Wall clock time and date at job start Wed Apr 1 2020 04:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46509 * 120.00101 * 2 1 4 4 S 1.65604 * 120.00271 * 179.97438 * 2 1 3 5 5 O 1.42095 * 106.39789 * 341.22974 * 4 2 1 6 6 O 1.42098 * 106.40239 * 208.31359 * 4 2 1 7 7 N 1.65595 * 107.22027 * 94.77038 * 4 2 1 8 8 C 1.44678 * 118.54516 * 264.40914 * 7 4 2 9 9 C 1.54946 * 109.52649 * 269.05339 * 8 7 4 10 10 C 1.47549 * 109.72945 * 290.52565 * 9 8 7 11 11 N 1.46260 * 114.37423 * 62.22340 * 10 9 8 12 12 C 1.46896 * 111.00309 * 148.55204 * 11 10 9 13 13 C 1.53003 * 109.47422 * 66.03876 * 12 11 10 14 14 H 1.08999 * 109.47402 * 55.00026 * 13 12 11 15 15 C 1.47205 * 109.47175 * 295.00360 * 13 12 11 16 16 N 8.37622 * 110.65691 * 220.96304 * 2 1 3 17 17 C 1.52995 * 109.47598 * 175.00642 * 13 12 11 18 18 C 1.50696 * 109.47441 * 185.00205 * 17 13 12 19 19 H 1.07995 * 119.99874 * 359.97438 * 18 17 13 20 20 C 1.37873 * 120.00084 * 179.72281 * 18 17 13 21 21 N 1.31516 * 120.00171 * 0.26958 * 20 18 17 22 22 Si 1.86804 * 120.00371 * 180.27432 * 20 18 17 23 23 H 1.48503 * 109.46982 * 59.99299 * 22 20 18 24 24 H 1.48492 * 109.47440 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46846 * 300.00034 * 22 20 18 26 26 C 1.44763 * 110.63629 * 272.24283 * 11 10 9 27 27 C 1.47775 * 118.54947 * 84.38562 * 7 4 2 28 28 H 1.08998 * 109.47485 * 270.00195 * 1 2 3 29 29 H 1.09006 * 109.47055 * 30.00353 * 1 2 3 30 30 H 1.08997 * 109.46899 * 149.99591 * 1 2 3 31 31 H 1.09003 * 109.47022 * 244.88057 * 3 2 1 32 32 H 1.08993 * 109.46706 * 4.88294 * 3 2 1 33 33 H 1.09000 * 109.47048 * 124.87976 * 3 2 1 34 34 H 1.09001 * 109.46208 * 149.03671 * 8 7 4 35 35 H 1.09002 * 109.45579 * 29.06454 * 8 7 4 36 36 H 1.08994 * 109.43022 * 170.44255 * 9 8 7 37 37 H 1.09001 * 109.42325 * 50.60079 * 9 8 7 38 38 H 1.08994 * 108.50356 * 300.94696 * 10 9 8 39 39 H 1.08999 * 108.37401 * 183.39044 * 10 9 8 40 40 H 1.09001 * 109.46864 * 306.04449 * 12 11 10 41 41 H 1.09000 * 109.47340 * 186.03980 * 12 11 10 42 42 H 1.09003 * 109.47448 * 64.99355 * 17 13 12 43 43 H 1.09003 * 109.46657 * 304.99921 * 17 13 12 44 44 H 0.97005 * 120.00376 * 179.97438 * 21 20 18 45 45 H 1.09005 * 109.44033 * 214.23091 * 26 11 10 46 46 H 1.09003 * 109.43839 * 334.10089 * 26 11 10 47 47 H 1.09002 * 109.06494 * 258.67051 * 27 7 4 48 48 H 1.08999 * 109.06414 * 17.59993 * 27 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.3759 -2.4267 0.4397 6 8 3.5329 -1.1813 0.6471 7 7 2.6521 -1.7936 -1.5754 8 6 1.7669 -2.6780 -2.3018 9 6 2.2499 -4.1413 -2.1403 10 6 3.5174 -4.3311 -2.8713 11 7 4.6244 -3.5089 -2.3837 12 6 5.9102 -4.1955 -2.5656 13 6 6.2004 -4.3476 -4.0601 14 1 6.1583 -3.3697 -4.5398 15 6 5.1954 -5.2355 -4.6673 16 7 4.4198 -5.9185 -5.1382 17 6 7.5940 -4.9495 -4.2505 18 6 7.9293 -4.9857 -5.7192 19 1 7.2192 -4.6166 -6.4444 20 6 9.1447 -5.4851 -6.1368 21 7 10.0093 -5.9348 -5.2537 22 14 9.5635 -5.5228 -7.9569 23 1 9.5380 -4.1407 -8.4994 24 1 10.9186 -6.1015 -8.1411 25 1 8.5669 -6.3556 -8.6769 26 6 4.6285 -2.2181 -3.0392 27 6 3.8621 -1.1965 -2.1780 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8899 -0.5139 31 1 2.7570 1.3653 -0.9305 32 1 1.4924 2.0953 0.0875 33 1 2.8881 1.2896 0.8430 34 1 1.7709 -2.4087 -3.3580 35 1 0.7553 -2.5837 -1.9068 36 1 1.4955 -4.8184 -2.5407 37 1 2.4052 -4.3572 -1.0832 38 1 3.3490 -4.0966 -3.9223 39 1 3.8051 -5.3795 -2.7939 40 1 5.8643 -5.1812 -2.1023 41 1 6.7033 -3.6113 -2.0991 42 1 7.6101 -5.9628 -3.8490 43 1 8.3283 -4.3389 -3.7251 44 1 10.8642 -6.2866 -5.5475 45 1 5.6568 -1.8818 -3.1717 46 1 4.1473 -2.3045 -4.0134 47 1 3.5694 -0.3526 -2.8027 48 1 4.5165 -0.8392 -1.3829 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930524269.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:46 Heat of formation + Delta-G solvation = -53.441038 kcal Electronic energy + Delta-G solvation = -29762.957727 eV Core-core repulsion = 25786.434567 eV Total energy + Delta-G solvation = -3976.523160 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.84903 -38.42831 -38.11523 -37.02475 -36.83631 -36.27967 -35.44192 -33.92749 -33.11951 -29.65175 -28.93026 -27.62275 -26.93054 -25.51723 -24.82108 -23.77767 -22.52856 -21.29369 -19.90059 -18.82753 -18.51990 -18.44524 -18.18034 -17.51222 -16.87788 -16.62712 -16.39532 -16.03790 -15.60068 -15.36518 -15.21077 -15.12483 -14.60944 -14.50433 -14.19527 -14.11564 -14.06047 -13.94343 -13.68846 -13.48713 -13.32568 -13.29184 -13.17235 -13.09932 -12.92812 -12.76101 -12.60261 -12.51791 -12.47957 -12.44888 -12.16874 -12.03689 -11.92890 -11.77218 -11.61205 -11.44279 -11.30279 -10.56616 -10.05938 -9.86495 -9.21294 -8.19975 -6.29547 -0.42866 1.39377 1.41017 1.47998 1.91452 1.93126 1.95412 2.39745 2.51386 2.93058 3.14266 3.22568 3.31719 3.74967 3.78898 3.95770 4.07162 4.09191 4.16026 4.23470 4.39190 4.49323 4.51535 4.57387 4.57873 4.64974 4.72751 4.77636 4.79751 4.82688 4.89436 4.93254 4.97733 4.99962 5.02035 5.07166 5.12058 5.29206 5.30974 5.44711 5.53064 5.58939 5.77079 5.84389 6.09981 6.18240 6.25984 6.72263 6.85212 7.39259 8.89956 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.023911 B = 0.002624 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.728265 B =10669.123643 C =11028.989448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.016 6.016 3 C 0.080 3.920 4 S 2.790 3.210 5 O -1.005 7.005 6 O -1.004 7.004 7 N -0.984 5.984 8 C 0.132 3.868 9 C -0.137 4.137 10 C 0.058 3.942 11 N -0.533 5.533 12 C 0.071 3.929 13 C -0.019 4.019 14 H 0.122 0.878 15 C 0.251 3.749 16 N -0.501 5.501 17 C 0.040 3.960 18 C -0.539 4.539 19 H 0.053 0.947 20 C 0.011 3.989 21 N -0.923 5.923 22 Si 0.948 3.052 23 H -0.261 1.261 24 H -0.283 1.283 25 H -0.282 1.282 26 C 0.035 3.965 27 C 0.123 3.877 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.057 0.943 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.035 0.965 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.115 0.885 42 H -0.003 1.003 43 H 0.037 0.963 44 H 0.264 0.736 45 H 0.103 0.897 46 H 0.052 0.948 47 H 0.098 0.902 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.969 18.824 9.203 28.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.859 5.859 3 C -0.065 4.065 4 S 2.799 3.201 5 O -0.989 6.989 6 O -0.987 6.987 7 N -0.824 5.824 8 C 0.005 3.995 9 C -0.177 4.177 10 C -0.070 4.070 11 N -0.255 5.255 12 C -0.058 4.058 13 C -0.042 4.042 14 H 0.140 0.860 15 C -0.065 4.065 16 N -0.178 5.178 17 C 0.002 3.998 18 C -0.577 4.577 19 H 0.071 0.929 20 C -0.188 4.188 21 N -0.563 5.563 22 Si 0.773 3.227 23 H -0.185 1.185 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.095 4.095 27 C -0.002 4.002 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.089 0.911 41 H 0.133 0.867 42 H 0.015 0.985 43 H 0.056 0.944 44 H 0.073 0.927 45 H 0.121 0.879 46 H 0.070 0.930 47 H 0.116 0.884 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -19.833 17.321 9.765 28.084 hybrid contribution 0.999 -0.565 -1.934 2.249 sum -18.834 16.756 7.831 26.397 Atomic orbital electron populations 1.21708 0.77110 1.04407 1.02648 1.57685 1.16135 1.22144 1.89920 1.21775 0.97371 0.84962 1.02393 1.01638 0.72234 0.72764 0.73440 1.93545 1.65752 1.58768 1.80833 1.93545 1.45202 1.85941 1.74048 1.57218 1.33889 1.59136 1.32175 1.21262 0.92138 0.87428 0.98634 1.21457 0.96537 0.98718 1.00951 1.21141 0.92429 0.96482 0.96913 1.61119 1.02200 1.03848 1.58344 1.22490 0.91833 1.00456 0.90981 1.19983 0.90769 0.96383 0.97089 0.86001 1.29455 0.91973 0.93281 0.91770 1.81039 1.14259 1.11286 1.11255 1.18945 0.89534 0.95508 0.95862 1.21506 1.01252 1.41323 0.93660 0.92859 1.25722 0.96574 0.95017 1.01461 1.70029 1.08593 1.42327 1.35332 0.85763 0.77081 0.78967 0.80848 1.18541 1.20837 1.20817 1.22518 1.02283 0.89175 0.95523 1.22016 0.84618 0.94919 0.98633 0.92588 0.88176 0.91183 0.90939 0.87721 0.92439 0.88903 0.89131 0.89501 0.92570 0.94647 0.93925 0.91107 0.86675 0.98480 0.94427 0.92701 0.87928 0.92969 0.88363 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.87 10.26 127.77 1.31 2.18 16 2 N -1.02 -14.60 3.64 -562.69 -2.05 -16.65 16 3 C 0.08 0.78 10.42 127.77 1.33 2.11 16 4 S 2.79 62.41 5.96 -56.49 -0.34 62.08 16 5 O -1.01 -27.94 15.53 -128.00 -1.99 -29.93 16 6 O -1.00 -28.84 15.78 -128.00 -2.02 -30.86 16 7 N -0.98 -18.47 2.89 -511.44 -1.48 -19.95 16 8 C 0.13 2.37 5.30 87.38 0.46 2.83 16 9 C -0.14 -3.24 6.02 29.56 0.18 -3.06 16 10 C 0.06 1.59 3.19 84.72 0.27 1.86 16 11 N -0.53 -13.76 4.37 -911.95 -3.99 -17.75 16 12 C 0.07 2.05 4.73 86.30 0.41 2.46 16 13 C -0.02 -0.65 2.00 -12.60 -0.03 -0.68 16 14 H 0.12 3.70 6.64 -2.39 -0.02 3.68 16 15 C 0.25 9.72 10.13 89.45 0.91 10.63 16 16 N -0.50 -20.96 17.69 20.00 0.35 -20.61 16 17 C 0.04 1.83 4.42 29.85 0.13 1.96 16 18 C -0.54 -28.06 8.60 25.60 0.22 -27.84 16 19 H 0.05 2.72 7.59 -2.91 -0.02 2.70 16 20 C 0.01 0.62 5.46 84.65 0.46 1.08 16 21 N -0.92 -52.85 13.29 21.45 0.28 -52.56 16 22 Si 0.95 42.88 29.54 68.60 2.03 44.91 16 23 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 26 C 0.03 0.69 4.22 87.05 0.37 1.06 16 27 C 0.12 2.01 6.59 86.48 0.57 2.58 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.10 0.43 7.96 -2.38 -0.02 0.41 16 30 H 0.07 0.72 7.66 -2.39 -0.02 0.71 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.10 0.46 7.84 -2.39 -0.02 0.44 16 33 H 0.06 0.71 7.83 -2.39 -0.02 0.69 16 34 H 0.09 1.37 8.09 -2.39 -0.02 1.35 16 35 H 0.09 1.38 7.45 -2.39 -0.02 1.36 16 36 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.06 1.55 7.91 -2.39 -0.02 1.53 16 38 H 0.04 1.00 5.64 -2.39 -0.01 0.98 16 39 H 0.04 1.36 6.27 -2.39 -0.01 1.34 16 40 H 0.07 2.18 7.87 -2.39 -0.02 2.16 16 41 H 0.12 2.94 8.11 -2.39 -0.02 2.92 16 42 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 43 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 45 H 0.10 1.82 7.08 -2.38 -0.02 1.80 16 46 H 0.05 1.02 7.14 -2.39 -0.02 1.00 16 47 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.09 1.57 6.78 -2.39 -0.02 1.56 16 Total: -1.00 -73.39 386.39 -1.65 -75.04 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 0.95 Total: 9.12 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: 6.60 Total: -2.83 kcal Atomic # 7 Polarization: -120.64 SS G_CDS: -6.87 Total: -127.52 kcal Atomic # 8 Polarization: -56.78 SS G_CDS: -4.01 Total: -60.79 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: 62.41 SS G_CDS: -0.34 Total: 62.08 kcal Total: -73.39 -1.65 -75.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930524269.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.595 kcal (2) G-P(sol) polarization free energy of solvation -73.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds