Wall clock time and date at job start Wed Apr 1 2020 03:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47046 * 2 1 4 4 C 1.52998 * 109.47606 * 120.00006 * 2 1 3 5 5 H 1.08994 * 109.47388 * 297.32050 * 4 2 1 6 6 N 1.46500 * 109.46879 * 57.31903 * 4 2 1 7 7 S 1.65600 * 120.00119 * 213.75464 * 6 4 2 8 8 O 1.42099 * 106.39985 * 312.66245 * 7 6 4 9 9 O 1.42096 * 106.40300 * 179.74327 * 7 6 4 10 10 N 1.65595 * 107.21484 * 66.20332 * 7 6 4 11 11 C 1.46503 * 119.99986 * 274.76242 * 10 7 6 12 12 C 1.46500 * 120.00333 * 94.76814 * 10 7 6 13 13 H 1.09002 * 109.46756 * 0.41660 * 12 10 7 14 14 C 1.52999 * 109.47304 * 240.41008 * 12 10 7 15 15 C 1.50701 * 109.47162 * 120.41264 * 12 10 7 16 16 H 1.08001 * 120.00293 * 5.43233 * 15 12 10 17 17 C 1.37875 * 119.99873 * 185.43602 * 15 12 10 18 18 N 1.31521 * 119.99828 * 196.80277 * 17 15 12 19 19 Si 1.86800 * 120.00332 * 16.80551 * 17 15 12 20 20 H 1.48497 * 109.47306 * 94.49234 * 19 17 15 21 21 H 1.48495 * 109.47169 * 214.49916 * 19 17 15 22 22 H 1.48505 * 109.47005 * 334.49535 * 19 17 15 23 23 C 1.50698 * 109.47213 * 177.31982 * 4 2 1 24 24 C 1.39877 * 126.04155 * 280.02470 * 23 4 2 25 25 N 1.30831 * 108.20052 * 179.97438 * 24 23 4 26 26 N 1.40077 * 108.20883 * 0.02562 * 25 24 23 27 27 C 1.46504 * 126.03766 * 179.97438 * 26 25 24 28 28 C 1.34943 * 107.92731 * 359.75637 * 26 25 24 29 29 H 1.09006 * 109.46895 * 301.78235 * 1 2 3 30 30 H 1.08992 * 109.47489 * 61.78585 * 1 2 3 31 31 H 1.08998 * 109.47287 * 181.78924 * 1 2 3 32 32 H 1.08999 * 109.47484 * 240.00597 * 2 1 3 33 33 H 1.08999 * 109.47516 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47293 * 300.00473 * 3 2 1 35 35 H 1.09000 * 109.47181 * 60.00278 * 3 2 1 36 36 H 0.97006 * 120.00044 * 33.75876 * 6 4 2 37 37 H 1.08998 * 109.47859 * 273.77723 * 11 10 7 38 38 H 1.09005 * 109.46766 * 33.77916 * 11 10 7 39 39 H 1.09007 * 109.47133 * 153.77097 * 11 10 7 40 40 H 1.09010 * 109.46576 * 59.02777 * 14 12 10 41 41 H 1.09000 * 109.47242 * 179.02031 * 14 12 10 42 42 H 1.08992 * 109.47496 * 299.02747 * 14 12 10 43 43 H 0.96998 * 119.99470 * 179.97438 * 18 17 15 44 44 H 1.07996 * 125.89743 * 0.02562 * 24 23 4 45 45 H 1.09005 * 109.46965 * 89.97436 * 27 26 25 46 46 H 1.08999 * 109.47377 * 209.97278 * 27 26 25 47 47 H 1.08996 * 109.47234 * 329.97828 * 27 26 25 48 48 H 1.08008 * 126.13175 * 180.24283 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7165 -0.1805 2.1385 6 7 1.4997 -2.0825 1.2819 7 16 1.1391 -2.7956 2.7324 8 8 2.2600 -2.5751 3.5775 9 8 0.6369 -4.0899 2.4293 10 7 -0.1201 -1.9488 3.3952 11 6 0.1431 -0.7437 4.1857 12 6 -1.4974 -2.4046 3.1912 13 1 -1.4939 -3.3133 2.5892 14 6 -2.2930 -1.3163 2.4676 15 6 -2.1353 -2.6891 4.5266 16 1 -1.6032 -2.4622 5.4386 17 6 -3.3983 -3.2392 4.5840 18 7 -4.0884 -3.1863 5.7023 19 14 -4.1293 -4.0598 3.0734 20 1 -3.8647 -5.5201 3.1265 21 1 -5.5949 -3.8230 3.0419 22 1 -3.5092 -3.4886 1.8509 23 6 3.5456 -0.7790 1.2163 24 6 4.3186 -1.6869 0.4851 25 7 5.5802 -1.4237 0.7103 26 7 5.6501 -0.3388 1.5936 27 6 6.8763 0.2775 2.1065 28 6 4.3886 0.0416 1.8850 29 1 -0.3633 0.5413 0.8736 30 1 -0.3634 0.4858 -0.9055 31 1 -0.3634 -1.0271 0.0321 32 1 1.8933 -0.5137 -0.8900 33 1 3.1299 1.4427 -0.0005 34 1 1.6765 1.9565 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.3532 -2.5663 0.4539 37 1 0.3379 -1.0236 5.2210 38 1 1.0119 -0.2255 3.7797 39 1 -0.7247 -0.0853 4.1444 40 1 -1.8216 -1.0983 1.5092 41 1 -3.3130 -1.6623 2.3004 42 1 -2.3110 -0.4131 3.0775 43 1 -4.9771 -3.5730 5.7425 44 1 3.9394 -2.4694 -0.1554 45 1 7.1880 1.0787 1.4362 46 1 6.6895 0.6866 3.0994 47 1 7.6635 -0.4740 2.1652 48 1 4.1028 0.8539 2.5369 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921845233.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:30 Heat of formation + Delta-G solvation = 6.372743 kcal Electronic energy + Delta-G solvation = -30560.771949 eV Core-core repulsion = 26586.842509 eV Total energy + Delta-G solvation = -3973.929440 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.32535 -37.63150 -36.65994 -36.27492 -35.22425 -33.31261 -32.70587 -32.46469 -30.42572 -29.92166 -27.41870 -26.86980 -25.74429 -25.07886 -24.77064 -21.50772 -20.81407 -20.73084 -19.91990 -18.73346 -17.34181 -17.24050 -16.99929 -16.28662 -16.08690 -15.51522 -15.18367 -14.78074 -14.37165 -14.29088 -14.03967 -13.66283 -13.42566 -13.25709 -13.00923 -12.80176 -12.74352 -12.63223 -12.50274 -12.34846 -12.21558 -11.96097 -11.86194 -11.64762 -11.49458 -11.40375 -11.18880 -11.08759 -11.02813 -10.92208 -10.84865 -10.55518 -10.44438 -10.23361 -9.64373 -9.46101 -9.45406 -9.39330 -8.46445 -8.40668 -8.05461 -6.14267 -4.08687 1.15724 1.84305 2.45105 2.74957 3.28268 3.36973 3.42994 3.48798 4.11583 4.37048 4.40039 4.66760 4.77063 4.86255 4.90914 4.91967 4.96992 5.10025 5.13366 5.17361 5.18418 5.39836 5.50737 5.54482 5.63627 5.70574 5.75760 5.85094 5.90851 6.00067 6.05748 6.09178 6.24553 6.29487 6.33470 6.44619 6.47850 6.58228 6.58942 6.62921 6.92232 6.95408 7.14552 7.35864 7.48010 7.64492 7.71619 8.48377 8.94715 9.50524 10.98532 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018284 B = 0.003778 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.058592 B = 7410.009000 C = 7865.809386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.143 4.143 4 C 0.240 3.760 5 H 0.088 0.912 6 N -1.124 6.124 7 S 2.779 3.221 8 O -0.984 6.984 9 O -0.979 6.979 10 N -0.984 5.984 11 C 0.109 3.891 12 C 0.242 3.758 13 H 0.054 0.946 14 C -0.157 4.157 15 C -0.528 4.528 16 H 0.080 0.920 17 C 0.080 3.920 18 N -0.887 5.887 19 Si 0.859 3.141 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.254 1.254 23 C -0.240 4.240 24 C 0.065 3.935 25 N -0.301 5.301 26 N -0.378 5.378 27 C 0.103 3.897 28 C 0.068 3.932 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.411 0.589 37 H 0.052 0.948 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.032 0.968 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.264 0.736 44 H 0.178 0.822 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.394 12.310 -12.003 23.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 C -0.201 4.201 4 C 0.131 3.869 5 H 0.106 0.894 6 N -0.881 5.881 7 S 2.788 3.212 8 O -0.967 6.967 9 O -0.963 6.963 10 N -0.826 5.826 11 C -0.037 4.037 12 C 0.138 3.862 13 H 0.071 0.929 14 C -0.216 4.216 15 C -0.567 4.567 16 H 0.098 0.902 17 C -0.124 4.124 18 N -0.524 5.524 19 Si 0.685 3.315 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.178 1.178 23 C -0.253 4.253 24 C -0.122 4.122 25 N -0.122 5.122 26 N -0.160 5.160 27 C -0.038 4.038 28 C -0.079 4.079 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.244 0.756 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.051 0.949 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.195 0.805 45 H 0.090 0.910 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 17.057 11.339 -11.518 23.498 hybrid contribution -1.615 -0.168 -0.881 1.848 sum 15.442 11.170 -12.399 22.736 Atomic orbital electron populations 1.21940 0.94246 1.02750 1.01893 1.21335 0.96206 0.96255 0.97460 1.21797 1.01149 0.95361 1.01828 1.18925 0.86781 0.82038 0.99163 0.89441 1.56300 1.80145 1.25515 1.26129 1.01991 0.73022 0.73149 0.73068 1.93566 1.51286 1.86140 1.65719 1.93595 1.80676 1.37371 1.84684 1.57456 1.20864 1.40161 1.64084 1.21241 1.00012 0.86802 0.95637 1.19007 0.76774 0.92933 0.97503 0.92883 1.22509 1.00219 1.00783 0.98128 1.21110 1.00865 1.42872 0.91869 0.90201 1.24845 0.96251 0.95425 0.95847 1.69975 1.11439 1.43755 1.27225 0.87238 0.78346 0.81044 0.84856 1.20222 1.21206 1.17837 1.20371 0.96560 1.01604 1.06748 1.23590 0.89884 0.99259 0.99427 1.77319 1.20430 1.03600 1.10881 1.48393 1.05601 1.25429 1.36565 1.21820 0.84515 0.98240 0.99263 1.22221 0.84254 1.00780 1.00605 0.92035 0.92831 0.91805 0.90714 0.92532 0.92644 0.92512 0.75600 0.92918 0.93670 0.90543 0.94878 0.92798 0.92753 0.92564 0.80514 0.90981 0.89496 0.89430 0.81070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.25 37.15 0.31 -1.19 16 2 C -0.09 -0.85 2.59 -90.62 -0.23 -1.08 16 3 C -0.14 -1.14 8.95 37.16 0.33 -0.80 16 4 C 0.24 2.71 2.18 -69.08 -0.15 2.56 16 5 H 0.09 0.99 5.61 -51.93 -0.29 0.70 16 6 N -1.12 -14.96 4.39 -5.89 -0.03 -14.98 16 7 S 2.78 51.97 6.03 -107.50 -0.65 51.32 16 8 O -0.98 -20.18 17.18 -57.17 -0.98 -21.16 16 9 O -0.98 -21.92 16.57 -57.17 -0.95 -22.87 16 10 N -0.98 -19.00 3.12 -115.85 -0.36 -19.37 16 11 C 0.11 1.81 9.28 59.85 0.56 2.36 16 12 C 0.24 5.46 2.18 -69.08 -0.15 5.31 16 13 H 0.05 1.28 5.28 -51.93 -0.27 1.00 16 14 C -0.16 -3.05 8.57 37.16 0.32 -2.73 16 15 C -0.53 -14.33 8.82 -34.44 -0.30 -14.63 16 16 H 0.08 2.35 7.78 -52.49 -0.41 1.94 16 17 C 0.08 2.24 5.34 -17.82 -0.10 2.14 16 18 N -0.89 -26.33 13.96 55.43 0.77 -25.56 16 19 Si 0.86 20.89 25.88 -169.99 -4.40 16.49 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.25 -5.69 5.53 56.52 0.31 -5.38 16 23 C -0.24 -2.85 4.20 -105.05 -0.44 -3.29 16 24 C 0.06 0.82 11.66 -17.36 -0.20 0.62 16 25 N -0.30 -4.08 12.57 30.62 0.39 -3.70 16 26 N -0.38 -4.22 4.01 -68.16 -0.27 -4.50 16 27 C 0.10 0.69 11.47 59.85 0.69 1.38 16 28 C 0.07 0.73 10.70 -17.23 -0.18 0.55 16 29 H 0.06 0.63 7.94 -51.93 -0.41 0.22 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.70 6.55 -51.93 -0.34 0.36 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.46 6.78 -51.93 -0.35 0.11 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.41 4.60 8.76 -34.47 -0.30 4.30 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.04 0.59 5.80 -51.93 -0.30 0.29 16 39 H 0.08 1.21 6.47 -51.92 -0.34 0.87 16 40 H 0.03 0.53 6.14 -51.92 -0.32 0.21 16 41 H 0.05 1.10 5.15 -51.93 -0.27 0.84 16 42 H 0.05 1.01 6.71 -51.93 -0.35 0.66 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.18 1.88 8.06 -52.49 -0.42 1.45 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.17 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 386.20 15.07 5.82 5.82 Total: -1.00 -36.26 386.20 -7.63 -43.89 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -7.41 Total: 3.42 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 0.44 Total: -8.81 kcal Atomic # 7 Polarization: -68.59 SS G_CDS: 0.50 Total: -68.09 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -1.93 Total: -44.03 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.40 Total: 16.49 kcal Atomic # 16 Polarization: 51.97 SS G_CDS: -0.65 Total: 51.32 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.26 -7.63 -43.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921845233.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.260 kcal (2) G-P(sol) polarization free energy of solvation -36.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds