 15.07 5.89 5.89 Total: -1.00 -31.35 391.06 -10.79 -42.14 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -6.18 Total: 9.01 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -6.63 Total: -6.77 kcal Atomic # 7 Polarization: -68.49 SS G_CDS: 0.94 Total: -67.55 kcal Atomic # 8 Polarization: 1.05 SS G_CDS: 0.20 Total: 1.25 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.35 -10.79 -42.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848628143.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.489 kcal (2) G-P(sol) polarization free energy of solvation -31.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds