Wall clock time and date at job start Wed Apr 1 2020 03:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47046 * 2 1 4 4 C 1.52998 * 109.47606 * 120.00006 * 2 1 3 5 5 H 1.08994 * 109.47388 * 297.32050 * 4 2 1 6 6 N 1.46500 * 109.46879 * 57.31903 * 4 2 1 7 7 S 1.65600 * 120.00119 * 213.75464 * 6 4 2 8 8 O 1.42099 * 106.39985 * 312.66245 * 7 6 4 9 9 O 1.42096 * 106.40300 * 179.74327 * 7 6 4 10 10 N 1.65595 * 107.21484 * 66.20332 * 7 6 4 11 11 C 1.46503 * 119.99986 * 274.76242 * 10 7 6 12 12 C 1.46500 * 120.00333 * 94.76814 * 10 7 6 13 13 H 1.09002 * 109.46756 * 0.41660 * 12 10 7 14 14 C 1.52999 * 109.47304 * 240.41008 * 12 10 7 15 15 C 1.50701 * 109.47162 * 120.41264 * 12 10 7 16 16 H 1.08001 * 120.00293 * 5.43233 * 15 12 10 17 17 C 1.37875 * 119.99873 * 185.43602 * 15 12 10 18 18 N 1.31521 * 119.99828 * 196.80277 * 17 15 12 19 19 Si 1.86800 * 120.00332 * 16.80551 * 17 15 12 20 20 H 1.48497 * 109.47306 * 94.49234 * 19 17 15 21 21 H 1.48495 * 109.47169 * 214.49916 * 19 17 15 22 22 H 1.48505 * 109.47005 * 334.49535 * 19 17 15 23 23 C 1.50698 * 109.47213 * 177.31982 * 4 2 1 24 24 C 1.39877 * 126.04155 * 280.02470 * 23 4 2 25 25 N 1.30831 * 108.20052 * 179.97438 * 24 23 4 26 26 N 1.40077 * 108.20883 * 0.02562 * 25 24 23 27 27 C 1.46504 * 126.03766 * 179.97438 * 26 25 24 28 28 C 1.34943 * 107.92731 * 359.75637 * 26 25 24 29 29 H 1.09006 * 109.46895 * 301.78235 * 1 2 3 30 30 H 1.08992 * 109.47489 * 61.78585 * 1 2 3 31 31 H 1.08998 * 109.47287 * 181.78924 * 1 2 3 32 32 H 1.08999 * 109.47484 * 240.00597 * 2 1 3 33 33 H 1.08999 * 109.47516 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47293 * 300.00473 * 3 2 1 35 35 H 1.09000 * 109.47181 * 60.00278 * 3 2 1 36 36 H 0.97006 * 120.00044 * 33.75876 * 6 4 2 37 37 H 1.08998 * 109.47859 * 273.77723 * 11 10 7 38 38 H 1.09005 * 109.46766 * 33.77916 * 11 10 7 39 39 H 1.09007 * 109.47133 * 153.77097 * 11 10 7 40 40 H 1.09010 * 109.46576 * 59.02777 * 14 12 10 41 41 H 1.09000 * 109.47242 * 179.02031 * 14 12 10 42 42 H 1.08992 * 109.47496 * 299.02747 * 14 12 10 43 43 H 0.96998 * 119.99470 * 179.97438 * 18 17 15 44 44 H 1.07996 * 125.89743 * 0.02562 * 24 23 4 45 45 H 1.09005 * 109.46965 * 89.97436 * 27 26 25 46 46 H 1.08999 * 109.47377 * 209.97278 * 27 26 25 47 47 H 1.08996 * 109.47234 * 329.97828 * 27 26 25 48 48 H 1.08008 * 126.13175 * 180.24283 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7165 -0.1805 2.1385 6 7 1.4997 -2.0825 1.2819 7 16 1.1391 -2.7956 2.7324 8 8 2.2600 -2.5751 3.5775 9 8 0.6369 -4.0899 2.4293 10 7 -0.1201 -1.9488 3.3952 11 6 0.1431 -0.7437 4.1857 12 6 -1.4974 -2.4046 3.1912 13 1 -1.4939 -3.3133 2.5892 14 6 -2.2930 -1.3163 2.4676 15 6 -2.1353 -2.6891 4.5266 16 1 -1.6032 -2.4622 5.4386 17 6 -3.3983 -3.2392 4.5840 18 7 -4.0884 -3.1863 5.7023 19 14 -4.1293 -4.0598 3.0734 20 1 -3.8647 -5.5201 3.1265 21 1 -5.5949 -3.8230 3.0419 22 1 -3.5092 -3.4886 1.8509 23 6 3.5456 -0.7790 1.2163 24 6 4.3186 -1.6869 0.4851 25 7 5.5802 -1.4237 0.7103 26 7 5.6501 -0.3388 1.5936 27 6 6.8763 0.2775 2.1065 28 6 4.3886 0.0416 1.8850 29 1 -0.3633 0.5413 0.8736 30 1 -0.3634 0.4858 -0.9055 31 1 -0.3634 -1.0271 0.0321 32 1 1.8933 -0.5137 -0.8900 33 1 3.1299 1.4427 -0.0005 34 1 1.6765 1.9565 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.3532 -2.5663 0.4539 37 1 0.3379 -1.0236 5.2210 38 1 1.0119 -0.2255 3.7797 39 1 -0.7247 -0.0853 4.1444 40 1 -1.8216 -1.0983 1.5092 41 1 -3.3130 -1.6623 2.3004 42 1 -2.3110 -0.4131 3.0775 43 1 -4.9771 -3.5730 5.7425 44 1 3.9394 -2.4694 -0.1554 45 1 7.1880 1.0787 1.4362 46 1 6.6895 0.6866 3.0994 47 1 7.6635 -0.4740 2.1652 48 1 4.1028 0.8539 2.5369 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921845233.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:29 Heat of formation + Delta-G solvation = -21.764246 kcal Electronic energy + Delta-G solvation = -30561.992060 eV Core-core repulsion = 26586.842509 eV Total energy + Delta-G solvation = -3975.149551 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.15466 -38.58439 -38.25489 -37.83790 -36.82724 -34.49150 -34.05740 -33.61861 -31.65912 -31.26071 -28.12971 -27.61278 -27.17591 -26.91449 -25.67606 -22.65444 -22.14788 -21.58095 -20.78136 -20.14580 -19.00155 -18.66609 -18.25479 -17.71759 -17.33624 -16.68117 -16.25650 -15.96946 -15.59012 -15.27102 -15.14956 -14.89861 -14.76412 -14.50630 -14.22544 -14.17299 -13.78398 -13.58621 -13.51643 -13.38642 -13.35053 -13.22563 -13.12428 -13.00896 -12.90658 -12.84504 -12.75269 -12.65735 -12.19440 -12.09075 -11.85775 -11.73505 -11.69149 -11.44927 -11.38384 -11.25154 -10.58269 -10.46996 -10.28603 -9.69563 -9.22504 -8.29247 -6.26732 -0.31151 1.02377 1.34304 1.43626 1.49020 1.76221 1.84178 2.13287 2.36734 2.70198 3.06768 3.45130 3.67237 3.88037 4.02546 4.04101 4.19398 4.19738 4.35966 4.40781 4.48254 4.60006 4.67130 4.68803 4.72413 4.74931 4.85485 4.85743 4.92701 4.95971 5.00709 5.02338 5.16331 5.18656 5.21579 5.34233 5.38405 5.41362 5.56157 5.63183 5.64420 5.72768 5.73626 5.94162 6.19828 6.24381 6.40173 6.75777 6.79117 7.35601 8.87338 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018284 B = 0.003778 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.058592 B = 7410.009000 C = 7865.809386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.083 4.083 3 C -0.139 4.139 4 C 0.238 3.762 5 H 0.091 0.909 6 N -1.105 6.105 7 S 2.794 3.206 8 O -1.005 7.005 9 O -1.021 7.021 10 N -0.989 5.989 11 C 0.104 3.896 12 C 0.245 3.755 13 H 0.041 0.959 14 C -0.151 4.151 15 C -0.531 4.531 16 H 0.040 0.960 17 C 0.026 3.974 18 N -0.935 5.935 19 Si 0.910 3.090 20 H -0.288 1.288 21 H -0.278 1.278 22 H -0.220 1.220 23 C -0.256 4.256 24 C 0.050 3.950 25 N -0.337 5.337 26 N -0.380 5.380 27 C 0.093 3.907 28 C 0.069 3.931 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.423 0.577 37 H 0.030 0.970 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.044 0.956 42 H 0.060 0.940 43 H 0.266 0.734 44 H 0.186 0.814 45 H 0.091 0.909 46 H 0.110 0.890 47 H 0.084 0.916 48 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.100 14.477 -14.297 25.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.104 4.104 3 C -0.197 4.197 4 C 0.130 3.870 5 H 0.109 0.891 6 N -0.867 5.867 7 S 2.803 3.197 8 O -0.988 6.988 9 O -1.005 7.005 10 N -0.830 5.830 11 C -0.042 4.042 12 C 0.139 3.861 13 H 0.059 0.941 14 C -0.210 4.210 15 C -0.570 4.570 16 H 0.059 0.941 17 C -0.173 4.173 18 N -0.574 5.574 19 Si 0.734 3.266 20 H -0.214 1.214 21 H -0.203 1.203 22 H -0.142 1.142 23 C -0.270 4.270 24 C -0.136 4.136 25 N -0.159 5.159 26 N -0.163 5.163 27 C -0.047 4.047 28 C -0.079 4.079 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.259 0.741 37 H 0.049 0.951 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.203 0.797 45 H 0.110 0.890 46 H 0.128 0.872 47 H 0.103 0.897 48 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 17.794 13.521 -13.827 26.280 hybrid contribution -1.660 -0.772 -0.088 1.832 sum 16.135 12.749 -13.915 24.830 Atomic orbital electron populations 1.21965 0.94515 1.02114 1.02537 1.21275 0.95820 0.96906 0.96364 1.21763 1.00975 0.94310 1.02667 1.19163 0.86673 0.80629 1.00536 0.89081 1.55799 1.79634 1.26575 1.24673 1.01301 0.72428 0.72327 0.73663 1.93534 1.51826 1.86279 1.67198 1.93531 1.81285 1.40210 1.85443 1.57359 1.19609 1.40886 1.65178 1.21422 1.02065 0.86136 0.94549 1.18812 0.78455 0.93934 0.94909 0.94080 1.22375 0.99257 0.99598 0.99749 1.21425 1.00671 1.41998 0.92918 0.94122 1.25621 0.96960 0.96043 0.98706 1.70098 1.12123 1.45524 1.29681 0.86403 0.78205 0.79203 0.82831 1.21426 1.20303 1.14247 1.20466 0.96775 1.02208 1.07508 1.23866 0.90012 0.99837 0.99879 1.77250 1.21072 1.05211 1.12402 1.48759 1.06982 1.24732 1.35777 1.22168 0.83106 0.98549 1.00883 1.22766 0.83980 1.01026 1.00104 0.92154 0.91554 0.92943 0.90259 0.92766 0.91795 0.91728 0.74105 0.95114 0.89721 0.89750 0.91060 0.93709 0.92056 0.92509 0.79696 0.89041 0.87165 0.89685 0.77990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 8.25 71.98 0.59 -1.89 16 2 C -0.08 -1.26 2.59 -10.79 -0.03 -1.28 16 3 C -0.14 -1.70 8.95 71.98 0.64 -1.05 16 4 C 0.24 4.72 2.18 44.24 0.10 4.82 16 5 H 0.09 1.74 5.61 -2.39 -0.01 1.72 16 6 N -1.11 -27.20 4.39 -172.53 -0.76 -27.96 16 7 S 2.79 102.11 6.03 -56.49 -0.34 101.77 16 8 O -1.01 -40.56 17.18 -128.00 -2.20 -42.76 16 9 O -1.02 -45.62 16.57 -128.00 -2.12 -47.74 16 10 N -0.99 -37.27 3.12 -520.42 -1.62 -38.89 16 11 C 0.10 3.30 9.28 127.77 1.19 4.48 16 12 C 0.24 10.79 2.18 44.25 0.10 10.89 16 13 H 0.04 1.94 5.28 -2.39 -0.01 1.92 16 14 C -0.15 -5.46 8.57 71.98 0.62 -4.84 16 15 C -0.53 -29.33 8.82 25.60 0.23 -29.11 16 16 H 0.04 2.50 7.78 -2.91 -0.02 2.48 16 17 C 0.03 1.47 5.34 84.65 0.45 1.92 16 18 N -0.93 -57.05 13.96 21.45 0.30 -56.75 16 19 Si 0.91 42.74 25.88 68.60 1.78 44.52 16 20 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 22 H -0.22 -9.06 5.53 99.48 0.55 -8.51 16 23 C -0.26 -5.52 4.20 -20.14 -0.08 -5.60 16 24 C 0.05 1.19 11.66 85.24 0.99 2.19 16 25 N -0.34 -8.79 12.57 -57.02 -0.72 -9.51 16 26 N -0.38 -7.72 4.01 -369.55 -1.48 -9.21 16 27 C 0.09 1.02 11.47 127.77 1.47 2.49 16 28 C 0.07 1.30 10.70 83.54 0.89 2.19 16 29 H 0.06 1.00 7.94 -2.38 -0.02 0.98 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.05 0.97 6.55 -2.39 -0.02 0.95 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.05 0.70 6.78 -2.39 -0.02 0.69 16 34 H 0.06 0.69 8.14 -2.38 -0.02 0.68 16 35 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 36 H 0.42 8.63 8.76 -96.74 -0.85 7.78 16 37 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.08 1.99 5.80 -2.38 -0.01 1.97 16 39 H 0.08 2.53 6.47 -2.38 -0.02 2.52 16 40 H 0.07 2.02 6.14 -2.38 -0.01 2.01 16 41 H 0.04 1.70 5.15 -2.39 -0.01 1.69 16 42 H 0.06 2.12 6.71 -2.39 -0.02 2.10 16 43 H 0.27 15.23 8.31 -92.71 -0.77 14.45 16 44 H 0.19 3.78 8.06 -2.91 -0.02 3.75 16 45 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 46 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.20 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -80.92 386.20 -0.04 -80.96 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -0.03 Total: 20.37 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: 7.15 Total: -14.80 kcal Atomic # 7 Polarization: -138.03 SS G_CDS: -4.28 Total: -142.31 kcal Atomic # 8 Polarization: -86.18 SS G_CDS: -4.32 Total: -90.50 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 1.78 Total: 44.52 kcal Atomic # 16 Polarization: 102.11 SS G_CDS: -0.34 Total: 101.77 kcal Total: -80.92 -0.04 -80.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921845233.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.194 kcal (2) G-P(sol) polarization free energy of solvation -80.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds