Wall clock time and date at job start Wed Apr 1 2020 03:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46850 * 2 1 4 4 C 1.50696 * 109.47117 * 120.00104 * 2 1 3 5 5 N 1.30498 * 125.65039 * 300.02236 * 4 2 1 6 6 C 1.34129 * 109.25671 * 179.73373 * 5 4 2 7 7 C 1.34666 * 108.02165 * 0.40230 * 6 5 4 8 8 N 1.35047 * 125.65399 * 119.99774 * 4 2 1 9 9 C 1.46507 * 126.39328 * 0.02641 * 8 4 2 10 10 C 1.52992 * 109.47505 * 85.01935 * 9 8 4 11 11 N 1.46498 * 109.47492 * 179.97438 * 10 9 8 12 12 S 1.65602 * 120.00269 * 164.99696 * 11 10 9 13 13 O 1.42098 * 106.39869 * 178.54190 * 12 11 10 14 14 O 1.42100 * 106.40336 * 311.46435 * 12 11 10 15 15 N 1.65605 * 107.21489 * 65.00554 * 12 11 10 16 16 C 1.46501 * 120.00057 * 89.99843 * 15 12 11 17 17 C 1.46497 * 119.99801 * 269.99795 * 15 12 11 18 18 H 1.09007 * 109.47225 * 359.97438 * 17 15 12 19 19 C 1.53000 * 109.47373 * 119.99934 * 17 15 12 20 20 C 1.50693 * 109.47234 * 240.00014 * 17 15 12 21 21 H 1.08003 * 120.00123 * 0.02562 * 20 17 15 22 22 C 1.37879 * 120.00181 * 179.97438 * 20 17 15 23 23 N 1.31512 * 120.00195 * 0.02562 * 22 20 17 24 24 Si 1.86805 * 120.00135 * 180.02562 * 22 20 17 25 25 H 1.48493 * 109.47195 * 89.99940 * 24 22 20 26 26 H 1.48496 * 109.46980 * 210.00400 * 24 22 20 27 27 H 1.48506 * 109.46763 * 330.00139 * 24 22 20 28 28 H 1.09000 * 109.47224 * 299.99697 * 1 2 3 29 29 H 1.09000 * 109.47450 * 59.99883 * 1 2 3 30 30 H 1.09005 * 109.47013 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46769 * 240.00023 * 2 1 3 32 32 H 1.09004 * 109.46655 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47289 * 299.99328 * 3 2 1 34 34 H 1.09000 * 109.47415 * 60.00418 * 3 2 1 35 35 H 1.08003 * 125.99108 * 180.25065 * 6 5 4 36 36 H 1.08002 * 126.59556 * 179.87817 * 7 6 5 37 37 H 1.09000 * 109.46583 * 205.02344 * 9 8 4 38 38 H 1.09008 * 109.46472 * 325.01713 * 9 8 4 39 39 H 1.09001 * 109.47324 * 300.00335 * 10 9 8 40 40 H 1.09001 * 109.46832 * 59.99749 * 10 9 8 41 41 H 0.97007 * 119.99758 * 345.00403 * 11 10 9 42 42 H 1.08998 * 109.46904 * 89.99979 * 16 15 12 43 43 H 1.09001 * 109.47045 * 209.99961 * 16 15 12 44 44 H 1.08995 * 109.47014 * 329.99693 * 16 15 12 45 45 H 1.08996 * 109.47537 * 180.02562 * 19 17 15 46 46 H 1.09005 * 109.47116 * 299.99986 * 19 17 15 47 47 H 1.09007 * 109.46892 * 59.99861 * 19 17 15 48 48 H 0.96997 * 120.00441 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7856 -0.3623 2.4637 6 6 2.3883 -1.2246 3.2957 7 6 3.0403 -2.1367 2.5498 8 7 2.8120 -1.8131 1.2396 9 6 3.3189 -2.5290 0.0662 10 6 4.6107 -1.8668 -0.4167 11 7 5.1179 -2.5831 -1.5897 12 16 6.2785 -1.8893 -2.5458 13 8 6.5777 -2.8348 -3.5635 14 8 5.8354 -0.5671 -2.8191 15 7 7.6479 -1.7429 -1.6262 16 6 8.6305 -2.8292 -1.5973 17 6 7.8769 -0.5271 -0.8416 18 1 7.0452 0.1621 -0.9886 19 6 7.9837 -0.8894 0.6410 20 6 9.1570 0.1279 -1.2921 21 1 9.7415 -0.3168 -2.0841 22 6 9.5817 1.2954 -0.6941 23 7 8.8698 1.8372 0.2698 24 14 11.1683 2.1077 -1.2531 25 1 10.8742 3.0675 -2.3474 26 1 11.7826 2.8317 -0.1114 27 1 12.1093 1.0694 -1.7449 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 2.3582 -1.1916 4.3748 36 1 3.6267 -2.9668 2.9151 37 1 3.5200 -3.5667 0.3326 38 1 2.5742 -2.4959 -0.7292 39 1 4.4096 -0.8292 -0.6831 40 1 5.3552 -1.8999 0.3788 41 1 4.7738 -3.4639 -1.8063 42 1 9.3648 -2.6760 -2.3881 43 1 9.1340 -2.8381 -0.6306 44 1 8.1236 -3.7817 -1.7516 45 1 8.1536 0.0152 1.2249 46 1 7.0577 -1.3632 0.9670 47 1 8.8155 -1.5785 0.7876 48 1 9.1683 2.6587 0.6903 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921526487.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:21 Heat of formation + Delta-G solvation = -44.041872 kcal Electronic energy + Delta-G solvation = -29870.867882 eV Core-core repulsion = 25894.752301 eV Total energy + Delta-G solvation = -3976.115581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.08226 -38.43361 -37.93148 -37.36663 -36.92747 -36.26039 -34.54837 -34.33152 -30.94843 -29.86448 -29.11449 -28.04099 -27.32135 -27.02662 -24.58931 -23.64470 -22.63870 -22.14099 -20.58610 -19.93111 -18.98751 -18.58754 -18.20723 -17.91807 -17.49231 -16.81327 -16.41590 -16.20702 -15.71983 -15.46565 -15.22276 -15.17191 -14.86404 -14.62505 -14.51646 -14.33354 -13.97788 -13.76605 -13.58434 -13.37890 -13.24981 -13.18206 -13.06690 -13.01435 -12.96081 -12.82713 -12.79451 -12.61837 -12.39076 -12.22936 -12.16489 -12.11950 -11.90952 -11.85841 -11.16650 -10.88926 -10.72754 -10.57281 -10.48140 -9.71176 -9.25470 -8.13465 -6.27024 -0.41467 1.10722 1.40849 1.43213 1.51713 1.69851 2.10633 2.23526 2.41923 2.60387 3.15331 3.34554 3.44632 3.60146 3.67412 3.78911 4.04292 4.14565 4.17560 4.20585 4.32067 4.34752 4.41698 4.63722 4.67066 4.76755 4.78751 4.80985 4.83594 4.91398 4.95960 4.99204 5.05425 5.08091 5.10544 5.18313 5.30508 5.34263 5.45781 5.59414 5.67344 5.84948 5.90663 6.05190 6.14344 6.25829 6.28842 6.80648 7.20610 7.42426 8.90272 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011091 B = 0.003822 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.999002 B = 7323.587521 C = 8272.053290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.014 4.014 3 C -0.140 4.140 4 C 0.201 3.799 5 N -0.520 5.520 6 C -0.057 4.057 7 C -0.049 4.049 8 N -0.455 5.455 9 C 0.103 3.897 10 C 0.104 3.896 11 N -1.107 6.107 12 S 2.797 3.203 13 O -1.004 7.004 14 O -1.013 7.013 15 N -0.998 5.998 16 C 0.103 3.897 17 C 0.274 3.726 18 H 0.024 0.976 19 C -0.135 4.135 20 C -0.539 4.539 21 H 0.056 0.944 22 C 0.020 3.980 23 N -0.912 5.912 24 Si 0.952 3.048 25 H -0.283 1.283 26 H -0.280 1.280 27 H -0.266 1.266 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.033 0.967 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.182 0.818 36 H 0.206 0.794 37 H 0.136 0.864 38 H 0.117 0.883 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.430 0.570 42 H 0.040 0.960 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.063 0.937 46 H 0.036 0.964 47 H 0.044 0.956 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.293 -12.801 2.372 18.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.034 4.034 3 C -0.198 4.198 4 C -0.062 4.062 5 N -0.239 5.239 6 C -0.204 4.204 7 C -0.181 4.181 8 N -0.138 5.138 9 C -0.021 4.021 10 C -0.024 4.024 11 N -0.871 5.871 12 S 2.805 3.195 13 O -0.988 6.988 14 O -0.996 6.996 15 N -0.840 5.840 16 C -0.042 4.042 17 C 0.170 3.830 18 H 0.042 0.958 19 C -0.194 4.194 20 C -0.579 4.579 21 H 0.074 0.926 22 C -0.181 4.181 23 N -0.552 5.552 24 Si 0.778 3.222 25 H -0.209 1.209 26 H -0.205 1.205 27 H -0.190 1.190 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.052 0.948 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.199 0.801 36 H 0.223 0.777 37 H 0.154 0.846 38 H 0.135 0.865 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.268 0.732 42 H 0.059 0.941 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.082 0.918 46 H 0.055 0.945 47 H 0.063 0.937 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.735 -11.637 1.753 18.087 hybrid contribution 1.559 -0.179 0.056 1.570 sum -12.175 -11.816 1.809 17.062 Atomic orbital electron populations 1.21709 0.91736 1.02379 1.02945 1.19701 0.97678 0.95302 0.90766 1.21762 1.00027 0.95024 1.02962 1.23548 0.97484 0.89331 0.95811 1.70128 1.25599 1.28112 1.00041 1.22691 1.02181 0.94970 1.00523 1.23223 1.07267 1.05282 0.82337 1.45432 1.38116 1.23015 1.07268 1.22165 0.95147 0.97688 0.87096 1.21566 0.96843 0.96038 0.87906 1.55512 1.57475 1.32073 1.42071 1.01245 0.72943 0.72238 0.73036 1.93540 1.84834 1.64284 1.56116 1.93560 1.81779 1.40229 1.84052 1.57574 1.35446 1.25970 1.64963 1.21349 0.92455 0.87524 1.02897 1.18371 0.95976 0.80099 0.88541 0.95815 1.21943 0.98572 1.01080 0.97814 1.21648 1.08167 1.08616 1.19447 0.92559 1.25605 1.00086 0.97349 0.95012 1.69968 1.39679 1.20294 1.25215 0.85651 0.80091 0.78663 0.77816 1.20869 1.20520 1.19034 0.92681 0.90096 0.92250 0.88962 0.94774 0.90111 0.92333 0.80061 0.77712 0.84562 0.86455 0.92232 0.90975 0.73248 0.94121 0.90432 0.89798 0.91797 0.94500 0.93733 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 9.18 71.98 0.66 -1.70 16 2 C -0.01 -0.32 3.25 -11.54 -0.04 -0.36 16 3 C -0.14 -3.57 9.18 71.98 0.66 -2.91 16 4 C 0.20 5.22 6.41 138.13 0.89 6.11 16 5 N -0.52 -15.33 11.25 -188.13 -2.12 -17.45 16 6 C -0.06 -1.40 11.87 83.52 0.99 -0.41 16 7 C -0.05 -0.99 11.58 83.09 0.96 -0.03 16 8 N -0.46 -9.77 2.75 -514.28 -1.42 -11.19 16 9 C 0.10 1.60 5.83 86.38 0.50 2.10 16 10 C 0.10 2.45 6.57 86.38 0.57 3.02 16 11 N -1.11 -25.37 6.05 -187.50 -1.14 -26.51 16 12 S 2.80 99.22 6.10 -56.49 -0.34 98.88 16 13 O -1.00 -37.29 17.21 -128.00 -2.20 -39.49 16 14 O -1.01 -45.30 16.17 -128.00 -2.07 -47.37 16 15 N -1.00 -38.43 3.12 -520.46 -1.62 -40.06 16 16 C 0.10 3.31 9.53 127.77 1.22 4.52 16 17 C 0.27 12.98 2.62 44.24 0.12 13.10 16 18 H 0.02 1.30 6.91 -2.38 -0.02 1.28 16 19 C -0.13 -5.78 8.95 71.98 0.64 -5.14 16 20 C -0.54 -28.73 8.37 25.60 0.21 -28.52 16 21 H 0.06 2.99 7.65 -2.91 -0.02 2.97 16 22 C 0.02 1.05 5.30 84.66 0.45 1.50 16 23 N -0.91 -51.01 11.32 21.45 0.24 -50.76 16 24 Si 0.95 43.06 29.54 68.60 2.03 45.09 16 25 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 26 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 28 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.09 1.83 6.85 -2.39 -0.02 1.81 16 32 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.18 3.62 8.06 -2.91 -0.02 3.60 16 36 H 0.21 2.62 8.06 -2.91 -0.02 2.60 16 37 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.12 1.42 7.28 -2.38 -0.02 1.40 16 39 H 0.06 1.78 7.75 -2.39 -0.02 1.76 16 40 H 0.07 1.84 6.18 -2.39 -0.01 1.82 16 41 H 0.43 6.36 8.65 -96.74 -0.84 5.52 16 42 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.08 2.39 6.43 -2.39 -0.02 2.37 16 44 H 0.08 2.07 7.79 -2.39 -0.02 2.05 16 45 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 46 H 0.04 1.33 6.18 -2.38 -0.01 1.32 16 47 H 0.04 1.78 6.66 -2.38 -0.02 1.77 16 48 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -74.75 397.43 -0.68 -75.43 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.13 Total: 22.15 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 7.83 Total: -8.71 kcal Atomic # 7 Polarization: -139.92 SS G_CDS: -6.05 Total: -145.97 kcal Atomic # 8 Polarization: -82.59 SS G_CDS: -4.27 Total: -86.87 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: 99.22 SS G_CDS: -0.34 Total: 98.88 kcal Total: -74.75 -0.68 -75.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921526487.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.392 kcal (2) G-P(sol) polarization free energy of solvation -74.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds