Wall clock time and date at job start Wed Apr 1 2020 04:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99923 * 2 1 4 4 H 1.48493 * 109.47083 * 270.00432 * 3 2 1 5 5 H 1.48507 * 109.46833 * 29.99919 * 3 2 1 6 6 H 1.48496 * 109.47040 * 149.99913 * 3 2 1 7 7 C 1.37873 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99924 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00034 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47248 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47092 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46734 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.46679 * 304.99537 * 12 11 10 14 14 N 1.46895 * 109.47547 * 64.99925 * 12 11 10 15 15 C 1.50697 * 109.47049 * 185.00169 * 12 11 10 16 16 N 1.30966 * 126.43338 * 104.99347 * 15 12 11 17 17 C 1.35258 * 105.57978 * 180.02562 * 16 15 12 18 18 C 1.48268 * 126.41978 * 179.97438 * 17 16 15 19 19 C 1.39342 * 120.95814 * 0.02860 * 18 17 16 20 20 N 1.32351 * 119.04111 * 179.72523 * 19 18 17 21 21 C 1.31860 * 121.13989 * 0.50721 * 20 19 18 22 22 C 1.50706 * 118.93122 * 179.75525 * 21 20 19 23 23 C 1.53000 * 117.49681 * 299.72812 * 22 21 20 24 24 C 1.53002 * 60.02940 * 107.47810 * 23 22 21 25 25 N 1.31733 * 122.13706 * 359.47312 * 21 20 19 26 26 C 1.32924 * 120.81493 * 0.26323 * 25 21 20 27 27 N 1.38238 * 120.61451 * 180.02562 * 26 25 21 28 28 N 1.30830 * 107.15666 * 0.24542 * 17 16 15 29 29 O 1.21290 * 110.08008 * 359.57765 * 28 17 16 30 30 H 0.97002 * 120.00252 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47312 * 60.00210 * 9 7 2 32 32 H 1.08998 * 109.47512 * 299.99861 * 9 7 2 33 33 H 1.08998 * 109.47034 * 59.99743 * 10 9 7 34 34 H 1.08997 * 109.47103 * 299.99716 * 10 9 7 35 35 H 1.08998 * 109.47316 * 60.00008 * 11 10 9 36 36 H 1.08997 * 109.46989 * 299.99877 * 11 10 9 37 37 H 1.00903 * 110.99838 * 296.04887 * 14 12 11 38 38 H 1.00903 * 110.99731 * 59.99305 * 14 12 11 39 39 H 1.08003 * 120.47650 * 359.97111 * 19 18 17 40 40 H 1.08999 * 115.54993 * 154.06005 * 22 21 20 41 41 H 1.09002 * 117.49833 * 214.97915 * 23 22 21 42 42 H 1.09002 * 117.49953 * 359.97438 * 23 22 21 43 43 H 1.09000 * 117.49996 * 107.50493 * 24 23 22 44 44 H 1.08999 * 117.49664 * 252.51862 * 24 23 22 45 45 H 0.96997 * 120.00005 * 359.97438 * 27 26 25 46 46 H 0.96999 * 119.99712 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 0.0001 12 6 2.4747 -6.1500 0.0008 13 1 3.1588 -6.0435 -0.8412 14 7 3.2378 -6.1412 1.2559 15 6 1.7254 -7.4516 -0.1225 16 7 1.6420 -8.2028 -1.1920 17 6 0.8744 -9.2580 -0.8359 18 6 0.4844 -10.3954 -1.7034 19 6 0.9070 -10.4634 -3.0294 20 7 0.5409 -11.4987 -3.7682 21 6 -0.2208 -12.4544 -3.2730 22 6 -0.6125 -13.6079 -4.1603 23 6 -1.4102 -13.2865 -5.4257 24 6 0.0581 -13.7029 -5.5330 25 7 -0.6460 -12.4364 -2.0263 26 6 -0.3228 -11.4375 -1.2110 27 7 -0.7709 -11.4231 0.0967 28 7 0.5359 -9.0840 0.4158 29 8 1.0206 -8.0559 0.8392 30 1 -0.4850 0.8400 0.0004 31 1 0.6242 -2.5567 -0.8903 32 1 0.6248 -2.5571 0.8897 33 1 2.8721 -3.6043 0.8894 34 1 2.8720 -3.6043 -0.8905 35 1 0.8534 -5.0451 -0.8896 36 1 0.8541 -5.0445 0.8903 37 1 3.7995 -5.3064 1.3318 38 1 2.6255 -6.2385 2.0520 39 1 1.5277 -9.6844 -3.4471 40 1 -0.8403 -14.5410 -3.6451 41 1 -2.1626 -14.0085 -5.7433 42 1 -1.6522 -12.2409 -5.6162 43 1 0.2718 -14.6987 -5.9212 44 1 0.7823 -12.9311 -5.7938 45 1 -1.3268 -12.1461 0.4268 46 1 -0.5293 -10.6899 0.6840 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848628143.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:08 Heat of formation + Delta-G solvation = 108.806378 kcal Electronic energy + Delta-G solvation = -28362.448603 eV Core-core repulsion = 24289.809819 eV Total energy + Delta-G solvation = -4072.638784 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.73331 -42.26492 -38.54574 -38.43342 -37.03297 -36.59543 -35.57453 -34.30867 -33.36362 -32.60654 -31.48777 -29.50498 -27.18085 -27.09727 -25.41853 -24.61472 -24.41521 -23.19633 -22.65759 -22.00670 -21.58280 -19.56882 -19.27003 -18.75529 -18.60239 -18.40333 -17.42814 -17.27427 -16.59044 -16.52133 -16.49718 -16.23643 -16.13234 -15.37851 -15.29682 -14.97125 -14.85595 -14.42246 -14.11347 -13.75593 -13.47771 -13.46596 -13.22519 -13.14242 -12.93505 -12.57305 -12.45042 -12.43192 -12.40761 -12.21021 -12.18429 -12.02937 -11.51227 -11.47221 -11.37998 -11.31744 -11.13332 -10.68774 -10.54362 -10.46105 -9.86831 -9.50882 -8.19076 -6.29779 -0.75025 0.07448 0.11914 1.16511 1.42287 1.42619 1.52966 1.53851 1.97605 2.25549 2.42048 2.46628 2.57461 2.84411 3.00225 3.15073 3.20777 3.32776 3.60410 3.78416 3.82800 3.91454 4.04573 4.07105 4.11816 4.23213 4.36071 4.42315 4.50441 4.53367 4.69762 4.77053 4.82733 4.96561 5.03687 5.09453 5.19165 5.20943 5.26074 5.36424 5.54640 5.55212 5.75479 5.87274 5.93049 5.94393 6.25118 6.42432 6.44007 6.88988 6.89208 7.05882 7.40169 8.92506 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018040 B = 0.001771 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.759023 B =15802.100256 C =16542.690201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.962 3.038 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.259 1.259 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.021 3.979 10 C -0.094 4.094 11 C -0.142 4.142 12 C 0.196 3.804 13 H 0.138 0.862 14 N -0.834 5.834 15 C 0.224 3.776 16 N -0.487 5.487 17 C 0.235 3.765 18 C -0.227 4.227 19 C 0.236 3.764 20 N -0.564 5.564 21 C 0.399 3.601 22 C -0.125 4.125 23 C -0.145 4.145 24 C -0.140 4.140 25 N -0.583 5.583 26 C 0.467 3.533 27 N -0.810 5.810 28 N -0.408 5.408 29 O 0.080 5.920 30 H 0.262 0.738 31 H -0.014 1.014 32 H -0.009 1.009 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.371 0.629 38 H 0.354 0.646 39 H 0.190 0.810 40 H 0.142 0.858 41 H 0.127 0.873 42 H 0.084 0.916 43 H 0.125 0.875 44 H 0.100 0.900 45 H 0.418 0.582 46 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.292 -28.182 -4.419 28.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.787 3.213 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.183 1.183 7 C -0.577 4.577 8 H 0.085 0.915 9 C -0.016 4.016 10 C -0.132 4.132 11 C -0.182 4.182 12 C 0.082 3.918 13 H 0.156 0.844 14 N -0.369 5.369 15 C 0.003 3.997 16 N -0.220 5.220 17 C -0.036 4.036 18 C -0.241 4.241 19 C 0.070 3.930 20 N -0.282 5.282 21 C 0.132 3.868 22 C -0.145 4.145 23 C -0.183 4.183 24 C -0.178 4.178 25 N -0.309 5.309 26 C 0.217 3.783 27 N -0.357 5.357 28 N -0.121 5.121 29 O 0.026 5.974 30 H 0.070 0.930 31 H 0.005 0.995 32 H 0.010 0.990 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.189 0.811 38 H 0.168 0.832 39 H 0.207 0.793 40 H 0.160 0.840 41 H 0.145 0.855 42 H 0.103 0.897 43 H 0.143 0.857 44 H 0.118 0.882 45 H 0.251 0.749 46 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 0.870 -30.077 -5.118 30.521 hybrid contribution -0.558 2.964 1.486 3.362 sum 0.311 -27.113 -3.633 27.357 Atomic orbital electron populations 1.70103 1.07882 1.27630 1.52012 1.25991 0.95699 1.03444 0.94968 0.85482 0.78825 0.78605 0.78356 1.20071 1.21215 1.18309 1.21748 0.93804 0.92219 1.49947 0.91541 1.19022 0.94584 0.93332 0.94689 1.21423 0.97945 0.91848 1.01934 1.22386 0.98545 0.94334 1.02985 1.20008 0.92813 0.81257 0.97684 0.84437 1.58926 1.27698 1.47721 1.02572 1.29007 0.91779 0.97283 0.81623 1.71940 1.19591 1.03742 1.26761 1.23480 0.95592 0.95104 0.89405 1.18429 1.12668 0.96115 0.96839 1.23368 0.89408 0.93290 0.86971 1.68335 1.17750 1.03848 1.38284 1.22647 0.85071 0.92117 0.86920 1.20883 1.09441 0.95258 0.88870 1.23076 0.95904 1.03070 0.96280 1.23127 0.95715 1.04535 0.94403 1.67854 1.30375 1.26397 1.06228 1.18546 0.85488 0.87130 0.87119 1.42742 1.55151 1.29892 1.07948 1.74185 1.21338 1.03377 1.13167 1.85179 1.48434 1.25337 1.38433 0.92968 0.99549 0.99048 0.91199 0.91905 0.92129 0.91302 0.81087 0.83242 0.79313 0.84040 0.85495 0.89691 0.85675 0.88163 0.74943 0.74016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.03 13.29 21.45 0.28 -55.75 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 3 Si 0.96 42.96 29.54 68.60 2.03 44.99 16 4 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 7 C -0.54 -29.04 9.11 25.60 0.23 -28.80 16 8 H 0.07 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.02 1.02 4.97 29.85 0.15 1.17 16 10 C -0.09 -3.19 4.92 30.60 0.15 -3.04 16 11 C -0.14 -3.95 4.84 30.60 0.15 -3.80 16 12 C 0.20 4.37 3.35 44.17 0.15 4.52 16 13 H 0.14 2.87 8.14 -2.39 -0.02 2.85 16 14 N -0.83 -15.84 9.17 -171.81 -1.58 -17.41 16 15 C 0.22 5.65 7.30 88.35 0.64 6.30 16 16 N -0.49 -13.20 11.35 -302.45 -3.43 -16.63 16 17 C 0.23 6.34 7.80 137.22 1.07 7.41 16 18 C -0.23 -5.77 5.93 -19.74 -0.12 -5.88 16 19 C 0.24 5.51 10.98 84.88 0.93 6.45 16 20 N -0.56 -12.94 9.31 -187.23 -1.74 -14.69 16 21 C 0.40 8.82 7.31 138.75 1.01 9.83 16 22 C -0.12 -1.90 6.23 -11.51 -0.07 -1.97 16 23 C -0.15 -1.72 10.23 30.60 0.31 -1.41 16 24 C -0.14 -1.63 10.01 30.62 0.31 -1.33 16 25 N -0.58 -13.71 10.35 -184.80 -1.91 -15.62 16 26 C 0.47 11.22 7.83 133.55 1.05 12.27 16 27 N -0.81 -15.78 8.99 -54.61 -0.49 -16.27 16 28 N -0.41 -10.64 9.28 -59.05 -0.55 -11.19 16 29 O 0.08 2.03 11.27 74.58 0.84 2.87 16 30 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 31 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 32 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 33 H 0.07 2.11 6.87 -2.39 -0.02 2.10 16 34 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.37 6.40 7.55 -89.69 -0.68 5.72 16 38 H 0.35 6.21 8.97 -89.69 -0.80 5.41 16 39 H 0.19 3.86 7.96 -2.91 -0.02 3.84 16 40 H 0.14 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.10 1.47 7.53 -2.39 -0.02 1.45 16 45 H 0.42 6.11 8.95 -92.71 -0.83 5.28 16 46 H 0.42 8.64 5.61 -92.71 -0.52 8.12 16 Total: -1.00 -67.92 391.06 -1.88 -69.79 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: -1.76 Total: 27.93 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: 6.43 Total: 1.98 kcal Atomic # 7 Polarization: -138.14 SS G_CDS: -9.42 Total: -147.56 kcal Atomic # 8 Polarization: 2.03 SS G_CDS: 0.84 Total: 2.87 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -67.92 -1.88 -69.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848628143.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.601 kcal (2) G-P(sol) polarization free energy of solvation -67.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds