Wall clock time and date at job start Wed Apr 1 2020 04:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00124 * 2 1 4 4 H 1.48502 * 109.46674 * 85.61835 * 3 2 1 5 5 H 1.48493 * 109.47191 * 325.62049 * 3 2 1 6 6 H 1.48496 * 109.47104 * 205.61506 * 3 2 1 7 7 C 1.38814 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99898 * 195.60665 * 7 2 1 9 9 N 1.36932 * 120.00285 * 15.60323 * 7 2 1 10 10 C 1.47605 * 118.63972 * 28.13749 * 9 7 2 11 11 C 1.54295 * 111.94015 * 137.78370 * 10 9 7 12 12 C 1.50881 * 110.23547 * 319.69689 * 11 10 9 13 13 C 1.52562 * 109.35788 * 91.80065 * 12 11 10 14 14 C 1.47092 * 114.32995 * 274.98951 * 13 12 11 15 15 C 1.44581 * 118.64511 * 208.41079 * 9 7 2 16 16 H 1.09003 * 109.45102 * 150.66188 * 15 9 7 17 17 C 1.52995 * 109.45063 * 30.71622 * 15 9 7 18 18 N 1.46495 * 109.47585 * 55.00093 * 17 15 9 19 19 C 1.34774 * 120.00452 * 179.97438 * 18 17 15 20 20 O 1.21628 * 120.00011 * 0.02562 * 19 18 17 21 21 C 1.47314 * 120.00217 * 179.97438 * 19 18 17 22 22 C 1.39009 * 120.90369 * 0.02562 * 21 19 18 23 23 C 1.39724 * 119.28784 * 180.02562 * 22 21 19 24 24 C 1.35257 * 121.08107 * 359.97438 * 23 22 21 25 25 N 1.35711 * 121.57625 * 0.02562 * 24 23 22 26 26 N 1.40207 * 134.09033 * 180.02562 * 25 24 23 27 27 N 1.29031 * 106.95566 * 179.22737 * 26 25 24 28 28 N 1.28587 * 110.78526 * 0.66463 * 27 26 25 29 29 C 1.32045 * 110.22021 * 359.40070 * 28 27 26 30 30 H 0.96999 * 119.99598 * 359.97438 * 1 2 3 31 31 H 1.09006 * 108.94748 * 258.57539 * 10 9 7 32 32 H 1.08997 * 108.94902 * 17.20339 * 10 9 7 33 33 H 1.09001 * 109.36488 * 199.41978 * 11 10 9 34 34 H 1.09000 * 109.22991 * 79.88825 * 11 10 9 35 35 H 1.08996 * 109.48761 * 331.83749 * 12 11 10 36 36 H 1.09003 * 109.48957 * 211.76635 * 12 11 10 37 37 H 1.09006 * 108.51380 * 153.73353 * 13 12 11 38 38 H 1.08999 * 108.39434 * 36.15358 * 13 12 11 39 39 H 1.08999 * 109.32553 * 302.54540 * 14 13 12 40 40 H 1.08994 * 109.19306 * 182.97241 * 14 13 12 41 41 H 1.09001 * 109.47231 * 175.00291 * 17 15 9 42 42 H 1.09008 * 109.46967 * 294.99885 * 17 15 9 43 43 H 0.97010 * 119.99745 * 0.02562 * 18 17 15 44 44 H 1.07998 * 120.35375 * 359.97438 * 22 21 19 45 45 H 1.07994 * 119.45444 * 179.97438 * 23 22 21 46 46 H 1.07997 * 119.21302 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4051 2.0998 1.3960 5 1 1.4971 2.6242 -0.7905 6 1 3.5910 1.4152 -0.6053 7 6 2.0102 -1.2022 -0.0005 8 1 3.0604 -1.2195 0.2511 9 7 1.3635 -2.3661 -0.3200 10 6 0.2005 -2.3033 -1.2268 11 6 0.2150 -3.4465 -2.2630 12 6 1.6186 -3.6768 -2.7663 13 6 2.2957 -4.7403 -1.9072 14 6 2.9187 -4.2215 -0.6798 15 6 1.8442 -3.6050 0.2495 16 1 1.0131 -4.3021 0.3560 17 6 2.4573 -3.3297 1.6240 18 7 1.4772 -2.6406 2.4669 19 6 1.7984 -2.2955 3.7295 20 8 2.9022 -2.5557 4.1690 21 6 0.8129 -1.6020 4.5769 22 6 -0.4538 -1.2949 4.0937 23 6 -1.3618 -0.6360 4.9265 24 6 -1.0278 -0.2942 6.1918 25 7 0.1973 -0.5747 6.7038 26 7 0.8110 -0.3501 7.9442 27 7 1.9979 -0.8511 7.8731 28 7 2.2096 -1.3597 6.7112 29 6 1.1386 -1.2231 5.9511 30 1 -0.4849 0.8401 0.0004 31 1 -0.7131 -2.3683 -0.6358 32 1 0.2128 -1.3485 -1.7525 33 1 -0.4307 -3.1831 -3.1007 34 1 -0.1559 -4.3589 -1.7961 35 1 2.1837 -2.7468 -2.7061 36 1 1.5827 -4.0147 -3.8020 37 1 3.0643 -5.2304 -2.5049 38 1 1.5492 -5.4840 -1.6285 39 1 3.6504 -3.4573 -0.9419 40 1 3.4200 -5.0377 -0.1598 41 1 2.7393 -4.2731 2.0916 42 1 3.3417 -2.7030 1.5084 43 1 0.5967 -2.4334 2.1165 44 1 -0.7327 -1.5620 3.0851 45 1 -2.3465 -0.3958 4.5537 46 1 -1.7534 0.2140 6.8095 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968871687.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:20 Heat of formation + Delta-G solvation = 138.397824 kcal Electronic energy + Delta-G solvation = -31191.595040 eV Core-core repulsion = 27120.239437 eV Total energy + Delta-G solvation = -4071.355603 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.28377 -39.54849 -38.47992 -37.89416 -34.60376 -33.93076 -33.57179 -32.05869 -31.81237 -30.83280 -30.40974 -27.19684 -25.91779 -25.07567 -24.26100 -23.58859 -23.26572 -22.02175 -20.45967 -19.79586 -19.28460 -18.59043 -17.52208 -17.43511 -16.81907 -16.22525 -15.74010 -15.57528 -15.15029 -14.72893 -14.46316 -14.13257 -13.87335 -13.70896 -13.64167 -13.21504 -13.09602 -12.84864 -12.69924 -12.46720 -12.29837 -12.17675 -12.00045 -11.64289 -11.37178 -11.23590 -11.14463 -10.92089 -10.89965 -10.67949 -10.28713 -10.23973 -10.10374 -10.05519 -9.80293 -9.70541 -9.64478 -9.45852 -8.68775 -8.53065 -8.29820 -6.81943 -5.95579 -3.38939 0.00075 0.49706 1.62661 2.18249 2.63661 3.28012 3.36231 3.39228 3.41782 3.60187 3.69416 4.04902 4.32650 4.38093 4.53864 4.87210 5.07904 5.10994 5.24246 5.28056 5.36474 5.41374 5.46381 5.57497 5.61455 5.64175 5.80610 5.89298 5.93544 6.00429 6.07079 6.23972 6.26508 6.32141 6.48951 6.54183 6.59232 6.61708 6.69226 6.76869 6.91399 7.01663 7.09899 7.29854 7.54509 7.72525 8.09065 8.31050 8.42593 8.70874 9.08977 9.73023 10.18085 11.10903 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012943 B = 0.003812 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.869258 B = 7344.344676 C = 8075.556246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.014 3.986 3 Si 0.888 3.112 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.247 4.247 8 H 0.063 0.937 9 N -0.585 5.585 10 C 0.181 3.819 11 C -0.143 4.143 12 C -0.107 4.107 13 C -0.101 4.101 14 C -0.136 4.136 15 C 0.173 3.827 16 H 0.046 0.954 17 C 0.130 3.870 18 N -0.680 5.680 19 C 0.555 3.445 20 O -0.524 6.524 21 C -0.089 4.089 22 C -0.013 4.013 23 C -0.133 4.133 24 C 0.113 3.887 25 N -0.308 5.308 26 N -0.118 5.118 27 N -0.016 5.016 28 N -0.291 5.291 29 C 0.274 3.726 30 H 0.252 0.748 31 H 0.025 0.975 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.043 0.957 35 H 0.074 0.926 36 H 0.039 0.961 37 H 0.041 0.959 38 H 0.046 0.954 39 H 0.064 0.936 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.072 0.928 43 H 0.409 0.591 44 H 0.172 0.828 45 H 0.174 0.826 46 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.909 -4.984 2.070 9.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.185 4.185 3 Si 0.718 3.282 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.376 4.376 8 H 0.081 0.919 9 N -0.307 5.307 10 C 0.056 3.944 11 C -0.182 4.182 12 C -0.144 4.144 13 C -0.139 4.139 14 C -0.177 4.177 15 C 0.064 3.936 16 H 0.064 0.936 17 C 0.006 3.994 18 N -0.331 5.331 19 C 0.339 3.661 20 O -0.401 6.401 21 C -0.098 4.098 22 C -0.039 4.039 23 C -0.157 4.157 24 C -0.014 4.014 25 N -0.088 5.088 26 N -0.101 5.101 27 N -0.009 5.009 28 N -0.149 5.149 29 C 0.016 3.984 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.247 0.753 44 H 0.189 0.811 45 H 0.191 0.809 46 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -6.329 -4.879 3.762 8.833 hybrid contribution -0.700 1.320 -0.973 1.783 sum -7.029 -3.559 2.789 8.358 Atomic orbital electron populations 1.70006 1.04896 1.25360 1.54665 1.24856 0.95155 0.97812 1.00643 0.86506 0.79662 0.84402 0.77634 1.21676 1.21656 1.20459 1.19064 0.92436 0.84673 1.41449 0.91884 1.43759 1.34449 1.01642 1.50828 1.21068 0.88389 0.95585 0.89320 1.22119 0.96095 1.00447 0.99563 1.20941 0.97052 0.99824 0.96623 1.20291 0.99038 0.97911 0.96632 1.21365 0.99639 0.99835 0.96852 1.20529 0.94155 0.89406 0.89492 0.93592 1.21562 0.92407 0.95372 0.90096 1.45515 1.18683 1.57930 1.10929 1.17318 0.86532 0.80077 0.82222 1.90861 1.21460 1.54384 1.73410 1.20504 0.96153 1.04347 0.88842 1.22220 0.90293 0.90540 1.00811 1.21076 1.02530 1.00461 0.91605 1.21707 0.84557 0.99159 0.95973 1.48934 1.12230 1.36144 1.11480 1.82735 1.04296 1.26115 0.96963 1.78003 1.07087 1.03547 1.12225 1.75274 1.19908 1.22549 0.97165 1.23668 0.86041 0.94327 0.94384 0.93773 0.95717 0.90873 0.93298 0.93803 0.90770 0.94204 0.94047 0.93518 0.91722 0.93192 0.92683 0.90964 0.75338 0.81111 0.80858 0.80186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.08 11.13 55.49 0.62 -20.46 16 2 C 0.01 0.32 4.86 -17.43 -0.08 0.24 16 3 Si 0.89 20.17 29.58 -169.99 -5.03 15.14 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.25 -5.55 7.62 -15.06 -0.11 -5.66 16 8 H 0.06 1.52 6.75 -52.48 -0.35 1.17 16 9 N -0.58 -11.35 1.77 -164.25 -0.29 -11.64 16 10 C 0.18 3.49 4.70 -2.76 -0.01 3.47 16 11 C -0.14 -2.29 5.71 -27.12 -0.15 -2.44 16 12 C -0.11 -1.66 5.51 -28.02 -0.15 -1.82 16 13 C -0.10 -1.45 5.16 -29.79 -0.15 -1.61 16 14 C -0.14 -2.10 5.06 -28.58 -0.14 -2.24 16 15 C 0.17 2.90 2.19 -67.97 -0.15 2.75 16 16 H 0.05 0.74 8.06 -51.93 -0.42 0.33 16 17 C 0.13 2.26 4.52 -4.05 -0.02 2.25 16 18 N -0.68 -11.81 4.67 -61.42 -0.29 -12.10 16 19 C 0.55 10.40 7.77 -12.57 -0.10 10.30 16 20 O -0.52 -11.67 16.28 5.25 0.09 -11.58 16 21 C -0.09 -1.44 6.06 -102.72 -0.62 -2.06 16 22 C -0.01 -0.15 9.63 -38.74 -0.37 -0.53 16 23 C -0.13 -1.13 9.92 -40.09 -0.40 -1.53 16 24 C 0.11 1.08 11.15 -16.90 -0.19 0.89 16 25 N -0.31 -4.49 3.94 -10.99 -0.04 -4.54 16 26 N -0.12 -1.95 13.99 60.35 0.84 -1.10 16 27 N -0.02 -0.29 13.36 60.35 0.81 0.51 16 28 N -0.29 -5.86 11.75 32.20 0.38 -5.48 16 29 C 0.27 4.81 7.85 -154.51 -1.21 3.59 16 30 H 0.25 5.91 8.31 -40.82 -0.34 5.57 16 31 H 0.02 0.50 8.02 -51.93 -0.42 0.09 16 32 H 0.07 1.64 6.46 -51.93 -0.34 1.30 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.04 0.66 7.31 -51.93 -0.38 0.28 16 35 H 0.07 1.35 7.49 -51.93 -0.39 0.96 16 36 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.64 7.35 -51.93 -0.38 0.26 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.05 0.69 8.11 -51.93 -0.42 0.27 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.07 1.43 6.84 -51.92 -0.36 1.08 16 43 H 0.41 6.86 6.19 -40.82 -0.25 6.60 16 44 H 0.17 1.94 6.49 -52.49 -0.34 1.59 16 45 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 46 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 369.69 15.07 5.57 5.57 Total: -1.00 -29.40 369.69 -7.36 -36.76 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.14 Total: 3.30 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -3.88 Total: 5.61 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: 2.03 Total: -54.80 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.14 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.40 -7.36 -36.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968871687.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.159 kcal (2) G-P(sol) polarization free energy of solvation -29.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds