Wall clock time and date at job start Wed Apr 1 2020 03:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46850 * 2 1 4 4 C 1.50696 * 109.47117 * 120.00104 * 2 1 3 5 5 N 1.30498 * 125.65039 * 300.02236 * 4 2 1 6 6 C 1.34129 * 109.25671 * 179.73373 * 5 4 2 7 7 C 1.34666 * 108.02165 * 0.40230 * 6 5 4 8 8 N 1.35047 * 125.65399 * 119.99774 * 4 2 1 9 9 C 1.46507 * 126.39328 * 0.02641 * 8 4 2 10 10 C 1.52992 * 109.47505 * 85.01935 * 9 8 4 11 11 N 1.46498 * 109.47492 * 179.97438 * 10 9 8 12 12 S 1.65602 * 120.00269 * 164.99696 * 11 10 9 13 13 O 1.42098 * 106.39869 * 178.54190 * 12 11 10 14 14 O 1.42100 * 106.40336 * 311.46435 * 12 11 10 15 15 N 1.65605 * 107.21489 * 65.00554 * 12 11 10 16 16 C 1.46501 * 120.00057 * 89.99843 * 15 12 11 17 17 C 1.46497 * 119.99801 * 269.99795 * 15 12 11 18 18 H 1.09007 * 109.47225 * 359.97438 * 17 15 12 19 19 C 1.53000 * 109.47373 * 119.99934 * 17 15 12 20 20 C 1.50693 * 109.47234 * 240.00014 * 17 15 12 21 21 H 1.08003 * 120.00123 * 0.02562 * 20 17 15 22 22 C 1.37879 * 120.00181 * 179.97438 * 20 17 15 23 23 N 1.31512 * 120.00195 * 0.02562 * 22 20 17 24 24 Si 1.86805 * 120.00135 * 180.02562 * 22 20 17 25 25 H 1.48493 * 109.47195 * 89.99940 * 24 22 20 26 26 H 1.48496 * 109.46980 * 210.00400 * 24 22 20 27 27 H 1.48506 * 109.46763 * 330.00139 * 24 22 20 28 28 H 1.09000 * 109.47224 * 299.99697 * 1 2 3 29 29 H 1.09000 * 109.47450 * 59.99883 * 1 2 3 30 30 H 1.09005 * 109.47013 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46769 * 240.00023 * 2 1 3 32 32 H 1.09004 * 109.46655 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47289 * 299.99328 * 3 2 1 34 34 H 1.09000 * 109.47415 * 60.00418 * 3 2 1 35 35 H 1.08003 * 125.99108 * 180.25065 * 6 5 4 36 36 H 1.08002 * 126.59556 * 179.87817 * 7 6 5 37 37 H 1.09000 * 109.46583 * 205.02344 * 9 8 4 38 38 H 1.09008 * 109.46472 * 325.01713 * 9 8 4 39 39 H 1.09001 * 109.47324 * 300.00335 * 10 9 8 40 40 H 1.09001 * 109.46832 * 59.99749 * 10 9 8 41 41 H 0.97007 * 119.99758 * 345.00403 * 11 10 9 42 42 H 1.08998 * 109.46904 * 89.99979 * 16 15 12 43 43 H 1.09001 * 109.47045 * 209.99961 * 16 15 12 44 44 H 1.08995 * 109.47014 * 329.99693 * 16 15 12 45 45 H 1.08996 * 109.47537 * 180.02562 * 19 17 15 46 46 H 1.09005 * 109.47116 * 299.99986 * 19 17 15 47 47 H 1.09007 * 109.46892 * 59.99861 * 19 17 15 48 48 H 0.96997 * 120.00441 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7856 -0.3623 2.4637 6 6 2.3883 -1.2246 3.2957 7 6 3.0403 -2.1367 2.5498 8 7 2.8120 -1.8131 1.2396 9 6 3.3189 -2.5290 0.0662 10 6 4.6107 -1.8668 -0.4167 11 7 5.1179 -2.5831 -1.5897 12 16 6.2785 -1.8893 -2.5458 13 8 6.5777 -2.8348 -3.5635 14 8 5.8354 -0.5671 -2.8191 15 7 7.6479 -1.7429 -1.6262 16 6 8.6305 -2.8292 -1.5973 17 6 7.8769 -0.5271 -0.8416 18 1 7.0452 0.1621 -0.9886 19 6 7.9837 -0.8894 0.6410 20 6 9.1570 0.1279 -1.2921 21 1 9.7415 -0.3168 -2.0841 22 6 9.5817 1.2954 -0.6941 23 7 8.8698 1.8372 0.2698 24 14 11.1683 2.1077 -1.2531 25 1 10.8742 3.0675 -2.3474 26 1 11.7826 2.8317 -0.1114 27 1 12.1093 1.0694 -1.7449 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 2.3582 -1.1916 4.3748 36 1 3.6267 -2.9668 2.9151 37 1 3.5200 -3.5667 0.3326 38 1 2.5742 -2.4959 -0.7292 39 1 4.4096 -0.8292 -0.6831 40 1 5.3552 -1.8999 0.3788 41 1 4.7738 -3.4639 -1.8063 42 1 9.3648 -2.6760 -2.3881 43 1 9.1340 -2.8381 -0.6306 44 1 8.1236 -3.7817 -1.7516 45 1 8.1536 0.0152 1.2249 46 1 7.0577 -1.3632 0.9670 47 1 8.8155 -1.5785 0.7876 48 1 9.1683 2.6587 0.6903 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921526487.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:22 Heat of formation + Delta-G solvation = -20.539253 kcal Electronic energy + Delta-G solvation = -29869.848732 eV Core-core repulsion = 25894.752301 eV Total energy + Delta-G solvation = -3975.096431 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.17936 -36.91008 -36.37662 -36.17764 -35.37541 -35.34256 -33.32709 -32.63500 -29.19015 -28.94193 -28.15481 -27.15334 -25.68502 -25.21554 -23.60713 -22.73786 -21.26590 -20.87878 -19.39291 -18.79289 -17.59176 -17.03977 -17.00792 -16.33733 -16.19250 -15.46868 -15.20892 -14.91047 -14.49514 -14.34109 -14.28532 -13.66634 -13.54879 -13.45273 -13.25251 -13.13327 -12.89084 -12.52379 -12.15180 -12.14327 -12.05982 -11.82956 -11.66202 -11.55761 -11.52227 -11.43978 -11.29024 -11.20145 -11.01606 -10.96870 -10.86955 -10.50989 -10.33764 -10.08204 -9.92401 -9.68608 -9.47581 -9.32965 -8.49710 -8.34937 -8.07230 -6.11532 -4.18510 1.03228 2.02030 2.61868 3.18598 3.26910 3.33620 3.35639 3.42689 3.97844 4.30521 4.36435 4.38636 4.48568 4.64300 4.89289 4.91269 4.99445 5.08860 5.19585 5.21063 5.37145 5.39269 5.50004 5.56938 5.63540 5.66428 5.79192 5.82241 5.88718 5.94327 6.06843 6.15740 6.29227 6.31288 6.37207 6.53568 6.67121 6.70678 6.77712 6.88914 6.95486 7.14068 7.38261 7.55834 7.72201 7.97666 8.13237 8.21341 8.83609 9.47804 10.94115 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011091 B = 0.003822 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.999002 B = 7323.587521 C = 8272.053290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.012 4.012 3 C -0.143 4.143 4 C 0.219 3.781 5 N -0.486 5.486 6 C -0.028 4.028 7 C -0.057 4.057 8 N -0.454 5.454 9 C 0.099 3.901 10 C 0.103 3.897 11 N -1.133 6.133 12 S 2.779 3.221 13 O -0.993 6.993 14 O -0.970 6.970 15 N -0.989 5.989 16 C 0.110 3.890 17 C 0.267 3.733 18 H 0.058 0.942 19 C -0.148 4.148 20 C -0.522 4.522 21 H 0.062 0.938 22 C 0.065 3.935 23 N -0.889 5.889 24 Si 0.898 3.102 25 H -0.279 1.279 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.168 0.832 36 H 0.173 0.827 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.409 0.591 42 H 0.050 0.950 43 H 0.072 0.928 44 H 0.048 0.952 45 H 0.094 0.906 46 H 0.009 0.991 47 H 0.034 0.966 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.003 -10.332 2.520 16.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.033 4.033 3 C -0.201 4.201 4 C -0.044 4.044 5 N -0.204 5.204 6 C -0.176 4.176 7 C -0.190 4.190 8 N -0.137 5.137 9 C -0.025 4.025 10 C -0.024 4.024 11 N -0.892 5.892 12 S 2.788 3.212 13 O -0.977 6.977 14 O -0.953 6.953 15 N -0.833 5.833 16 C -0.036 4.036 17 C 0.164 3.836 18 H 0.076 0.924 19 C -0.208 4.208 20 C -0.561 4.561 21 H 0.081 0.919 22 C -0.138 4.138 23 N -0.527 5.527 24 Si 0.726 3.274 25 H -0.205 1.205 26 H -0.211 1.211 27 H -0.199 1.199 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.185 0.815 36 H 0.190 0.810 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.242 0.758 42 H 0.068 0.932 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.113 0.887 46 H 0.028 0.972 47 H 0.053 0.947 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.454 -9.127 1.919 16.371 hybrid contribution 1.503 -0.912 0.012 1.758 sum -11.951 -10.039 1.931 15.727 Atomic orbital electron populations 1.21772 0.93212 1.01813 1.02767 1.19615 0.96478 0.96331 0.90844 1.21802 1.01966 0.93677 1.02622 1.23274 0.96832 0.88541 0.95736 1.70182 1.24324 1.26896 0.98969 1.22261 1.01318 0.94437 0.99557 1.22690 1.08324 1.05211 0.82731 1.45286 1.38630 1.23289 1.06486 1.22013 0.96652 0.96710 0.87146 1.21594 0.95205 0.96958 0.88687 1.56206 1.59064 1.31240 1.42670 1.02016 0.72883 0.73155 0.73172 1.93560 1.84411 1.64446 1.55279 1.93609 1.81119 1.37415 1.83154 1.57691 1.33861 1.26310 1.65394 1.21142 0.92577 0.86997 1.02879 1.18754 0.98550 0.79170 0.87094 0.92422 1.22172 0.96799 1.02163 0.99636 1.21297 1.07068 1.08107 1.19650 0.91930 1.24903 0.97365 0.96698 0.94823 1.69844 1.38430 1.20057 1.24406 0.86498 0.83103 0.79539 0.78288 1.20508 1.21143 1.19874 0.91359 0.91822 0.93050 0.90028 0.91937 0.91735 0.91407 0.81452 0.80973 0.88290 0.88403 0.89464 0.90167 0.75835 0.93164 0.90945 0.93314 0.88747 0.97249 0.94660 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.18 37.16 0.34 -0.99 16 2 C -0.01 -0.14 3.25 -91.77 -0.30 -0.44 16 3 C -0.14 -1.76 9.18 37.16 0.34 -1.42 16 4 C 0.22 2.90 6.41 -155.42 -1.00 1.91 16 5 N -0.49 -7.14 11.25 -10.82 -0.12 -7.26 16 6 C -0.03 -0.36 11.87 -17.81 -0.21 -0.57 16 7 C -0.06 -0.65 11.58 -16.56 -0.19 -0.84 16 8 N -0.45 -5.33 2.75 -113.90 -0.31 -5.64 16 9 C 0.10 0.94 5.83 -4.04 -0.02 0.91 16 10 C 0.10 1.31 6.57 -4.05 -0.03 1.28 16 11 N -1.13 -14.38 6.05 -10.62 -0.06 -14.44 16 12 S 2.78 50.65 6.10 -107.50 -0.66 50.00 16 13 O -0.99 -19.34 17.21 -57.17 -0.98 -20.32 16 14 O -0.97 -21.36 16.17 -57.17 -0.92 -22.28 16 15 N -0.99 -19.46 3.12 -115.86 -0.36 -19.82 16 16 C 0.11 1.87 9.53 59.85 0.57 2.44 16 17 C 0.27 6.26 2.62 -69.09 -0.18 6.08 16 18 H 0.06 1.51 6.91 -51.92 -0.36 1.15 16 19 C -0.15 -3.21 8.95 37.16 0.33 -2.88 16 20 C -0.52 -13.74 8.37 -34.44 -0.29 -14.03 16 21 H 0.06 1.65 7.65 -52.48 -0.40 1.25 16 22 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 23 N -0.89 -24.35 11.32 55.43 0.63 -23.72 16 24 Si 0.90 20.90 29.54 -169.99 -5.02 15.87 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.86 6.85 -51.93 -0.36 0.50 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.17 1.72 8.06 -52.48 -0.42 1.29 16 36 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.10 0.78 7.28 -51.92 -0.38 0.40 16 39 H 0.09 1.30 7.75 -51.93 -0.40 0.89 16 40 H 0.08 1.10 6.18 -51.93 -0.32 0.78 16 41 H 0.41 3.81 8.65 -34.47 -0.30 3.51 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 1.19 6.43 -51.93 -0.33 0.85 16 44 H 0.05 0.68 7.79 -51.93 -0.40 0.27 16 45 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 46 H 0.01 0.16 6.18 -51.93 -0.32 -0.16 16 47 H 0.03 0.72 6.66 -51.92 -0.35 0.38 16 48 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 397.43 15.07 5.99 5.99 Total: -1.00 -33.52 397.43 -10.15 -43.68 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -7.60 Total: 4.86 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -0.73 Total: -6.91 kcal Atomic # 7 Polarization: -70.65 SS G_CDS: -0.23 Total: -70.89 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -1.91 Total: -42.60 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 50.65 SS G_CDS: -0.66 Total: 50.00 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.52 -10.15 -43.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921526487.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.138 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds