Wall clock time and date at job start Wed Apr 1 2020 04:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86792 * 120.00348 * 2 1 4 4 H 1.48505 * 109.47069 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47368 * 299.99964 * 3 2 1 6 6 H 1.48504 * 109.47185 * 60.00333 * 3 2 1 7 7 C 1.37883 * 119.99570 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99899 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99891 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.46724 * 180.02562 * 9 7 2 11 11 C 1.46964 * 110.99879 * 170.00032 * 10 9 7 12 12 C 1.53051 * 109.36421 * 183.18591 * 11 10 9 13 13 N 1.46948 * 109.36852 * 301.60323 * 12 11 10 14 14 C 1.46899 * 111.00241 * 183.18639 * 13 12 11 15 15 N 1.46505 * 109.47375 * 154.99541 * 14 13 12 16 16 N 1.40014 * 126.26227 * 284.69674 * 15 14 13 17 17 N 1.23648 * 109.31977 * 180.26109 * 16 15 14 18 18 N 1.40022 * 109.31474 * 359.97438 * 17 16 15 19 19 C 1.40134 * 126.25769 * 179.97438 * 18 17 16 20 20 C 1.38859 * 120.06619 * 179.75053 * 19 18 17 21 21 C 1.38114 * 119.92899 * 179.76847 * 20 19 18 22 22 C 1.38284 * 120.06978 * 0.50107 * 21 20 19 23 23 C 1.38283 * 120.13838 * 359.74753 * 22 21 20 24 24 C 1.38118 * 120.06505 * 0.02562 * 23 22 21 25 25 C 1.35048 * 107.48188 * 0.02562 * 18 17 16 26 26 O 1.21810 * 126.80069 * 179.97438 * 25 18 17 27 27 C 1.46958 * 110.88282 * 59.32041 * 13 12 11 28 28 C 1.46953 * 111.00216 * 293.79933 * 10 9 7 29 29 H 0.97004 * 119.99519 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.46907 * 60.00902 * 9 7 2 31 31 H 1.08994 * 109.47223 * 300.00114 * 9 7 2 32 32 H 1.09005 * 109.48490 * 63.22574 * 11 10 9 33 33 H 1.09002 * 109.48890 * 303.15942 * 11 10 9 34 34 H 1.09001 * 109.48767 * 181.63255 * 12 11 10 35 35 H 1.09001 * 109.48349 * 61.57027 * 12 11 10 36 36 H 1.09003 * 109.46688 * 35.00356 * 14 13 12 37 37 H 1.08992 * 109.47389 * 275.00249 * 14 13 12 38 38 H 1.07998 * 120.03499 * 0.02562 * 20 19 18 39 39 H 1.08000 * 119.96585 * 180.27146 * 21 20 19 40 40 H 1.08002 * 119.93500 * 179.72297 * 22 21 20 41 41 H 1.07996 * 119.96998 * 180.02562 * 23 22 21 42 42 H 1.08005 * 120.03527 * 180.02562 * 24 23 22 43 43 H 1.08992 * 109.49042 * 60.64268 * 27 13 12 44 44 H 1.08994 * 109.49083 * 180.71811 * 27 13 12 45 45 H 1.08992 * 109.49140 * 296.78052 * 28 10 9 46 46 H 1.09001 * 109.48774 * 56.84659 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3461 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 7 2.2054 -3.6158 -0.0005 11 6 1.5206 -4.8941 0.2377 12 6 2.5560 -6.0189 0.3093 13 7 3.3191 -6.0594 -0.9459 14 6 4.2737 -7.1760 -0.9459 15 7 4.5690 -7.5661 -2.3268 16 7 3.7291 -8.2921 -3.1800 17 7 4.2911 -8.4502 -4.2700 18 7 5.5518 -7.8421 -4.2336 19 6 6.4859 -7.8077 -5.2777 20 6 7.7019 -7.1606 -5.1023 21 6 8.6223 -7.1326 -6.1316 22 6 8.3298 -7.7391 -7.3394 23 6 7.1176 -8.3799 -7.5189 24 6 6.1949 -8.4154 -6.4918 25 6 5.7035 -7.2958 -3.0079 26 8 6.6719 -6.6812 -2.5977 27 6 4.0040 -4.7812 -1.1841 28 6 2.9684 -3.6564 -1.2558 29 1 -0.4849 0.8401 -0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6245 -2.5571 0.8896 32 1 0.8251 -5.0916 -0.5781 33 1 0.9729 -4.8434 1.1788 34 1 2.0480 -6.9719 0.4570 35 1 3.2351 -5.8355 1.1420 36 1 3.8415 -8.0234 -0.4136 37 1 5.1942 -6.8671 -0.4507 38 1 7.9293 -6.6833 -4.1606 39 1 9.5700 -6.6332 -5.9944 40 1 9.0493 -7.7120 -8.1444 41 1 6.8921 -8.8531 -8.4632 42 1 5.2485 -8.9164 -6.6324 43 1 4.6994 -4.5837 -0.3684 44 1 4.5515 -4.8318 -2.1252 45 1 2.2894 -3.8398 -2.0884 46 1 3.4764 -2.7033 -1.4035 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872735262.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:00 Heat of formation + Delta-G solvation = 142.375037 kcal Electronic energy + Delta-G solvation = -29668.946950 eV Core-core repulsion = 25597.763812 eV Total energy + Delta-G solvation = -4071.183138 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.30941 -39.63847 -39.01278 -38.30361 -36.01887 -34.68867 -33.22633 -32.29417 -31.36169 -30.59173 -30.21085 -28.57386 -26.37602 -24.88319 -24.41127 -23.43266 -23.16040 -22.08806 -21.76948 -21.42398 -19.35001 -18.94208 -17.68345 -17.08676 -16.76026 -16.55630 -16.35475 -15.92806 -15.20322 -14.97339 -14.67064 -14.58197 -14.34410 -14.15209 -13.89417 -13.84595 -13.73680 -13.64416 -13.32936 -13.31359 -13.13650 -12.52088 -12.15105 -12.02764 -11.87432 -11.70064 -11.67548 -11.24312 -10.96595 -10.84781 -10.72594 -10.55090 -10.50589 -10.45933 -9.99973 -9.76743 -9.37193 -9.21445 -8.66891 -8.56233 -8.45200 -7.31287 -6.05401 -4.06917 0.52544 0.69982 0.97601 1.18199 2.08981 2.50324 3.29458 3.36966 3.41446 3.41782 3.50125 3.86013 4.40099 4.42697 4.52865 4.65011 4.76091 4.81030 4.85883 4.86849 4.99635 5.03609 5.19536 5.25969 5.30134 5.38606 5.42712 5.58895 5.64911 5.69700 5.77683 5.79765 5.92208 6.00747 6.04145 6.05874 6.14714 6.32083 6.45592 6.55205 6.60187 6.82897 6.92637 7.25523 7.30573 7.31660 7.46443 7.76248 8.03141 8.14043 8.49856 9.00668 9.57575 11.05484 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013583 B = 0.002428 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.896874 B =11528.024788 C =12788.658830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.508 4.508 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.538 5.538 11 C 0.056 3.944 12 C 0.068 3.932 13 N -0.554 5.554 14 C 0.313 3.687 15 N -0.453 5.453 16 N 0.053 4.947 17 N 0.015 4.985 18 N -0.420 5.420 19 C 0.171 3.829 20 C -0.135 4.135 21 C -0.093 4.093 22 C -0.129 4.129 23 C -0.097 4.097 24 C -0.125 4.125 25 C 0.648 3.352 26 O -0.515 6.515 27 C 0.059 3.941 28 C 0.070 3.930 29 H 0.261 0.739 30 H -0.008 1.008 31 H 0.031 0.969 32 H 0.033 0.967 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.049 0.951 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.154 0.846 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.133 0.867 42 H 0.138 0.862 43 H 0.049 0.951 44 H 0.064 0.936 45 H 0.028 0.972 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.620 -21.111 -10.437 27.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.263 5.263 11 C -0.073 4.073 12 C -0.059 4.059 13 N -0.280 5.280 14 C 0.103 3.897 15 N -0.285 5.285 16 N 0.056 4.944 17 N 0.019 4.981 18 N -0.241 5.241 19 C 0.080 3.920 20 C -0.156 4.156 21 C -0.112 4.112 22 C -0.148 4.148 23 C -0.116 4.116 24 C -0.146 4.146 25 C 0.346 3.654 26 O -0.383 6.383 27 C -0.068 4.068 28 C -0.059 4.059 29 H 0.071 0.929 30 H 0.010 0.990 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.067 0.933 36 H 0.129 0.871 37 H 0.111 0.889 38 H 0.171 0.829 39 H 0.151 0.849 40 H 0.146 0.854 41 H 0.151 0.849 42 H 0.156 0.844 43 H 0.067 0.933 44 H 0.082 0.918 45 H 0.046 0.954 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.178 -21.089 -10.380 26.947 hybrid contribution 0.697 1.378 0.146 1.551 sum 13.875 -19.711 -10.234 26.187 Atomic orbital electron populations 1.69969 1.06060 1.26704 1.50994 1.24993 0.94873 0.99350 0.95409 0.86450 0.80086 0.83420 0.77530 1.19657 1.21093 1.20978 1.21182 0.93478 0.89927 1.50070 0.91881 1.19708 0.89988 0.87208 0.96208 1.62316 1.28207 1.02812 1.32987 1.22078 0.94565 0.89755 1.00932 1.22168 0.95935 0.99533 0.88257 1.61734 1.26041 1.03546 1.36706 1.22092 0.97614 0.95524 0.74459 1.50511 1.13281 1.49978 1.14740 1.79648 1.14800 1.05147 0.94781 1.79752 0.91480 1.11931 1.14979 1.47248 1.14005 1.49859 1.12956 1.17413 0.87754 1.00920 0.85919 1.21431 0.91800 1.00210 1.02158 1.21057 0.99066 0.98634 0.92437 1.21285 0.97338 0.98476 0.97708 1.21021 0.93291 0.98817 0.98458 1.20891 1.01288 1.01151 0.91224 1.16920 0.84918 0.81998 0.81536 1.91089 1.31162 1.43709 1.72350 1.22329 0.96215 0.87934 1.00341 1.21964 0.95280 0.97267 0.91413 0.92949 0.99018 0.95067 0.94887 0.90445 0.90342 0.93308 0.87059 0.88929 0.82889 0.84896 0.85403 0.84932 0.84414 0.93276 0.91802 0.95355 0.89285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.51 -14.21 8.47 -34.44 -0.29 -14.50 16 8 H 0.06 1.75 7.13 -52.49 -0.37 1.38 16 9 C 0.19 5.02 4.72 -4.97 -0.02 4.99 16 10 N -0.54 -11.41 4.70 -235.90 -1.11 -12.51 16 11 C 0.06 0.96 5.61 -3.76 -0.02 0.94 16 12 C 0.07 0.90 5.53 -3.77 -0.02 0.88 16 13 N -0.55 -7.70 4.81 -238.38 -1.15 -8.85 16 14 C 0.31 3.49 6.29 -63.31 -0.40 3.09 16 15 N -0.45 -5.75 3.81 -68.06 -0.26 -6.01 16 16 N 0.05 0.67 13.55 60.35 0.82 1.49 16 17 N 0.02 0.19 12.86 60.35 0.78 0.96 16 18 N -0.42 -5.35 3.80 -14.01 -0.05 -5.41 16 19 C 0.17 1.94 6.69 -83.60 -0.56 1.38 16 20 C -0.13 -1.45 9.40 -39.40 -0.37 -1.82 16 21 C -0.09 -0.76 10.04 -39.61 -0.40 -1.16 16 22 C -0.13 -0.89 10.04 -39.55 -0.40 -1.29 16 23 C -0.10 -0.69 10.04 -39.61 -0.40 -1.09 16 24 C -0.13 -1.13 9.67 -39.40 -0.38 -1.51 16 25 C 0.65 9.02 8.45 -86.42 -0.73 8.29 16 26 O -0.51 -7.95 15.04 5.09 0.08 -7.87 16 27 C 0.06 0.96 5.47 -3.76 -0.02 0.94 16 28 C 0.07 1.38 5.43 -3.76 -0.02 1.36 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H -0.01 -0.22 8.12 -51.93 -0.42 -0.65 16 31 H 0.03 0.86 8.02 -51.93 -0.42 0.44 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 34 H 0.08 0.82 7.98 -51.93 -0.41 0.40 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.11 0.92 7.75 -51.93 -0.40 0.51 16 37 H 0.09 0.99 7.65 -51.93 -0.40 0.60 16 38 H 0.15 1.87 5.53 -52.49 -0.29 1.58 16 39 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 40 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 41 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.14 1.12 7.71 -52.48 -0.40 0.71 16 43 H 0.05 0.80 8.12 -51.93 -0.42 0.37 16 44 H 0.06 1.06 7.94 -51.93 -0.41 0.64 16 45 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.09 1.91 6.79 -51.93 -0.35 1.56 16 LS Contribution 381.75 15.07 5.75 5.75 Total: -1.00 -32.04 381.75 -9.96 -42.00 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -6.40 Total: -2.26 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -4.13 Total: 1.98 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -0.24 Total: -56.26 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: 0.08 Total: -7.87 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.04 -9.96 -42.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872735262.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.375 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds