Wall clock time and date at job start Wed Apr 1 2020 04:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99942 * 2 1 4 4 H 1.48496 * 109.47247 * 240.00294 * 3 2 1 5 5 H 1.48503 * 109.46810 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46719 * 120.00321 * 3 2 1 7 7 C 1.37876 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00074 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00183 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47292 * 180.02562 * 9 7 2 11 11 C 1.46956 * 110.99677 * 170.00200 * 10 9 7 12 12 C 1.53057 * 109.36162 * 183.18894 * 11 10 9 13 13 N 1.46954 * 109.36263 * 301.59585 * 12 11 10 14 14 C 1.46908 * 110.99966 * 183.18687 * 13 12 11 15 15 N 1.46502 * 109.46820 * 46.20340 * 14 13 12 16 16 C 1.35037 * 125.93256 * 94.71820 * 15 14 13 17 17 C 1.35084 * 107.98154 * 179.83613 * 16 15 14 18 18 C 1.40847 * 107.84602 * 0.42511 * 17 16 15 19 19 C 1.48422 * 126.03356 * 179.76208 * 18 17 16 20 20 C 1.39361 * 120.10221 * 179.97438 * 19 18 17 21 21 C 1.38004 * 119.92697 * 179.97438 * 20 19 18 22 22 C 1.38306 * 120.15171 * 359.97438 * 21 20 19 23 23 C 1.38525 * 120.20807 * 0.02562 * 22 21 20 24 24 F 1.35102 * 119.96030 * 180.02562 * 23 22 21 25 25 C 1.38268 * 120.07243 * 359.72475 * 23 22 21 26 26 N 1.31623 * 107.92244 * 359.73440 * 18 17 16 27 27 C 1.46956 * 110.88042 * 59.32532 * 13 12 11 28 28 C 1.46954 * 110.99900 * 293.79852 * 10 9 7 29 29 H 0.96999 * 120.00715 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.46825 * 60.00370 * 9 7 2 31 31 H 1.09002 * 109.47091 * 300.00411 * 9 7 2 32 32 H 1.09002 * 109.48908 * 303.15220 * 11 10 9 33 33 H 1.09002 * 109.49369 * 63.22349 * 11 10 9 34 34 H 1.08997 * 109.48880 * 61.56749 * 12 11 10 35 35 H 1.09004 * 109.48844 * 181.62946 * 12 11 10 36 36 H 1.08997 * 109.47258 * 166.20113 * 14 13 12 37 37 H 1.09001 * 109.46957 * 286.20350 * 14 13 12 38 38 H 1.08009 * 126.00921 * 359.97438 * 16 15 14 39 39 H 1.07999 * 126.07313 * 180.15718 * 17 16 15 40 40 H 1.07994 * 120.03359 * 0.02635 * 20 19 18 41 41 H 1.08000 * 119.92810 * 180.02562 * 21 20 19 42 42 H 1.07996 * 119.89655 * 180.02562 * 22 21 20 43 43 H 1.08002 * 120.07312 * 180.28020 * 25 23 22 44 44 H 1.09002 * 109.48908 * 180.71202 * 27 13 12 45 45 H 1.09002 * 109.49369 * 60.64073 * 27 13 12 46 46 H 1.08997 * 109.49355 * 296.78047 * 28 10 9 47 47 H 1.09004 * 109.48943 * 56.84596 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5210 -4.8939 0.2377 12 6 2.5565 -6.0187 0.3093 13 7 3.3195 -6.0592 -0.9460 14 6 4.2742 -7.1758 -0.9460 15 7 3.6050 -8.3904 -0.4736 16 6 3.0363 -9.3357 -1.2523 17 6 2.5312 -10.2932 -0.4443 18 6 2.7921 -9.9159 0.8874 19 6 2.4064 -10.6768 2.1020 20 6 2.7293 -10.1864 3.3659 21 6 2.3685 -10.8967 4.4928 22 6 1.6866 -12.0938 4.3707 23 6 1.3627 -12.5867 3.1174 24 9 0.6961 -13.7564 3.0040 25 6 1.7153 -11.8799 1.9825 26 7 3.4388 -8.7697 0.8644 27 6 4.0043 -4.7809 -1.1842 28 6 2.9687 -3.6562 -1.2558 29 1 -0.4851 0.8400 0.0004 30 1 0.6242 -2.5567 -0.8904 31 1 0.6247 -2.5571 0.8897 32 1 0.9734 -4.8433 1.1788 33 1 0.8254 -5.0915 -0.5780 34 1 3.2356 -5.8353 1.1420 35 1 2.0486 -6.9718 0.4571 36 1 4.6460 -7.3360 -1.9580 37 1 5.1087 -6.9403 -0.2854 38 1 2.9948 -9.3287 -2.3316 39 1 2.0150 -11.1867 -0.7627 40 1 3.2606 -9.2513 3.4633 41 1 2.6183 -10.5164 5.4723 42 1 1.4059 -12.6460 5.2554 43 1 1.4587 -12.2620 1.0054 44 1 4.5519 -4.8316 -2.1253 45 1 4.6998 -4.5834 -0.3685 46 1 2.2897 -3.8396 -2.0885 47 1 3.4766 -2.7031 -1.4036 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872733031.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:29 Heat of formation + Delta-G solvation = 66.098684 kcal Electronic energy + Delta-G solvation = -28959.461247 eV Core-core repulsion = 24865.050556 eV Total energy + Delta-G solvation = -4094.410690 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.171 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.89376 -42.28134 -40.21039 -39.65973 -36.90565 -34.78838 -33.80666 -31.99756 -31.87447 -31.51101 -30.73010 -29.60718 -27.47250 -25.49534 -24.55875 -24.15186 -23.73429 -23.13985 -21.67521 -21.05312 -20.69263 -18.68571 -18.46501 -17.87198 -17.52507 -17.15960 -17.04190 -16.64599 -16.58089 -16.06155 -15.93797 -15.72037 -15.60646 -15.32456 -15.00864 -14.74259 -14.69676 -14.36953 -14.24999 -14.00880 -13.64741 -13.55856 -13.34999 -13.10778 -13.03537 -12.77863 -12.74988 -12.54502 -12.30439 -12.19743 -12.17424 -12.06530 -11.64445 -11.59054 -11.26491 -11.01011 -10.63449 -9.88248 -9.79325 -9.58697 -9.23491 -9.09439 -8.22330 -6.33591 -0.18687 0.20057 0.98995 1.40617 1.44168 1.44449 1.52231 1.85651 2.38893 2.76428 2.80692 3.09550 3.09835 3.22726 3.47196 3.67408 3.83206 3.89638 4.02353 4.09764 4.10519 4.13271 4.18786 4.27941 4.30936 4.37129 4.43241 4.54380 4.57791 4.71030 4.77750 4.84944 4.87200 4.95018 4.97352 4.98593 5.06791 5.09949 5.18394 5.21189 5.27923 5.47454 5.56652 5.60757 5.69172 5.78965 5.87650 6.00224 6.18800 6.28314 6.54490 6.67195 6.81785 7.36365 8.88954 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.016725 B = 0.002062 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.716792 B =13575.645614 C =14544.502225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.974 3.026 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.523 4.523 8 H 0.066 0.934 9 C 0.210 3.790 10 N -0.545 5.545 11 C 0.060 3.940 12 C 0.088 3.912 13 N -0.558 5.558 14 C 0.302 3.698 15 N -0.371 5.371 16 C 0.079 3.921 17 C -0.272 4.272 18 C 0.093 3.907 19 C 0.002 3.998 20 C -0.115 4.115 21 C -0.088 4.088 22 C -0.145 4.145 23 C 0.084 3.916 24 F -0.144 7.144 25 C -0.133 4.133 26 N -0.311 5.311 27 C 0.074 3.926 28 C 0.067 3.933 29 H 0.265 0.735 30 H -0.040 1.040 31 H -0.002 1.002 32 H 0.061 0.939 33 H 0.018 0.982 34 H 0.031 0.969 35 H 0.073 0.927 36 H 0.149 0.851 37 H 0.068 0.932 38 H 0.211 0.789 39 H 0.169 0.831 40 H 0.128 0.872 41 H 0.161 0.839 42 H 0.159 0.841 43 H 0.152 0.848 44 H 0.116 0.884 45 H 0.044 0.956 46 H 0.019 0.981 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.094 -26.299 0.575 27.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.798 3.202 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.562 4.562 8 H 0.085 0.915 9 C 0.084 3.916 10 N -0.270 5.270 11 C -0.069 4.069 12 C -0.041 4.041 13 N -0.286 5.286 14 C 0.092 3.908 15 N -0.154 5.154 16 C -0.066 4.066 17 C -0.301 4.301 18 C -0.071 4.071 19 C 0.000 4.000 20 C -0.134 4.134 21 C -0.105 4.105 22 C -0.165 4.165 23 C 0.065 3.935 24 F -0.123 7.123 25 C -0.153 4.153 26 N -0.134 5.134 27 C -0.054 4.054 28 C -0.061 4.061 29 H 0.074 0.926 30 H -0.022 1.022 31 H 0.016 0.984 32 H 0.079 0.921 33 H 0.036 0.964 34 H 0.050 0.950 35 H 0.091 0.909 36 H 0.166 0.834 37 H 0.086 0.914 38 H 0.227 0.773 39 H 0.187 0.813 40 H 0.146 0.854 41 H 0.179 0.821 42 H 0.176 0.824 43 H 0.170 0.830 44 H 0.134 0.866 45 H 0.062 0.938 46 H 0.037 0.963 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.575 -25.154 1.153 26.939 hybrid contribution -0.875 0.351 -0.403 1.025 sum 8.699 -24.803 0.750 26.295 Atomic orbital electron populations 1.70091 1.07898 1.28070 1.51560 1.25983 0.95767 1.03432 0.94677 0.85374 0.78083 0.77541 0.79243 1.18800 1.20978 1.19353 1.21393 0.93664 0.90746 1.50357 0.91540 1.19335 0.90084 0.89080 0.93126 1.62237 1.27243 1.02564 1.34912 1.22072 0.95556 0.89838 0.99442 1.21803 0.95240 0.97012 0.90005 1.62512 1.26709 1.04352 1.34977 1.22483 0.89234 0.77103 1.01940 1.48712 1.44941 1.18395 1.03359 1.23101 0.95068 0.88554 0.99892 1.21767 1.12871 1.04872 0.90586 1.20863 0.98782 0.93202 0.94213 1.17698 0.98379 0.93380 0.90542 1.21471 0.99734 1.00497 0.91714 1.21255 0.96165 0.93396 0.99714 1.21534 1.00440 0.97841 0.96654 1.17668 0.97499 0.83500 0.94851 1.91497 1.78336 1.45446 1.97005 1.21148 1.00199 0.94736 0.99245 1.77515 1.22998 1.14900 0.98003 1.22127 0.94694 0.85961 1.02593 1.22020 0.95742 0.98777 0.89588 0.92641 1.02218 0.98389 0.92097 0.96362 0.95044 0.90877 0.83353 0.91418 0.77256 0.81318 0.85383 0.82100 0.82358 0.83032 0.86586 0.93765 0.96279 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.09 13.29 21.45 0.28 -56.80 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.97 44.12 29.54 68.60 2.03 46.15 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.52 -29.85 8.47 25.60 0.22 -29.64 16 8 H 0.07 3.66 7.13 -2.91 -0.02 3.64 16 9 C 0.21 11.59 4.72 85.56 0.40 11.99 16 10 N -0.54 -24.44 4.70 -900.26 -4.23 -28.67 16 11 C 0.06 2.37 5.61 86.31 0.48 2.85 16 12 C 0.09 2.84 4.97 86.31 0.43 3.27 16 13 N -0.56 -14.60 4.93 -908.03 -4.48 -19.08 16 14 C 0.30 5.71 6.46 170.80 1.10 6.81 16 15 N -0.37 -8.00 2.83 -357.69 -1.01 -9.01 16 16 C 0.08 1.34 11.46 83.47 0.96 2.30 16 17 C -0.27 -5.05 10.18 22.18 0.23 -4.83 16 18 C 0.09 2.17 6.99 42.53 0.30 2.47 16 19 C 0.00 0.04 5.88 -20.05 -0.12 -0.07 16 20 C -0.11 -2.26 9.69 22.48 0.22 -2.04 16 21 C -0.09 -1.30 10.03 22.23 0.22 -1.08 16 22 C -0.15 -2.12 10.02 22.35 0.22 -1.90 16 23 C 0.08 1.48 7.29 22.35 0.16 1.65 16 24 F -0.14 -2.70 17.26 44.97 0.78 -1.92 16 25 C -0.13 -2.41 9.55 22.52 0.22 -2.20 16 26 N -0.31 -8.10 10.62 -48.15 -0.51 -8.61 16 27 C 0.07 1.98 5.58 86.31 0.48 2.46 16 28 C 0.07 2.54 5.43 86.31 0.47 3.01 16 29 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 30 H -0.04 -2.40 8.12 -2.39 -0.02 -2.42 16 31 H 0.00 -0.12 8.03 -2.39 -0.02 -0.14 16 32 H 0.06 2.49 8.07 -2.39 -0.02 2.47 16 33 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 2.40 6.19 -2.39 -0.01 2.38 16 36 H 0.15 1.65 8.13 -2.39 -0.02 1.63 16 37 H 0.07 1.30 8.08 -2.39 -0.02 1.28 16 38 H 0.21 1.92 8.06 -2.91 -0.02 1.89 16 39 H 0.17 2.24 7.34 -2.91 -0.02 2.22 16 40 H 0.13 2.69 7.85 -2.91 -0.02 2.67 16 41 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 42 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 43 H 0.15 2.22 7.04 -2.91 -0.02 2.20 16 44 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.08 3.10 6.79 -2.39 -0.02 3.08 16 Total: -1.00 -72.10 388.21 0.28 -71.82 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.97 Total: 10.66 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: 6.45 Total: -4.52 kcal Atomic # 7 Polarization: -112.23 SS G_CDS: -9.95 Total: -122.18 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.78 Total: -1.92 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -72.10 0.28 -71.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872733031.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.916 kcal (2) G-P(sol) polarization free energy of solvation -72.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds