Wall clock time and date at job start Wed Apr 1 2020 04:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86792 * 120.00348 * 2 1 4 4 H 1.48505 * 109.47069 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47368 * 299.99964 * 3 2 1 6 6 H 1.48504 * 109.47185 * 60.00333 * 3 2 1 7 7 C 1.37883 * 119.99570 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99899 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99891 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.46724 * 180.02562 * 9 7 2 11 11 C 1.46964 * 110.99879 * 170.00032 * 10 9 7 12 12 C 1.53051 * 109.36421 * 183.18591 * 11 10 9 13 13 N 1.46948 * 109.36852 * 301.60323 * 12 11 10 14 14 C 1.46899 * 111.00241 * 183.18639 * 13 12 11 15 15 N 1.46505 * 109.47375 * 154.99541 * 14 13 12 16 16 N 1.40014 * 126.26227 * 284.69674 * 15 14 13 17 17 N 1.23648 * 109.31977 * 180.26109 * 16 15 14 18 18 N 1.40022 * 109.31474 * 359.97438 * 17 16 15 19 19 C 1.40134 * 126.25769 * 179.97438 * 18 17 16 20 20 C 1.38859 * 120.06619 * 179.75053 * 19 18 17 21 21 C 1.38114 * 119.92899 * 179.76847 * 20 19 18 22 22 C 1.38284 * 120.06978 * 0.50107 * 21 20 19 23 23 C 1.38283 * 120.13838 * 359.74753 * 22 21 20 24 24 C 1.38118 * 120.06505 * 0.02562 * 23 22 21 25 25 C 1.35048 * 107.48188 * 0.02562 * 18 17 16 26 26 O 1.21810 * 126.80069 * 179.97438 * 25 18 17 27 27 C 1.46958 * 110.88282 * 59.32041 * 13 12 11 28 28 C 1.46953 * 111.00216 * 293.79933 * 10 9 7 29 29 H 0.97004 * 119.99519 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.46907 * 60.00902 * 9 7 2 31 31 H 1.08994 * 109.47223 * 300.00114 * 9 7 2 32 32 H 1.09005 * 109.48490 * 63.22574 * 11 10 9 33 33 H 1.09002 * 109.48890 * 303.15942 * 11 10 9 34 34 H 1.09001 * 109.48767 * 181.63255 * 12 11 10 35 35 H 1.09001 * 109.48349 * 61.57027 * 12 11 10 36 36 H 1.09003 * 109.46688 * 35.00356 * 14 13 12 37 37 H 1.08992 * 109.47389 * 275.00249 * 14 13 12 38 38 H 1.07998 * 120.03499 * 0.02562 * 20 19 18 39 39 H 1.08000 * 119.96585 * 180.27146 * 21 20 19 40 40 H 1.08002 * 119.93500 * 179.72297 * 22 21 20 41 41 H 1.07996 * 119.96998 * 180.02562 * 23 22 21 42 42 H 1.08005 * 120.03527 * 180.02562 * 24 23 22 43 43 H 1.08992 * 109.49042 * 60.64268 * 27 13 12 44 44 H 1.08994 * 109.49083 * 180.71811 * 27 13 12 45 45 H 1.08992 * 109.49140 * 296.78052 * 28 10 9 46 46 H 1.09001 * 109.48774 * 56.84659 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3461 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 7 2.2054 -3.6158 -0.0005 11 6 1.5206 -4.8941 0.2377 12 6 2.5560 -6.0189 0.3093 13 7 3.3191 -6.0594 -0.9459 14 6 4.2737 -7.1760 -0.9459 15 7 4.5690 -7.5661 -2.3268 16 7 3.7291 -8.2921 -3.1800 17 7 4.2911 -8.4502 -4.2700 18 7 5.5518 -7.8421 -4.2336 19 6 6.4859 -7.8077 -5.2777 20 6 7.7019 -7.1606 -5.1023 21 6 8.6223 -7.1326 -6.1316 22 6 8.3298 -7.7391 -7.3394 23 6 7.1176 -8.3799 -7.5189 24 6 6.1949 -8.4154 -6.4918 25 6 5.7035 -7.2958 -3.0079 26 8 6.6719 -6.6812 -2.5977 27 6 4.0040 -4.7812 -1.1841 28 6 2.9684 -3.6564 -1.2558 29 1 -0.4849 0.8401 -0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6245 -2.5571 0.8896 32 1 0.8251 -5.0916 -0.5781 33 1 0.9729 -4.8434 1.1788 34 1 2.0480 -6.9719 0.4570 35 1 3.2351 -5.8355 1.1420 36 1 3.8415 -8.0234 -0.4136 37 1 5.1942 -6.8671 -0.4507 38 1 7.9293 -6.6833 -4.1606 39 1 9.5700 -6.6332 -5.9944 40 1 9.0493 -7.7120 -8.1444 41 1 6.8921 -8.8531 -8.4632 42 1 5.2485 -8.9164 -6.6324 43 1 4.6994 -4.5837 -0.3684 44 1 4.5515 -4.8318 -2.1252 45 1 2.2894 -3.8398 -2.0884 46 1 3.4764 -2.7033 -1.4035 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872735262.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:59 Heat of formation + Delta-G solvation = 119.963655 kcal Electronic energy + Delta-G solvation = -29669.918780 eV Core-core repulsion = 25597.763812 eV Total energy + Delta-G solvation = -4072.154968 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.27291 -40.43591 -40.23587 -39.35188 -37.29996 -35.81750 -34.74045 -33.89916 -32.01232 -31.96884 -31.01508 -30.13437 -27.91612 -25.99253 -25.60087 -24.67354 -24.22223 -23.33446 -22.89281 -22.53450 -20.78042 -19.75763 -18.70719 -18.51526 -18.04553 -17.62872 -17.39931 -17.20824 -16.51064 -16.23514 -15.90462 -15.78412 -15.54292 -15.28175 -15.16701 -14.94020 -14.90838 -14.59588 -14.45215 -14.31100 -14.18902 -13.99389 -13.62387 -13.41542 -13.01722 -12.82371 -12.73188 -12.53988 -12.46739 -12.33948 -12.31847 -12.22199 -12.02371 -11.67382 -11.47800 -11.26229 -10.94016 -10.65645 -10.02070 -9.68230 -9.42484 -9.10849 -8.24304 -6.34409 -0.30734 -0.22307 0.31262 0.33335 1.12746 1.38140 1.38506 1.52171 1.58183 2.37095 2.51525 2.76078 2.83961 3.07762 3.21797 3.54766 3.77717 3.86446 3.94809 3.97904 4.07893 4.08846 4.20390 4.25241 4.28006 4.37261 4.42166 4.43253 4.53176 4.58997 4.62264 4.76301 4.88476 4.93315 4.98199 5.04167 5.10372 5.15872 5.23182 5.31596 5.42421 5.52105 5.58772 5.69453 5.79745 5.92510 6.00821 6.23914 6.31175 6.49811 6.57055 6.81142 7.35347 8.87064 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013583 B = 0.002428 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.896874 B =11528.024788 C =12788.658830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.061 0.939 9 C 0.209 3.791 10 N -0.541 5.541 11 C 0.051 3.949 12 C 0.079 3.921 13 N -0.564 5.564 14 C 0.311 3.689 15 N -0.451 5.451 16 N 0.048 4.952 17 N 0.019 4.981 18 N -0.419 5.419 19 C 0.137 3.863 20 C -0.155 4.155 21 C -0.096 4.096 22 C -0.120 4.120 23 C -0.092 4.092 24 C -0.130 4.130 25 C 0.639 3.361 26 O -0.538 6.538 27 C 0.078 3.922 28 C 0.075 3.925 29 H 0.265 0.735 30 H -0.042 1.042 31 H 0.011 0.989 32 H 0.020 0.980 33 H 0.083 0.917 34 H 0.119 0.881 35 H 0.060 0.940 36 H 0.151 0.849 37 H 0.101 0.899 38 H 0.132 0.868 39 H 0.153 0.847 40 H 0.161 0.839 41 H 0.165 0.835 42 H 0.144 0.856 43 H 0.052 0.948 44 H 0.058 0.942 45 H 0.009 0.991 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.367 -22.585 -11.331 29.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.079 0.921 9 C 0.083 3.917 10 N -0.266 5.266 11 C -0.078 4.078 12 C -0.048 4.048 13 N -0.290 5.290 14 C 0.102 3.898 15 N -0.283 5.283 16 N 0.052 4.948 17 N 0.022 4.978 18 N -0.239 5.239 19 C 0.047 3.953 20 C -0.176 4.176 21 C -0.115 4.115 22 C -0.139 4.139 23 C -0.110 4.110 24 C -0.151 4.151 25 C 0.337 3.663 26 O -0.409 6.409 27 C -0.050 4.050 28 C -0.054 4.054 29 H 0.074 0.926 30 H -0.025 1.025 31 H 0.029 0.971 32 H 0.038 0.962 33 H 0.101 0.899 34 H 0.137 0.863 35 H 0.078 0.922 36 H 0.168 0.832 37 H 0.118 0.882 38 H 0.150 0.850 39 H 0.170 0.830 40 H 0.179 0.821 41 H 0.182 0.818 42 H 0.162 0.838 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.027 0.973 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.929 -22.605 -11.284 29.346 hybrid contribution 0.162 1.765 0.313 1.800 sum 15.091 -20.840 -10.971 27.972 Atomic orbital electron populations 1.70089 1.07677 1.27886 1.51710 1.25911 0.95768 1.03192 0.94776 0.85345 0.78909 0.78622 0.77821 1.18870 1.20482 1.20087 1.21471 0.93509 0.91143 1.50100 0.92109 1.19350 0.90014 0.88857 0.93499 1.62241 1.27374 1.03498 1.33479 1.22238 0.95765 0.89149 1.00615 1.22149 0.95095 0.99447 0.88123 1.61652 1.26816 1.03081 1.37494 1.22398 0.97664 0.95599 0.74117 1.50646 1.12910 1.49634 1.15121 1.79632 1.14790 1.05479 0.94938 1.79708 0.91409 1.11752 1.14925 1.47411 1.14128 1.49384 1.12988 1.17789 0.88035 1.02908 0.86580 1.21414 0.92660 1.01179 1.02331 1.21354 0.99238 0.98582 0.92296 1.21704 0.97726 0.96679 0.97763 1.21448 0.92691 0.97958 0.98941 1.21108 1.02134 1.00927 0.90891 1.17091 0.85078 0.82112 0.82033 1.91066 1.32027 1.44843 1.72922 1.21997 0.94738 0.88035 1.00256 1.21859 0.95431 0.97940 0.90181 0.92621 1.02469 0.97139 0.96174 0.89870 0.86253 0.92156 0.83163 0.88170 0.85040 0.82982 0.82118 0.81768 0.83847 0.92953 0.92345 0.97279 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 2 C 0.00 0.09 5.46 84.66 0.46 0.56 16 3 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 4 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 7 C -0.52 -30.22 8.47 25.60 0.22 -30.00 16 8 H 0.06 3.46 7.13 -2.91 -0.02 3.44 16 9 C 0.21 11.35 4.72 85.56 0.40 11.75 16 10 N -0.54 -23.58 4.70 -900.26 -4.23 -27.81 16 11 C 0.05 1.74 5.61 86.31 0.48 2.22 16 12 C 0.08 1.88 5.53 86.31 0.48 2.36 16 13 N -0.56 -14.83 4.81 -908.09 -4.37 -19.20 16 14 C 0.31 6.24 6.29 170.80 1.07 7.31 16 15 N -0.45 -11.02 3.81 -487.25 -1.86 -12.88 16 16 N 0.05 1.17 13.55 37.02 0.50 1.67 16 17 N 0.02 0.45 12.86 37.02 0.48 0.92 16 18 N -0.42 -10.73 3.80 -316.24 -1.20 -11.93 16 19 C 0.14 3.11 6.69 38.11 0.25 3.37 16 20 C -0.15 -3.38 9.40 22.39 0.21 -3.17 16 21 C -0.10 -1.43 10.04 22.25 0.22 -1.21 16 22 C -0.12 -1.29 10.04 22.29 0.22 -1.07 16 23 C -0.09 -1.05 10.04 22.25 0.22 -0.82 16 24 C -0.13 -2.20 9.67 22.39 0.22 -1.99 16 25 C 0.64 17.88 8.45 178.88 1.51 19.39 16 26 O -0.54 -17.04 15.04 -4.70 -0.07 -17.11 16 27 C 0.08 2.52 5.47 86.31 0.47 2.99 16 28 C 0.07 3.08 5.43 86.31 0.47 3.55 16 29 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 30 H -0.04 -2.54 8.12 -2.39 -0.02 -2.56 16 31 H 0.01 0.61 8.02 -2.39 -0.02 0.59 16 32 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.08 2.73 8.07 -2.39 -0.02 2.71 16 34 H 0.12 1.98 7.98 -2.39 -0.02 1.96 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.15 1.87 7.75 -2.39 -0.02 1.85 16 37 H 0.10 1.93 7.65 -2.39 -0.02 1.91 16 38 H 0.13 3.41 5.53 -2.91 -0.02 3.40 16 39 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 40 H 0.16 0.69 8.06 -2.91 -0.02 0.66 16 41 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 42 H 0.14 2.16 7.71 -2.91 -0.02 2.14 16 43 H 0.05 1.67 8.12 -2.39 -0.02 1.65 16 44 H 0.06 1.96 7.94 -2.39 -0.02 1.94 16 45 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.06 2.95 6.79 -2.39 -0.02 2.93 16 Total: -1.00 -73.14 381.75 -0.52 -73.67 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 0.99 Total: 6.93 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 6.92 Total: 15.25 kcal Atomic # 7 Polarization: -115.35 SS G_CDS: -10.40 Total: -125.74 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.07 Total: -17.11 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -73.14 -0.52 -73.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872735262.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.629 kcal (2) G-P(sol) polarization free energy of solvation -73.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds