Wall clock time and date at job start Wed Apr 1 2020 03:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46852 * 2 1 4 4 C 1.50700 * 109.46902 * 119.99822 * 2 1 3 5 5 N 1.30505 * 125.65097 * 300.04225 * 4 2 1 6 6 C 1.34121 * 109.25807 * 179.97438 * 5 4 2 7 7 C 1.34679 * 108.01940 * 359.72955 * 6 5 4 8 8 N 1.35041 * 125.65197 * 120.00359 * 4 2 1 9 9 C 1.46505 * 126.39161 * 0.03664 * 8 4 2 10 10 C 1.52998 * 109.47424 * 85.00255 * 9 8 4 11 11 N 1.46497 * 109.47544 * 179.97438 * 10 9 8 12 12 S 1.65595 * 120.00498 * 164.99742 * 11 10 9 13 13 O 1.42105 * 106.40138 * 311.46357 * 12 11 10 14 14 O 1.42096 * 106.40496 * 178.53663 * 12 11 10 15 15 N 1.65600 * 107.21701 * 64.99908 * 12 11 10 16 16 C 1.46507 * 119.99961 * 270.00026 * 15 12 11 17 17 C 1.46495 * 120.00190 * 90.00283 * 15 12 11 18 18 H 1.09000 * 109.47378 * 359.97438 * 17 15 12 19 19 C 1.53009 * 109.47194 * 240.00150 * 17 15 12 20 20 C 1.50702 * 109.47571 * 120.00081 * 17 15 12 21 21 H 1.08002 * 119.99446 * 359.97438 * 20 17 15 22 22 C 1.37871 * 120.00072 * 180.02562 * 20 17 15 23 23 N 1.31516 * 119.99826 * 179.72119 * 22 20 17 24 24 Si 1.86800 * 120.00406 * 359.97438 * 22 20 17 25 25 H 1.48501 * 109.46758 * 269.72576 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72423 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72459 * 24 22 20 28 28 H 1.08997 * 109.47559 * 300.00189 * 1 2 3 29 29 H 1.09003 * 109.47148 * 60.00471 * 1 2 3 30 30 H 1.09007 * 109.46972 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47559 * 239.99811 * 2 1 3 32 32 H 1.09002 * 109.46766 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47176 * 299.99894 * 3 2 1 34 34 H 1.09005 * 109.47226 * 59.99918 * 3 2 1 35 35 H 1.07997 * 125.99272 * 180.02562 * 6 5 4 36 36 H 1.07996 * 126.59377 * 180.27595 * 7 6 5 37 37 H 1.08995 * 109.47363 * 324.99642 * 9 8 4 38 38 H 1.09006 * 109.46832 * 204.99746 * 9 8 4 39 39 H 1.09004 * 109.47210 * 59.99120 * 10 9 8 40 40 H 1.09006 * 109.46700 * 299.99571 * 10 9 8 41 41 H 0.96997 * 119.99355 * 344.99579 * 11 10 9 42 42 H 1.08993 * 109.47215 * 269.99820 * 16 15 12 43 43 H 1.09001 * 109.46606 * 30.00425 * 16 15 12 44 44 H 1.09004 * 109.46774 * 150.00149 * 16 15 12 45 45 H 1.08994 * 109.46846 * 179.97438 * 19 17 15 46 46 H 1.09001 * 109.46592 * 299.99497 * 19 17 15 47 47 H 1.08990 * 109.47127 * 59.99623 * 19 17 15 48 48 H 0.96999 * 120.00128 * 180.27192 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7853 -0.3624 2.4638 6 6 2.3923 -1.2214 3.2959 7 6 3.0353 -2.1401 2.5499 8 7 2.8120 -1.8129 1.2397 9 6 3.3191 -2.5287 0.0663 10 6 4.6109 -1.8660 -0.4165 11 7 5.1183 -2.5821 -1.5894 12 16 6.2787 -1.8880 -2.5454 13 8 5.8352 -0.5659 -2.8188 14 8 6.5784 -2.8333 -3.5631 15 7 7.6480 -1.7410 -1.6258 16 6 7.8765 -0.5251 -0.8412 17 6 8.6309 -2.8269 -1.5969 18 1 8.2914 -3.6415 -2.2366 19 6 8.7861 -3.3363 -0.1624 20 6 9.9585 -2.3163 -2.0949 21 1 10.0597 -1.2860 -2.4026 22 6 11.0434 -3.1646 -2.1586 23 7 12.2005 -2.7204 -2.5984 24 14 10.8682 -4.9468 -1.6270 25 1 11.1826 -5.0650 -0.1805 26 1 9.4753 -5.4010 -1.8695 27 1 11.8072 -5.7911 -2.4083 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 2.3659 -1.1858 4.3749 36 1 3.6172 -2.9733 2.9152 37 1 2.5747 -2.4959 -0.7291 38 1 3.5207 -3.5663 0.3328 39 1 5.3553 -1.8988 0.3790 40 1 4.4093 -0.8284 -0.6829 41 1 4.7746 -3.4629 -1.8060 42 1 8.4237 0.1992 -1.4445 43 1 6.9182 -0.0997 -0.5431 44 1 8.4575 -0.7702 0.0479 45 1 9.5171 -4.1445 -0.1410 46 1 9.1255 -2.5219 0.4776 47 1 7.8260 -3.7056 0.1978 48 1 12.9628 -3.3182 -2.6470 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921526486.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:17 Heat of formation + Delta-G solvation = -38.337796 kcal Electronic energy + Delta-G solvation = -29504.242937 eV Core-core repulsion = 25528.374703 eV Total energy + Delta-G solvation = -3975.868234 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.08379 -38.46252 -38.13866 -37.36379 -36.96676 -36.24318 -34.55434 -34.32938 -31.81722 -29.85695 -29.10541 -28.02465 -27.37925 -26.97241 -24.56961 -23.63102 -22.73879 -22.12944 -20.59129 -19.91570 -19.02623 -18.92901 -18.28007 -17.96783 -17.48919 -17.00856 -16.34894 -16.26985 -15.78004 -15.46228 -15.26036 -15.19156 -15.02618 -14.57950 -14.48788 -14.32530 -14.16375 -13.98245 -13.86637 -13.57892 -13.48310 -13.28314 -13.18280 -13.07697 -12.96221 -12.94965 -12.85198 -12.73944 -12.37651 -12.17606 -12.09860 -12.00778 -11.84272 -11.46119 -11.33501 -10.87997 -10.78621 -10.70609 -10.54037 -9.81570 -9.25721 -8.30147 -6.35948 -0.47685 1.11319 1.30555 1.39391 1.47803 1.66369 2.05786 2.23445 2.31874 2.56817 3.04740 3.30618 3.44762 3.59809 3.69003 3.79920 3.89498 4.15531 4.20038 4.22207 4.33785 4.36938 4.43826 4.46968 4.58924 4.66338 4.68596 4.75094 4.79551 4.80044 4.83337 4.90611 4.93830 4.96803 5.08950 5.09878 5.19616 5.31758 5.35593 5.46630 5.47363 5.58787 5.77330 5.90530 6.04624 6.25955 6.33284 6.69284 7.21048 7.28987 8.86794 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.017508 B = 0.003099 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.912748 B = 9031.787439 C = 9665.787019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.016 4.016 3 C -0.139 4.139 4 C 0.202 3.798 5 N -0.520 5.520 6 C -0.056 4.056 7 C -0.049 4.049 8 N -0.454 5.454 9 C 0.099 3.901 10 C 0.102 3.898 11 N -1.109 6.109 12 S 2.799 3.201 13 O -1.004 7.004 14 O -1.009 7.009 15 N -0.991 5.991 16 C 0.103 3.897 17 C 0.242 3.758 18 H 0.049 0.951 19 C -0.158 4.158 20 C -0.529 4.529 21 H 0.038 0.962 22 C 0.013 3.987 23 N -0.947 5.947 24 Si 0.943 3.057 25 H -0.254 1.254 26 H -0.242 1.242 27 H -0.301 1.301 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.094 0.906 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.181 0.819 36 H 0.204 0.796 37 H 0.115 0.885 38 H 0.130 0.870 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.430 0.570 42 H 0.032 0.968 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.041 0.959 46 H 0.065 0.935 47 H 0.075 0.925 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.295 -1.613 10.603 25.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.036 4.036 3 C -0.197 4.197 4 C -0.060 4.060 5 N -0.238 5.238 6 C -0.203 4.203 7 C -0.181 4.181 8 N -0.137 5.137 9 C -0.025 4.025 10 C -0.025 4.025 11 N -0.874 5.874 12 S 2.807 3.193 13 O -0.987 6.987 14 O -0.993 6.993 15 N -0.832 5.832 16 C -0.042 4.042 17 C 0.136 3.864 18 H 0.066 0.934 19 C -0.216 4.216 20 C -0.569 4.569 21 H 0.056 0.944 22 C -0.185 4.185 23 N -0.587 5.587 24 Si 0.769 3.231 25 H -0.179 1.179 26 H -0.166 1.166 27 H -0.229 1.229 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.198 0.802 36 H 0.221 0.779 37 H 0.133 0.867 38 H 0.148 0.852 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.267 0.733 42 H 0.051 0.949 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.059 0.941 46 H 0.084 0.916 47 H 0.094 0.906 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -23.583 -0.590 9.840 25.560 hybrid contribution 1.336 -1.562 0.052 2.056 sum -22.247 -2.152 9.891 24.442 Atomic orbital electron populations 1.21726 0.92343 1.02152 1.02885 1.19721 0.97294 0.95795 0.90766 1.21764 1.00592 0.94421 1.02891 1.23554 0.97268 0.89418 0.95771 1.70148 1.25101 1.28553 1.00044 1.22674 1.02149 0.94975 1.00479 1.23210 1.07587 1.04937 0.82359 1.45422 1.38307 1.22848 1.07154 1.22155 0.95549 0.97707 0.87059 1.21650 0.96701 0.96446 0.87724 1.55571 1.57141 1.32294 1.42399 1.01214 0.72547 0.72596 0.72943 1.93544 1.81771 1.39456 1.83919 1.93571 1.84542 1.64618 1.56545 1.57371 1.35530 1.25553 1.64750 1.21351 1.01820 0.84982 0.96057 1.18866 0.87107 0.85525 0.94896 0.93351 1.22369 1.01138 1.00578 0.97528 1.21485 0.94427 0.97825 1.43119 0.94388 1.25836 0.94548 1.03320 0.94809 1.70042 1.02270 1.37957 1.48392 0.85961 0.79198 0.79274 0.78678 1.17887 1.16572 1.22938 0.92723 0.90203 0.92697 0.88795 0.93570 0.90311 0.92460 0.80215 0.77928 0.86717 0.85194 0.90018 0.90669 0.73341 0.94899 0.89984 0.89893 0.94098 0.91610 0.90574 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 9.17 71.98 0.66 -1.21 16 2 C -0.02 -0.25 3.25 -11.54 -0.04 -0.29 16 3 C -0.14 -2.39 9.18 71.98 0.66 -1.73 16 4 C 0.20 3.98 6.41 138.13 0.89 4.87 16 5 N -0.52 -12.22 11.25 -188.13 -2.12 -14.33 16 6 C -0.06 -1.07 11.87 83.53 0.99 -0.08 16 7 C -0.05 -0.73 11.58 83.09 0.96 0.24 16 8 N -0.45 -7.07 2.75 -514.27 -1.41 -8.48 16 9 C 0.10 1.05 5.83 86.38 0.50 1.55 16 10 C 0.10 1.60 6.57 86.38 0.57 2.17 16 11 N -1.11 -21.49 6.05 -187.49 -1.14 -22.63 16 12 S 2.80 92.36 6.09 -56.49 -0.34 92.01 16 13 O -1.00 -36.59 16.68 -128.00 -2.14 -38.72 16 14 O -1.01 -41.41 16.70 -128.00 -2.14 -43.55 16 15 N -0.99 -35.95 3.12 -520.42 -1.62 -37.57 16 16 C 0.10 3.31 9.53 127.77 1.22 4.53 16 17 C 0.24 10.33 2.21 44.25 0.10 10.43 16 18 H 0.05 2.17 5.97 -2.39 -0.01 2.15 16 19 C -0.16 -5.48 8.65 71.99 0.62 -4.86 16 20 C -0.53 -29.02 8.95 25.60 0.23 -28.79 16 21 H 0.04 2.35 7.89 -2.91 -0.02 2.32 16 22 C 0.01 0.72 5.45 84.65 0.46 1.19 16 23 N -0.95 -58.10 13.96 21.45 0.30 -57.80 16 24 Si 0.94 42.14 24.37 68.60 1.67 43.81 16 25 H -0.25 -10.31 6.88 99.48 0.68 -9.63 16 26 H -0.24 -9.83 6.52 99.48 0.65 -9.18 16 27 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.09 1.28 6.85 -2.39 -0.02 1.26 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.18 2.69 8.06 -2.91 -0.02 2.67 16 36 H 0.20 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.11 0.92 7.28 -2.39 -0.02 0.90 16 38 H 0.13 0.72 8.13 -2.38 -0.02 0.70 16 39 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.07 1.38 7.75 -2.38 -0.02 1.36 16 41 H 0.43 5.90 8.65 -96.75 -0.84 5.06 16 42 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.08 2.05 7.79 -2.39 -0.02 2.03 16 44 H 0.08 2.48 6.43 -2.38 -0.02 2.46 16 45 H 0.04 1.51 3.28 -2.39 -0.01 1.50 16 46 H 0.06 2.20 6.66 -2.39 -0.02 2.19 16 47 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -79.47 394.53 -1.07 -80.54 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.04 Total: 18.71 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: 7.82 Total: -11.98 kcal Atomic # 7 Polarization: -134.83 SS G_CDS: -5.99 Total: -140.82 kcal Atomic # 8 Polarization: -78.00 SS G_CDS: -4.27 Total: -82.27 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 1.67 Total: 43.81 kcal Atomic # 16 Polarization: 92.36 SS G_CDS: -0.34 Total: 92.01 kcal Total: -79.47 -1.07 -80.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921526486.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.201 kcal (2) G-P(sol) polarization free energy of solvation -79.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds