Wall clock time and date at job start Wed Apr 1 2020 04:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99950 * 2 1 4 4 H 1.48498 * 109.47100 * 269.99242 * 3 2 1 5 5 H 1.48502 * 109.47277 * 29.99818 * 3 2 1 6 6 H 1.48508 * 109.47049 * 149.99534 * 3 2 1 7 7 C 1.38814 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00210 * 164.50497 * 7 2 1 9 9 N 1.36939 * 119.99808 * 344.49728 * 7 2 1 10 10 C 1.47606 * 118.64669 * 331.70838 * 9 7 2 11 11 C 1.53947 * 112.14290 * 222.11223 * 10 9 7 12 12 C 1.50884 * 110.09494 * 40.55750 * 11 10 9 13 13 C 1.52564 * 109.34835 * 268.11129 * 12 11 10 14 14 C 1.47095 * 114.32800 * 85.02975 * 13 12 11 15 15 C 1.44580 * 118.63825 * 151.68019 * 9 7 2 16 16 H 1.08997 * 109.45140 * 209.32205 * 15 9 7 17 17 C 1.53003 * 109.45301 * 329.26849 * 15 9 7 18 18 N 1.46497 * 109.46987 * 305.00300 * 17 15 9 19 19 C 1.34780 * 120.00153 * 179.97438 * 18 17 15 20 20 O 1.21625 * 119.99680 * 359.97438 * 19 18 17 21 21 C 1.47316 * 120.00176 * 180.02562 * 19 18 17 22 22 C 1.39006 * 120.90321 * 359.97438 * 21 19 18 23 23 C 1.39721 * 119.28579 * 180.02562 * 22 21 19 24 24 C 1.35249 * 121.08416 * 0.02562 * 23 22 21 25 25 N 1.35722 * 121.57380 * 359.97438 * 24 23 22 26 26 N 1.40204 * 134.09101 * 180.02562 * 25 24 23 27 27 N 1.29016 * 106.96199 * 179.97438 * 26 25 24 28 28 N 1.28588 * 110.78393 * 359.97438 * 27 26 25 29 29 C 1.32043 * 110.21830 * 0.02562 * 28 27 26 30 30 H 0.96999 * 120.00070 * 0.02562 * 1 2 3 31 31 H 1.08997 * 108.94236 * 342.79324 * 10 9 7 32 32 H 1.08994 * 108.94732 * 101.51271 * 10 9 7 33 33 H 1.09004 * 109.36317 * 160.74889 * 11 10 9 34 34 H 1.08998 * 109.36291 * 280.49439 * 11 10 9 35 35 H 1.09004 * 109.49028 * 28.07700 * 12 11 10 36 36 H 1.09001 * 109.48841 * 148.12466 * 12 11 10 37 37 H 1.08999 * 108.51066 * 206.28179 * 13 12 11 38 38 H 1.08997 * 108.51073 * 323.92938 * 13 12 11 39 39 H 1.09001 * 109.32621 * 176.93254 * 14 13 12 40 40 H 1.08998 * 109.33464 * 57.44973 * 14 13 12 41 41 H 1.08997 * 109.47227 * 185.00062 * 17 15 9 42 42 H 1.09006 * 109.46615 * 64.99894 * 17 15 9 43 43 H 0.96998 * 120.00112 * 359.97438 * 18 17 15 44 44 H 1.08000 * 120.35407 * 359.75814 * 22 21 19 45 45 H 1.08003 * 119.45271 * 179.97438 * 23 22 21 46 46 H 1.08004 * 119.21366 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7002 7 6 2.0103 -1.2022 0.0005 8 1 3.0608 -1.2193 -0.2493 9 7 1.3629 -2.3664 0.3180 10 6 0.2007 -2.3048 1.2259 11 6 0.2092 -3.4473 2.2577 12 6 1.6115 -3.6773 2.7649 13 6 2.2911 -4.7406 1.9075 14 6 2.9177 -4.2214 0.6821 15 6 1.8458 -3.6050 -0.2503 16 1 1.0153 -4.3025 -0.3590 17 6 2.4625 -3.3293 -1.6232 18 7 1.4842 -2.6406 -2.4686 19 6 1.8089 -2.2942 -3.7300 20 8 2.9143 -2.5532 -4.1663 21 6 0.8253 -1.6011 -4.5799 22 6 -0.4431 -1.2955 -4.1003 23 6 -1.3496 -0.6379 -4.9358 24 6 -1.0124 -0.2958 -6.2001 25 7 0.2146 -0.5748 -6.7086 26 7 0.8318 -0.3488 -7.9470 27 7 2.0248 -0.8336 -7.8670 28 7 2.2326 -1.3450 -6.7056 29 6 1.1567 -1.2160 -5.9511 30 1 -0.4850 0.8400 -0.0004 31 1 0.2140 -1.3512 1.7536 32 1 -0.7133 -2.3695 0.6356 33 1 -0.4390 -3.1842 3.0936 34 1 -0.1579 -4.3603 1.7889 35 1 2.1765 -2.7470 2.7064 36 1 1.5727 -4.0148 3.8006 37 1 3.0580 -5.2306 2.5074 38 1 1.5467 -5.4847 1.6245 39 1 3.4227 -5.0357 0.1624 40 1 3.6485 -3.4572 0.9464 41 1 2.7460 -4.2725 -2.0901 42 1 3.3462 -2.7022 -1.5052 43 1 0.6027 -2.4337 -2.1205 44 1 -0.7263 -1.5674 -3.0942 45 1 -2.3360 -0.3995 -4.5660 46 1 -1.7367 0.2123 -6.8196 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968871683.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:15 Heat of formation + Delta-G solvation = 120.318882 kcal Electronic energy + Delta-G solvation = -31192.531076 eV Core-core repulsion = 27120.391512 eV Total energy + Delta-G solvation = -4072.139565 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.48739 -40.92119 -39.73117 -39.20111 -36.02020 -35.22931 -35.05651 -33.35449 -33.01570 -32.41824 -31.59333 -28.65000 -27.36865 -26.25589 -25.36063 -25.15028 -24.56621 -23.33156 -21.79930 -21.10116 -20.73597 -19.82511 -18.82222 -18.54580 -18.03421 -17.72135 -17.20322 -16.68298 -16.50085 -16.20691 -15.93795 -15.69260 -15.19325 -15.14019 -14.84841 -14.56520 -14.31271 -14.14137 -13.88634 -13.69429 -13.66413 -13.38773 -13.21230 -13.13947 -12.89670 -12.79945 -12.70968 -12.49094 -12.35375 -12.16982 -11.97527 -11.49467 -11.34720 -11.29061 -11.26675 -11.15109 -11.11835 -10.83094 -10.30150 -9.96051 -9.61356 -8.48628 -7.75976 -5.16692 -1.03879 -0.60424 0.57070 0.95904 1.40150 1.46903 1.52093 1.53306 2.12677 2.39270 2.49309 2.55494 2.89624 3.38670 3.45842 3.60440 3.65653 3.77256 4.03432 4.09763 4.13976 4.21330 4.31486 4.38385 4.48596 4.54647 4.60823 4.67195 4.73729 4.77483 4.88473 4.98559 5.07499 5.13331 5.19753 5.29928 5.32509 5.34587 5.44337 5.48593 5.60255 5.64536 5.74823 5.81485 5.87257 5.98351 6.53696 6.68444 7.16484 7.30482 7.33650 8.05990 8.43797 9.26968 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012944 B = 0.003811 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.613814 B = 7345.366761 C = 8073.691221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.011 4.011 3 Si 0.914 3.086 4 H -0.305 1.305 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.232 4.232 8 H 0.040 0.960 9 N -0.586 5.586 10 C 0.189 3.811 11 C -0.134 4.134 12 C -0.105 4.105 13 C -0.100 4.100 14 C -0.131 4.131 15 C 0.176 3.824 16 H 0.066 0.934 17 C 0.133 3.867 18 N -0.674 5.674 19 C 0.552 3.448 20 O -0.573 6.573 21 C -0.133 4.133 22 C 0.018 3.982 23 C -0.114 4.114 24 C 0.121 3.879 25 N -0.304 5.304 26 N -0.119 5.119 27 N -0.038 5.038 28 N -0.342 5.342 29 C 0.256 3.744 30 H 0.249 0.751 31 H 0.038 0.962 32 H 0.016 0.984 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.040 0.960 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.038 0.962 41 H 0.068 0.932 42 H 0.040 0.960 43 H 0.413 0.587 44 H 0.181 0.819 45 H 0.231 0.769 46 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.445 -5.941 -1.214 12.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.208 4.208 3 Si 0.746 3.254 4 H -0.233 1.233 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.363 4.363 8 H 0.058 0.942 9 N -0.309 5.309 10 C 0.065 3.935 11 C -0.173 4.173 12 C -0.142 4.142 13 C -0.137 4.137 14 C -0.171 4.171 15 C 0.068 3.932 16 H 0.084 0.916 17 C 0.008 3.992 18 N -0.323 5.323 19 C 0.337 3.663 20 O -0.454 6.454 21 C -0.142 4.142 22 C -0.007 4.007 23 C -0.137 4.137 24 C -0.004 4.004 25 N -0.084 5.084 26 N -0.103 5.103 27 N -0.031 5.031 28 N -0.201 5.201 29 C -0.001 4.001 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.034 0.966 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.057 0.943 41 H 0.086 0.914 42 H 0.059 0.941 43 H 0.251 0.749 44 H 0.198 0.802 45 H 0.248 0.752 46 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -9.890 -5.843 -2.874 11.841 hybrid contribution 0.266 1.640 0.764 1.829 sum -9.624 -4.203 -2.110 10.711 Atomic orbital electron populations 1.70015 1.04505 1.24977 1.55571 1.24990 0.95586 0.98219 1.02004 0.86155 0.78746 0.84050 0.76428 1.23329 1.21652 1.21747 1.18872 0.91474 0.85931 1.40040 0.94204 1.43766 1.34250 1.01594 1.51287 1.20815 0.87695 0.95449 0.89561 1.21960 0.96746 0.99614 0.98934 1.20915 0.96365 0.98757 0.98203 1.20267 0.99836 0.97752 0.95881 1.21304 0.98684 0.99706 0.97421 1.20654 0.95021 0.88488 0.89027 0.91579 1.21523 0.91565 0.95270 0.90825 1.45462 1.18586 1.57632 1.10652 1.17769 0.86527 0.79450 0.82515 1.90821 1.23518 1.56532 1.74486 1.20259 0.97533 1.07843 0.88593 1.22559 0.88829 0.88023 1.01319 1.21739 1.03700 0.97964 0.90274 1.22895 0.83107 0.97429 0.96991 1.49103 1.13149 1.35828 1.10366 1.82548 1.03498 1.26181 0.98028 1.77927 1.08196 1.04610 1.12324 1.75131 1.22296 1.24348 0.98346 1.23692 0.86298 0.95159 0.94906 0.94079 0.94377 0.96599 0.92145 0.91915 0.94103 0.92199 0.92445 0.91726 0.91126 0.94296 0.91395 0.94140 0.74853 0.80165 0.75212 0.75070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -41.61 11.13 21.65 0.24 -41.37 16 2 C -0.01 -0.51 4.86 84.86 0.41 -0.09 16 3 Si 0.91 42.02 29.58 68.60 2.03 44.05 16 4 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 5 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 6 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 7 C -0.23 -10.63 7.62 84.03 0.64 -9.99 16 8 H 0.04 2.02 6.74 -2.91 -0.02 2.00 16 9 N -0.59 -22.48 1.77 -674.24 -1.20 -23.67 16 10 C 0.19 7.05 4.66 86.49 0.40 7.46 16 11 C -0.13 -3.90 5.71 30.23 0.17 -3.72 16 12 C -0.10 -3.01 5.51 29.76 0.16 -2.85 16 13 C -0.10 -2.57 5.16 28.61 0.15 -2.42 16 14 C -0.13 -3.83 5.06 29.40 0.15 -3.68 16 15 C 0.18 5.69 2.19 45.99 0.10 5.79 16 16 H 0.07 1.93 8.06 -2.39 -0.02 1.91 16 17 C 0.13 4.68 4.52 86.38 0.39 5.07 16 18 N -0.67 -23.56 4.67 -466.46 -2.18 -25.74 16 19 C 0.55 21.40 7.77 86.63 0.67 22.07 16 20 O -0.57 -27.13 16.28 -4.11 -0.07 -27.20 16 21 C -0.13 -4.26 6.06 -18.63 -0.11 -4.37 16 22 C 0.02 0.39 9.63 22.81 0.22 0.61 16 23 C -0.11 -1.34 9.92 21.94 0.22 -1.12 16 24 C 0.12 1.77 11.15 83.40 0.93 2.70 16 25 N -0.30 -8.44 3.94 -188.69 -0.74 -9.18 16 26 N -0.12 -3.90 13.99 37.02 0.52 -3.38 16 27 N -0.04 -1.47 13.36 37.02 0.49 -0.98 16 28 N -0.34 -14.51 11.75 -52.05 -0.61 -15.12 16 29 C 0.26 9.13 7.85 135.76 1.07 10.20 16 30 H 0.25 11.47 8.31 -92.71 -0.77 10.70 16 31 H 0.04 1.69 6.47 -2.39 -0.02 1.67 16 32 H 0.02 0.62 8.02 -2.39 -0.02 0.60 16 33 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.06 1.63 7.31 -2.39 -0.02 1.61 16 35 H 0.04 1.45 7.48 -2.38 -0.02 1.43 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.06 1.48 7.35 -2.39 -0.02 1.46 16 39 H 0.07 1.79 8.11 -2.39 -0.02 1.77 16 40 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.04 1.69 6.84 -2.38 -0.02 1.67 16 43 H 0.41 13.49 6.19 -92.71 -0.57 12.92 16 44 H 0.18 3.50 6.49 -2.91 -0.02 3.48 16 45 H 0.23 0.24 8.06 -2.91 -0.02 0.22 16 46 H 0.23 0.97 8.06 -2.91 -0.02 0.95 16 Total: -1.00 -70.85 369.66 4.51 -66.34 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 0.45 Total: 10.60 kcal Atomic # 6 Polarization: 20.07 SS G_CDS: 5.57 Total: 25.64 kcal Atomic # 7 Polarization: -115.96 SS G_CDS: -3.48 Total: -119.44 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.07 Total: -27.20 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -70.85 4.51 -66.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968871683.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.658 kcal (2) G-P(sol) polarization free energy of solvation -70.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds