Wall clock time and date at job start Wed Apr 1 2020 03:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47292 * 2 1 4 4 C 1.52995 * 109.47209 * 120.00198 * 2 1 3 5 5 H 1.09002 * 109.47594 * 299.35499 * 4 2 1 6 6 N 1.46499 * 109.47453 * 59.35143 * 4 2 1 7 7 S 1.65599 * 120.00535 * 236.62937 * 6 4 2 8 8 O 1.42104 * 106.40093 * 49.78151 * 7 6 4 9 9 O 1.42100 * 106.40727 * 182.70721 * 7 6 4 10 10 N 1.65604 * 107.21314 * 296.24534 * 7 6 4 11 11 C 1.46503 * 120.00094 * 95.33538 * 10 7 6 12 12 C 1.46497 * 119.99934 * 275.32315 * 10 7 6 13 13 H 1.09000 * 109.47282 * 2.37652 * 12 10 7 14 14 C 1.53005 * 109.46728 * 122.36891 * 12 10 7 15 15 C 1.50699 * 109.47597 * 242.36779 * 12 10 7 16 16 H 1.08001 * 119.99902 * 0.02562 * 15 12 10 17 17 C 1.37873 * 119.99779 * 180.02562 * 15 12 10 18 18 N 1.31507 * 120.00452 * 0.02562 * 17 15 12 19 19 Si 1.86806 * 119.99792 * 180.02562 * 17 15 12 20 20 H 1.48507 * 109.47128 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47059 * 120.00017 * 19 17 15 22 22 H 1.48496 * 109.47267 * 240.00097 * 19 17 15 23 23 C 1.50703 * 109.47492 * 179.35085 * 4 2 1 24 24 C 1.39873 * 126.04162 * 280.02916 * 23 4 2 25 25 N 1.30831 * 108.20099 * 179.97438 * 24 23 4 26 26 N 1.40084 * 108.21011 * 359.97438 * 25 24 23 27 27 C 1.46499 * 126.04087 * 179.97438 * 26 25 24 28 28 C 1.34956 * 107.92207 * 359.76079 * 26 25 24 29 29 H 1.09005 * 109.47241 * 299.77183 * 1 2 3 30 30 H 1.08999 * 109.47266 * 59.77348 * 1 2 3 31 31 H 1.09002 * 109.47473 * 179.77740 * 1 2 3 32 32 H 1.09004 * 109.47188 * 239.99904 * 2 1 3 33 33 H 1.08999 * 109.47052 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46832 * 300.00399 * 3 2 1 35 35 H 1.09004 * 109.47082 * 59.99840 * 3 2 1 36 36 H 0.97006 * 119.99624 * 56.34602 * 6 4 2 37 37 H 1.08996 * 109.47407 * 89.99275 * 11 10 7 38 38 H 1.08997 * 109.46616 * 210.00039 * 11 10 7 39 39 H 1.09005 * 109.46697 * 329.99045 * 11 10 7 40 40 H 1.09000 * 109.47322 * 65.73951 * 14 12 10 41 41 H 1.08999 * 109.47049 * 185.74355 * 14 12 10 42 42 H 1.09004 * 109.47429 * 305.73901 * 14 12 10 43 43 H 0.97004 * 120.00400 * 179.97438 * 18 17 15 44 44 H 1.07999 * 125.89401 * 359.97438 * 24 23 4 45 45 H 1.09004 * 109.47059 * 89.97859 * 27 26 25 46 46 H 1.08995 * 109.47249 * 209.97599 * 27 26 25 47 47 H 1.08994 * 109.47074 * 329.98115 * 27 26 25 48 48 H 1.07998 * 126.12616 * 180.24401 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6861 -0.2009 2.1392 6 7 1.5389 -2.0979 1.2570 7 16 0.6586 -2.6514 2.5458 8 8 -0.3542 -1.6838 2.7852 9 8 0.3798 -4.0199 2.2834 10 7 1.6548 -2.6226 3.8684 11 6 1.6369 -1.4711 4.7740 12 6 2.5539 -3.7486 4.1329 13 1 2.4578 -4.4854 3.3354 14 6 3.9977 -3.2455 4.1911 15 6 2.1897 -4.3836 5.4502 16 1 1.3702 -3.9882 6.0320 17 6 2.9028 -5.4692 5.9126 18 7 3.9010 -5.9504 5.2044 19 14 2.4509 -6.2568 7.5451 20 1 1.2991 -5.5336 8.1416 21 1 2.0815 -7.6780 7.3236 22 1 3.6124 -6.1853 8.4675 23 6 3.5469 -0.7353 1.2412 24 6 4.3579 -1.6116 0.5127 25 7 5.6075 -1.3149 0.7623 26 7 5.6312 -0.2385 1.6585 27 6 6.8303 0.4068 2.1989 28 6 4.3544 0.1022 1.9323 29 1 -0.3634 0.5103 0.8921 30 1 -0.3634 0.5173 -0.8879 31 1 -0.3634 -1.0276 -0.0040 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.7194 -2.6840 0.5054 37 1 0.9003 -1.6383 5.5598 38 1 2.6230 -1.3452 5.2210 39 1 1.3741 -0.5731 4.2148 40 1 4.1185 -2.5866 5.0510 41 1 4.6747 -4.0945 4.2859 42 1 4.2285 -2.6970 3.2778 43 1 4.4029 -6.7140 5.5299 44 1 4.0123 -2.3973 -0.1426 45 1 7.1300 1.2241 1.5429 46 1 6.6151 0.7990 3.1928 47 1 7.6378 -0.3224 2.2630 48 1 4.0345 0.8986 2.5879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921845234.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:34 Heat of formation + Delta-G solvation = -25.424395 kcal Electronic energy + Delta-G solvation = -30890.377721 eV Core-core repulsion = 26915.069454 eV Total energy + Delta-G solvation = -3975.308267 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.11105 -38.57429 -38.05497 -37.80388 -36.79742 -34.50717 -34.03594 -33.58716 -31.23233 -30.88491 -28.07681 -27.54991 -27.29126 -26.92547 -25.65315 -22.62093 -22.19090 -21.52774 -20.73107 -20.13231 -18.73512 -18.51605 -18.21446 -17.76412 -17.02612 -16.70922 -16.25279 -16.03078 -15.50990 -15.19039 -15.13884 -14.93838 -14.77854 -14.49464 -14.11167 -13.79885 -13.62720 -13.40321 -13.35500 -13.34058 -13.18683 -13.13286 -13.07014 -12.96637 -12.90647 -12.77951 -12.68512 -12.55619 -12.21882 -12.15763 -12.13331 -11.87358 -11.75242 -11.64261 -11.31022 -11.12455 -10.52258 -10.42223 -10.21888 -9.62185 -9.17211 -8.10933 -6.24112 -0.22814 1.09240 1.39782 1.43050 1.53490 1.80905 1.89229 2.18209 2.43817 2.73796 3.17422 3.53320 3.68067 3.97279 4.06941 4.11036 4.17582 4.21433 4.39000 4.42479 4.52302 4.65546 4.71823 4.73230 4.76986 4.85753 4.89598 4.95691 4.98867 5.05646 5.06874 5.10596 5.17486 5.19402 5.22628 5.33553 5.36421 5.57383 5.62287 5.64638 5.74094 5.77768 5.90135 6.09375 6.25134 6.28366 6.31353 6.84147 6.86708 7.44922 8.93231 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011523 B = 0.004909 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.347376 B = 5702.046954 C = 7301.379978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 C -0.137 4.137 4 C 0.242 3.758 5 H 0.091 0.909 6 N -1.109 6.109 7 S 2.793 3.207 8 O -1.000 7.000 9 O -1.025 7.025 10 N -0.994 5.994 11 C 0.104 3.896 12 C 0.284 3.716 13 H 0.015 0.985 14 C -0.115 4.115 15 C -0.536 4.536 16 H 0.055 0.945 17 C 0.017 3.983 18 N -0.915 5.915 19 Si 0.953 3.047 20 H -0.269 1.269 21 H -0.285 1.285 22 H -0.275 1.275 23 C -0.249 4.249 24 C 0.053 3.947 25 N -0.334 5.334 26 N -0.376 5.376 27 C 0.094 3.906 28 C 0.072 3.928 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.038 0.962 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.419 0.581 37 H 0.039 0.961 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.036 0.964 41 H 0.053 0.947 42 H 0.031 0.969 43 H 0.263 0.737 44 H 0.180 0.820 45 H 0.091 0.909 46 H 0.110 0.890 47 H 0.080 0.920 48 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.681 19.219 -8.787 21.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.195 4.195 4 C 0.134 3.866 5 H 0.109 0.891 6 N -0.869 5.869 7 S 2.803 3.197 8 O -0.983 6.983 9 O -1.009 7.009 10 N -0.836 5.836 11 C -0.041 4.041 12 C 0.180 3.820 13 H 0.033 0.967 14 C -0.174 4.174 15 C -0.576 4.576 16 H 0.073 0.927 17 C -0.182 4.182 18 N -0.554 5.554 19 Si 0.779 3.221 20 H -0.193 1.193 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.262 4.262 24 C -0.133 4.133 25 N -0.156 5.156 26 N -0.158 5.158 27 C -0.046 4.046 28 C -0.076 4.076 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.253 0.747 37 H 0.057 0.943 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.072 0.928 44 H 0.197 0.803 45 H 0.109 0.891 46 H 0.128 0.872 47 H 0.099 0.901 48 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 3.217 18.710 -8.795 20.923 hybrid contribution -0.431 -1.185 0.722 1.453 sum 2.787 17.525 -8.073 19.495 Atomic orbital electron populations 1.21855 0.95189 1.01307 1.02281 1.21360 0.95383 0.97205 0.97102 1.21748 1.01115 0.94089 1.02553 1.19044 0.87584 0.80075 0.99858 0.89086 1.55833 1.73535 1.21662 1.35852 1.01312 0.73659 0.71759 0.73006 1.93528 1.55942 1.63054 1.85756 1.93547 1.84824 1.36922 1.85618 1.57513 1.58161 1.27767 1.40141 1.21349 1.02774 0.86215 0.93800 1.18210 0.86685 0.81963 0.95171 0.96675 1.21706 0.98168 0.99637 0.97931 1.21710 1.15821 1.14209 1.05822 0.92674 1.25631 0.94957 0.97127 1.00534 1.70012 1.21124 1.25013 1.39267 0.85585 0.78336 0.78130 0.80049 1.19331 1.21100 1.20007 1.20228 0.96090 1.02475 1.07445 1.23751 0.89959 0.99664 0.99921 1.77303 1.21659 1.04981 1.11659 1.48702 1.06760 1.25226 1.35118 1.22129 0.84246 0.97822 1.00378 1.22708 0.83755 1.00924 1.00227 0.92714 0.91241 0.94295 0.90399 0.92470 0.91777 0.91863 0.74672 0.94261 0.90591 0.89938 0.94462 0.92778 0.95008 0.92822 0.80336 0.89055 0.87169 0.90110 0.77962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.03 71.98 0.65 -2.41 16 2 C -0.09 -1.67 2.68 -10.80 -0.03 -1.70 16 3 C -0.14 -1.98 8.91 71.98 0.64 -1.34 16 4 C 0.24 5.48 2.36 44.24 0.10 5.58 16 5 H 0.09 2.01 6.63 -2.39 -0.02 1.99 16 6 N -1.11 -31.32 4.41 -172.52 -0.76 -32.08 16 7 S 2.79 107.43 5.94 -56.49 -0.34 107.10 16 8 O -1.00 -38.55 16.62 -128.00 -2.13 -40.68 16 9 O -1.02 -49.51 16.91 -128.00 -2.16 -51.68 16 10 N -0.99 -40.23 3.12 -520.44 -1.62 -41.85 16 11 C 0.10 3.45 9.66 127.77 1.23 4.68 16 12 C 0.28 14.06 2.58 44.25 0.11 14.18 16 13 H 0.02 0.87 7.11 -2.39 -0.02 0.86 16 14 C -0.11 -5.24 8.68 71.98 0.62 -4.62 16 15 C -0.54 -29.44 8.40 25.60 0.22 -29.22 16 16 H 0.06 3.02 7.72 -2.91 -0.02 3.00 16 17 C 0.02 0.95 5.30 84.65 0.45 1.40 16 18 N -0.91 -52.46 11.38 21.44 0.24 -52.21 16 19 Si 0.95 43.99 29.54 68.60 2.03 46.02 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 21 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 23 C -0.25 -5.70 4.13 -20.14 -0.08 -5.78 16 24 C 0.05 1.40 11.61 85.24 0.99 2.39 16 25 N -0.33 -9.54 12.57 -57.02 -0.72 -10.25 16 26 N -0.38 -8.25 4.01 -369.57 -1.48 -9.73 16 27 C 0.09 1.27 11.47 127.77 1.47 2.73 16 28 C 0.07 1.40 10.66 83.54 0.89 2.29 16 29 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.04 0.92 7.59 -2.39 -0.02 0.90 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 0.85 6.71 -2.39 -0.02 0.83 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.42 10.64 8.89 -96.74 -0.86 9.78 16 37 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.08 2.40 6.43 -2.39 -0.02 2.38 16 39 H 0.08 2.13 6.64 -2.38 -0.02 2.11 16 40 H 0.04 1.60 6.85 -2.39 -0.02 1.58 16 41 H 0.05 2.82 6.24 -2.39 -0.01 2.81 16 42 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 44 H 0.18 4.30 8.06 -2.91 -0.02 4.28 16 45 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 46 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.20 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -75.62 397.95 0.42 -75.19 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 0.10 Total: 21.99 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: 7.27 Total: -11.81 kcal Atomic # 7 Polarization: -141.78 SS G_CDS: -4.34 Total: -146.13 kcal Atomic # 8 Polarization: -88.07 SS G_CDS: -4.29 Total: -92.36 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: 107.43 SS G_CDS: -0.34 Total: 107.10 kcal Total: -75.62 0.42 -75.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921845234.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.770 kcal (2) G-P(sol) polarization free energy of solvation -75.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds