Wall clock time and date at job start Wed Apr 1 2020 03:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46852 * 2 1 4 4 C 1.50700 * 109.46902 * 119.99822 * 2 1 3 5 5 N 1.30505 * 125.65097 * 300.04225 * 4 2 1 6 6 C 1.34121 * 109.25807 * 179.97438 * 5 4 2 7 7 C 1.34679 * 108.01940 * 359.72955 * 6 5 4 8 8 N 1.35041 * 125.65197 * 120.00359 * 4 2 1 9 9 C 1.46505 * 126.39161 * 0.03664 * 8 4 2 10 10 C 1.52998 * 109.47424 * 85.00255 * 9 8 4 11 11 N 1.46497 * 109.47544 * 179.97438 * 10 9 8 12 12 S 1.65595 * 120.00498 * 164.99742 * 11 10 9 13 13 O 1.42105 * 106.40138 * 311.46357 * 12 11 10 14 14 O 1.42096 * 106.40496 * 178.53663 * 12 11 10 15 15 N 1.65600 * 107.21701 * 64.99908 * 12 11 10 16 16 C 1.46507 * 119.99961 * 270.00026 * 15 12 11 17 17 C 1.46495 * 120.00190 * 90.00283 * 15 12 11 18 18 H 1.09000 * 109.47378 * 359.97438 * 17 15 12 19 19 C 1.53009 * 109.47194 * 240.00150 * 17 15 12 20 20 C 1.50702 * 109.47571 * 120.00081 * 17 15 12 21 21 H 1.08002 * 119.99446 * 359.97438 * 20 17 15 22 22 C 1.37871 * 120.00072 * 180.02562 * 20 17 15 23 23 N 1.31516 * 119.99826 * 179.72119 * 22 20 17 24 24 Si 1.86800 * 120.00406 * 359.97438 * 22 20 17 25 25 H 1.48501 * 109.46758 * 269.72576 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72423 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72459 * 24 22 20 28 28 H 1.08997 * 109.47559 * 300.00189 * 1 2 3 29 29 H 1.09003 * 109.47148 * 60.00471 * 1 2 3 30 30 H 1.09007 * 109.46972 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47559 * 239.99811 * 2 1 3 32 32 H 1.09002 * 109.46766 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47176 * 299.99894 * 3 2 1 34 34 H 1.09005 * 109.47226 * 59.99918 * 3 2 1 35 35 H 1.07997 * 125.99272 * 180.02562 * 6 5 4 36 36 H 1.07996 * 126.59377 * 180.27595 * 7 6 5 37 37 H 1.08995 * 109.47363 * 324.99642 * 9 8 4 38 38 H 1.09006 * 109.46832 * 204.99746 * 9 8 4 39 39 H 1.09004 * 109.47210 * 59.99120 * 10 9 8 40 40 H 1.09006 * 109.46700 * 299.99571 * 10 9 8 41 41 H 0.96997 * 119.99355 * 344.99579 * 11 10 9 42 42 H 1.08993 * 109.47215 * 269.99820 * 16 15 12 43 43 H 1.09001 * 109.46606 * 30.00425 * 16 15 12 44 44 H 1.09004 * 109.46774 * 150.00149 * 16 15 12 45 45 H 1.08994 * 109.46846 * 179.97438 * 19 17 15 46 46 H 1.09001 * 109.46592 * 299.99497 * 19 17 15 47 47 H 1.08990 * 109.47127 * 59.99623 * 19 17 15 48 48 H 0.96999 * 120.00128 * 180.27192 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7853 -0.3624 2.4638 6 6 2.3923 -1.2214 3.2959 7 6 3.0353 -2.1401 2.5499 8 7 2.8120 -1.8129 1.2397 9 6 3.3191 -2.5287 0.0663 10 6 4.6109 -1.8660 -0.4165 11 7 5.1183 -2.5821 -1.5894 12 16 6.2787 -1.8880 -2.5454 13 8 5.8352 -0.5659 -2.8188 14 8 6.5784 -2.8333 -3.5631 15 7 7.6480 -1.7410 -1.6258 16 6 7.8765 -0.5251 -0.8412 17 6 8.6309 -2.8269 -1.5969 18 1 8.2914 -3.6415 -2.2366 19 6 8.7861 -3.3363 -0.1624 20 6 9.9585 -2.3163 -2.0949 21 1 10.0597 -1.2860 -2.4026 22 6 11.0434 -3.1646 -2.1586 23 7 12.2005 -2.7204 -2.5984 24 14 10.8682 -4.9468 -1.6270 25 1 11.1826 -5.0650 -0.1805 26 1 9.4753 -5.4010 -1.8695 27 1 11.8072 -5.7911 -2.4083 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 2.3659 -1.1858 4.3749 36 1 3.6172 -2.9733 2.9152 37 1 2.5747 -2.4959 -0.7291 38 1 3.5207 -3.5663 0.3328 39 1 5.3553 -1.8988 0.3790 40 1 4.4093 -0.8284 -0.6829 41 1 4.7746 -3.4629 -1.8060 42 1 8.4237 0.1992 -1.4445 43 1 6.9182 -0.0997 -0.5431 44 1 8.4575 -0.7702 0.0479 45 1 9.5171 -4.1445 -0.1410 46 1 9.1255 -2.5219 0.4776 47 1 7.8260 -3.7056 0.1978 48 1 12.9628 -3.3182 -2.6470 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921526486.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:18 Heat of formation + Delta-G solvation = -11.817123 kcal Electronic energy + Delta-G solvation = -29503.092914 eV Core-core repulsion = 25528.374703 eV Total energy + Delta-G solvation = -3974.718212 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.38982 -37.02510 -36.64839 -36.38401 -35.58568 -35.47689 -33.51445 -32.57658 -30.14068 -29.14420 -28.35012 -27.37224 -25.92784 -25.09109 -23.81732 -22.94510 -21.47619 -21.05210 -19.56272 -18.93786 -17.71106 -17.35892 -17.13348 -16.74805 -16.15105 -15.73443 -15.49416 -15.04947 -14.73169 -14.56003 -14.51356 -13.84405 -13.72380 -13.58506 -13.44549 -13.31520 -12.91419 -12.74830 -12.41626 -12.34251 -12.32224 -12.24977 -12.04074 -11.79950 -11.73931 -11.69761 -11.59843 -11.43066 -11.29730 -11.18342 -11.17491 -10.57144 -10.24286 -10.12935 -9.90566 -9.75382 -9.60771 -9.48751 -8.70468 -8.56129 -8.24244 -6.18609 -4.19775 0.87831 1.81222 2.41366 2.97295 3.15883 3.23966 3.27889 3.30742 3.83951 4.09591 4.20783 4.26963 4.28140 4.44763 4.72756 4.74683 4.79545 4.87916 5.00518 5.09421 5.11794 5.19070 5.29678 5.38752 5.44649 5.46499 5.59174 5.62447 5.64700 5.73303 5.90205 5.96511 6.05185 6.08245 6.13131 6.14176 6.21431 6.37153 6.47408 6.57179 6.68809 6.78227 6.93434 7.18616 7.29142 7.54654 7.92279 8.40221 8.85646 9.40649 10.94391 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.017508 B = 0.003099 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.912748 B = 9031.787439 C = 9665.787019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.013 4.013 3 C -0.141 4.141 4 C 0.216 3.784 5 N -0.486 5.486 6 C -0.028 4.028 7 C -0.057 4.057 8 N -0.454 5.454 9 C 0.097 3.903 10 C 0.107 3.893 11 N -1.133 6.133 12 S 2.781 3.219 13 O -0.985 6.985 14 O -0.969 6.969 15 N -0.982 5.982 16 C 0.107 3.893 17 C 0.240 3.760 18 H 0.057 0.943 19 C -0.162 4.162 20 C -0.524 4.524 21 H 0.083 0.917 22 C 0.074 3.926 23 N -0.893 5.893 24 Si 0.882 3.118 25 H -0.277 1.277 26 H -0.265 1.265 27 H -0.293 1.293 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.169 0.831 36 H 0.174 0.826 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.414 0.586 42 H 0.057 0.943 43 H 0.049 0.951 44 H 0.073 0.927 45 H 0.050 0.950 46 H 0.060 0.940 47 H 0.031 0.969 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.148 0.597 9.002 22.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.033 4.033 3 C -0.199 4.199 4 C -0.046 4.046 5 N -0.204 5.204 6 C -0.176 4.176 7 C -0.189 4.189 8 N -0.138 5.138 9 C -0.027 4.027 10 C -0.021 4.021 11 N -0.892 5.892 12 S 2.789 3.211 13 O -0.968 6.968 14 O -0.953 6.953 15 N -0.825 5.825 16 C -0.039 4.039 17 C 0.135 3.865 18 H 0.075 0.925 19 C -0.221 4.221 20 C -0.563 4.563 21 H 0.101 0.899 22 C -0.129 4.129 23 N -0.530 5.530 24 Si 0.712 3.288 25 H -0.204 1.204 26 H -0.190 1.190 27 H -0.220 1.220 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.186 0.814 36 H 0.191 0.809 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.247 0.753 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.092 0.908 45 H 0.068 0.932 46 H 0.079 0.921 47 H 0.050 0.950 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.409 1.611 8.228 22.992 hybrid contribution 0.737 -2.398 0.566 2.572 sum -20.672 -0.787 8.794 22.479 Atomic orbital electron populations 1.21775 0.93053 1.02003 1.02830 1.19624 0.96683 0.96166 0.90865 1.21792 1.01437 0.93899 1.02771 1.23295 0.96802 0.88772 0.95745 1.70194 1.23905 1.27315 0.98961 1.22288 1.01312 0.94409 0.99608 1.22744 1.08560 1.04943 0.82699 1.45317 1.38758 1.23142 1.06543 1.22040 0.96565 0.96956 0.87159 1.21488 0.95202 0.96813 0.88610 1.56257 1.59035 1.31538 1.42388 1.01989 0.72411 0.73340 0.73325 1.93567 1.81588 1.38209 1.83473 1.93629 1.83670 1.63682 1.54280 1.57422 1.35192 1.25525 1.64313 1.21232 1.00106 0.86037 0.96504 1.19096 0.89163 0.85055 0.93146 0.92530 1.22498 0.98938 1.00723 0.99966 1.21143 0.91721 0.99653 1.43828 0.89943 1.24909 0.95075 0.98273 0.94621 1.69870 1.01091 1.36049 1.45997 0.86949 0.78302 0.85503 0.78035 1.20390 1.18993 1.22010 0.91329 0.91738 0.92925 0.89936 0.92378 0.91636 0.91371 0.81383 0.80860 0.88188 0.88001 0.90783 0.89714 0.75343 0.92478 0.93254 0.90790 0.93171 0.92121 0.95010 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.17 37.16 0.34 -0.74 16 2 C -0.01 -0.12 3.25 -91.77 -0.30 -0.42 16 3 C -0.14 -1.27 9.18 37.16 0.34 -0.93 16 4 C 0.22 2.32 6.41 -155.41 -1.00 1.33 16 5 N -0.49 -5.95 11.25 -10.82 -0.12 -6.07 16 6 C -0.03 -0.30 11.87 -17.81 -0.21 -0.51 16 7 C -0.06 -0.52 11.58 -16.56 -0.19 -0.71 16 8 N -0.45 -4.27 2.75 -113.90 -0.31 -4.59 16 9 C 0.10 0.73 5.83 -4.04 -0.02 0.70 16 10 C 0.11 1.04 6.57 -4.04 -0.03 1.02 16 11 N -1.13 -13.00 6.05 -10.61 -0.06 -13.06 16 12 S 2.78 48.11 6.09 -107.50 -0.66 47.46 16 13 O -0.99 -18.49 16.68 -57.17 -0.95 -19.44 16 14 O -0.97 -20.32 16.70 -57.17 -0.95 -21.27 16 15 N -0.98 -18.46 3.12 -115.85 -0.36 -18.82 16 16 C 0.11 1.77 9.53 59.85 0.57 2.34 16 17 C 0.24 5.31 2.21 -69.08 -0.15 5.15 16 18 H 0.06 1.32 5.97 -51.93 -0.31 1.01 16 19 C -0.16 -3.12 8.65 37.16 0.32 -2.80 16 20 C -0.52 -14.09 8.95 -34.44 -0.31 -14.40 16 21 H 0.08 2.42 7.89 -52.49 -0.41 2.00 16 22 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 23 N -0.89 -26.48 13.96 55.43 0.77 -25.71 16 24 Si 0.88 20.85 24.37 -169.99 -4.14 16.71 16 25 H -0.28 -6.23 6.88 56.52 0.39 -5.84 16 26 H -0.26 -5.95 6.52 56.52 0.37 -5.58 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.67 6.85 -51.93 -0.36 0.31 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.17 1.37 8.06 -52.49 -0.42 0.94 16 36 H 0.17 1.12 8.06 -52.49 -0.42 0.69 16 37 H 0.10 0.62 7.28 -51.93 -0.38 0.25 16 38 H 0.10 0.58 8.13 -51.93 -0.42 0.16 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.90 7.75 -51.93 -0.40 0.50 16 41 H 0.41 3.72 8.65 -34.47 -0.30 3.42 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.05 0.66 7.79 -51.93 -0.40 0.26 16 44 H 0.07 1.16 6.43 -51.93 -0.33 0.83 16 45 H 0.05 1.03 3.28 -51.93 -0.17 0.86 16 46 H 0.06 1.11 6.66 -51.93 -0.35 0.77 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 394.53 15.07 5.95 5.95 Total: -1.00 -35.03 394.53 -9.25 -44.28 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -7.67 Total: 2.57 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -0.73 Total: -8.00 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: -0.09 Total: -68.25 kcal Atomic # 8 Polarization: -38.80 SS G_CDS: -1.91 Total: -40.71 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.14 Total: 16.71 kcal Atomic # 16 Polarization: 48.11 SS G_CDS: -0.66 Total: 47.46 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.03 -9.25 -44.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921526486.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.464 kcal (2) G-P(sol) polarization free energy of solvation -35.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds