Wall clock time and date at job start Wed Apr 1 2020 04:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99870 * 2 1 4 4 H 1.48500 * 109.47129 * 85.62015 * 3 2 1 5 5 H 1.48499 * 109.47324 * 325.61666 * 3 2 1 6 6 H 1.48507 * 109.46861 * 205.61669 * 3 2 1 7 7 C 1.38809 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99502 * 195.61009 * 7 2 1 9 9 N 1.36932 * 120.00389 * 15.60376 * 7 2 1 10 10 C 1.47605 * 118.63972 * 28.14786 * 9 7 2 11 11 C 1.54295 * 111.94015 * 137.78370 * 10 9 7 12 12 C 1.50881 * 110.23547 * 319.69689 * 11 10 9 13 13 C 1.52562 * 109.35788 * 91.80065 * 12 11 10 14 14 C 1.47092 * 114.32995 * 274.98951 * 13 12 11 15 15 C 1.44581 * 118.64511 * 208.42116 * 9 7 2 16 16 H 1.09003 * 109.45102 * 150.66188 * 15 9 7 17 17 C 1.52995 * 109.45063 * 30.71622 * 15 9 7 18 18 N 1.46495 * 109.47585 * 55.00093 * 17 15 9 19 19 C 1.34774 * 120.00452 * 179.97438 * 18 17 15 20 20 O 1.21521 * 120.00015 * 0.02562 * 19 18 17 21 21 C 1.48119 * 119.99936 * 179.97438 * 19 18 17 22 22 C 1.39822 * 119.37212 * 180.02562 * 21 19 18 23 23 C 1.36970 * 119.60962 * 179.97438 * 22 21 19 24 24 C 1.39813 * 118.25227 * 359.97438 * 23 22 21 25 25 N 1.34646 * 135.00747 * 179.97438 * 24 23 22 26 26 N 1.28665 * 109.16272 * 180.02562 * 25 24 23 27 27 N 1.28768 * 111.84730 * 0.02562 * 26 25 24 28 28 H 0.96999 * 125.86606 * 180.02562 * 27 26 25 29 29 C 1.37252 * 108.28043 * 359.97438 * 27 26 25 30 30 N 1.31960 * 134.70812 * 180.28348 * 29 27 26 31 31 H 0.97005 * 120.00092 * 359.97438 * 1 2 3 32 32 H 1.09006 * 108.94748 * 258.57539 * 10 9 7 33 33 H 1.08997 * 108.94902 * 17.20339 * 10 9 7 34 34 H 1.09001 * 109.36488 * 199.41978 * 11 10 9 35 35 H 1.09000 * 109.22991 * 79.88825 * 11 10 9 36 36 H 1.08996 * 109.48761 * 331.83749 * 12 11 10 37 37 H 1.09003 * 109.48957 * 211.76635 * 12 11 10 38 38 H 1.09006 * 108.51380 * 153.73353 * 13 12 11 39 39 H 1.08999 * 108.39434 * 36.15358 * 13 12 11 40 40 H 1.08999 * 109.32553 * 302.54540 * 14 13 12 41 41 H 1.08994 * 109.19306 * 182.97241 * 14 13 12 42 42 H 1.09001 * 109.47231 * 175.00291 * 17 15 9 43 43 H 1.09008 * 109.46967 * 294.99885 * 17 15 9 44 44 H 0.97010 * 119.99745 * 0.02562 * 18 17 15 45 45 H 1.08002 * 120.19807 * 359.95486 * 22 21 19 46 46 H 1.07997 * 120.87169 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4050 2.0999 1.3960 5 1 1.4970 2.6242 -0.7906 6 1 3.5910 1.4152 -0.6054 7 6 2.0102 -1.2021 -0.0005 8 1 3.0604 -1.2194 0.2512 9 7 1.3634 -2.3660 -0.3200 10 6 0.2006 -2.3033 -1.2270 11 6 0.2153 -3.4465 -2.2631 12 6 1.6189 -3.6770 -2.7661 13 6 2.2959 -4.7404 -1.9068 14 6 2.9186 -4.2216 -0.6794 15 6 1.8440 -3.6049 0.2497 16 1 1.0129 -4.3020 0.3561 17 6 2.4570 -3.3296 1.6242 18 7 1.4767 -2.6404 2.4670 19 6 1.7977 -2.2951 3.7296 20 8 2.9005 -2.5552 4.1689 21 6 0.8067 -1.5978 4.5813 22 6 1.1538 -1.2452 5.8891 23 6 0.2413 -0.5998 6.6808 24 6 -1.0173 -0.3147 6.1429 25 7 -2.1341 0.2840 6.5981 26 7 -3.0237 0.2812 5.6686 27 7 -2.5930 -0.2839 4.5947 28 1 -3.0937 -0.3966 3.7717 29 6 -1.3031 -0.6985 4.8141 30 7 -0.3898 -1.3147 4.0877 31 1 -0.4850 0.8401 0.0004 32 1 -0.7131 -2.3682 -0.6361 33 1 0.2130 -1.3486 -1.7528 34 1 -0.4303 -3.1833 -3.1010 35 1 -0.1557 -4.3589 -1.7962 36 1 2.1841 -2.7470 -2.7060 37 1 1.5832 -4.0150 -3.8019 38 1 3.0645 -5.2306 -2.5044 39 1 1.5492 -5.4841 -1.6282 40 1 3.6504 -3.4574 -0.9415 41 1 3.4199 -5.0378 -0.1593 42 1 2.7388 -4.2729 2.0920 43 1 3.3414 -2.7029 1.5087 44 1 0.5962 -2.4331 2.1164 45 1 2.1355 -1.4808 6.2729 46 1 0.4879 -0.3177 7.6937 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968884855.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:18 Heat of formation + Delta-G solvation = 112.572339 kcal Electronic energy + Delta-G solvation = -31153.885744 eV Core-core repulsion = 27081.410264 eV Total energy + Delta-G solvation = -4072.475480 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.38716 -39.91207 -38.54780 -37.73614 -34.64421 -34.25695 -33.52300 -32.12043 -31.57174 -30.88709 -30.65778 -27.26601 -25.99263 -25.17165 -23.86960 -23.49013 -22.74040 -22.18711 -20.44297 -19.78197 -19.24704 -18.85455 -18.41351 -17.63451 -16.60878 -16.26453 -15.67044 -15.38077 -15.07087 -14.75656 -14.57338 -14.12313 -14.00842 -13.59570 -13.51908 -13.36836 -13.08861 -12.79618 -12.64051 -12.42600 -12.10863 -11.99141 -11.83474 -11.70092 -11.52421 -11.28783 -11.13670 -10.88208 -10.63941 -10.25133 -10.10966 -10.06024 -10.00647 -9.73631 -9.61229 -9.59455 -9.33028 -9.28420 -9.08685 -8.45983 -8.29802 -6.73023 -5.86532 -3.30010 0.13357 0.95142 2.09311 2.14205 2.97099 3.31010 3.39492 3.42193 3.50203 3.74441 3.90179 4.23170 4.36788 4.43434 4.74610 4.94510 5.16240 5.30949 5.31378 5.40300 5.43649 5.48445 5.60971 5.68103 5.81662 5.86575 5.97936 6.03523 6.10033 6.21501 6.25267 6.34827 6.51926 6.56769 6.57306 6.61968 6.65754 6.71602 6.80740 6.94816 7.04501 7.12151 7.36411 7.43439 7.61909 7.78205 8.05234 8.19836 8.38262 8.71809 9.16116 9.81079 10.26506 11.19749 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011586 B = 0.003939 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.076678 B = 7107.405653 C = 7646.509603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.016 3.984 3 Si 0.888 3.112 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.063 0.937 9 N -0.583 5.583 10 C 0.182 3.818 11 C -0.143 4.143 12 C -0.106 4.106 13 C -0.101 4.101 14 C -0.136 4.136 15 C 0.173 3.827 16 H 0.045 0.955 17 C 0.125 3.875 18 N -0.661 5.661 19 C 0.562 3.438 20 O -0.549 6.549 21 C 0.159 3.841 22 C -0.124 4.124 23 C -0.010 4.010 24 C -0.031 4.031 25 N -0.245 5.245 26 N 0.003 4.997 27 N -0.398 5.398 28 H 0.461 0.539 29 C 0.222 3.778 30 N -0.425 5.425 31 H 0.250 0.750 32 H 0.024 0.976 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.043 0.957 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.041 0.959 39 H 0.046 0.954 40 H 0.064 0.936 41 H 0.049 0.951 42 H 0.055 0.945 43 H 0.073 0.927 44 H 0.423 0.577 45 H 0.165 0.835 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.830 -6.081 5.343 8.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.184 4.184 3 Si 0.718 3.282 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.080 0.920 9 N -0.305 5.305 10 C 0.057 3.943 11 C -0.182 4.182 12 C -0.144 4.144 13 C -0.138 4.138 14 C -0.176 4.176 15 C 0.064 3.936 16 H 0.063 0.937 17 C 0.000 4.000 18 N -0.309 5.309 19 C 0.345 3.655 20 O -0.428 6.428 21 C 0.004 3.996 22 C -0.147 4.147 23 C -0.041 4.041 24 C -0.158 4.158 25 N -0.122 5.122 26 N 0.020 4.980 27 N -0.130 5.130 28 H 0.309 0.691 29 C -0.023 4.023 30 N -0.141 5.141 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.261 0.739 45 H 0.182 0.818 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.638 -5.637 5.454 8.275 hybrid contribution 0.615 0.901 -0.647 1.269 sum -2.023 -4.735 4.807 7.044 Atomic orbital electron populations 1.70035 1.04923 1.25078 1.53868 1.24888 0.95100 0.97834 1.00536 0.86515 0.79579 0.84573 0.77528 1.21762 1.21749 1.20428 1.18982 0.92252 0.84641 1.42245 0.91981 1.43705 1.34416 1.01603 1.50741 1.21051 0.88504 0.95466 0.89279 1.22122 0.96073 1.00475 0.99543 1.20939 0.97067 0.99824 0.96568 1.20289 0.99010 0.97916 0.96633 1.21370 0.99645 0.99757 0.96877 1.20514 0.94107 0.89550 0.89437 0.93725 1.21624 0.92538 0.95357 0.90445 1.45634 1.19088 1.55384 1.10800 1.17591 0.85758 0.79674 0.82472 1.90749 1.21432 1.56517 1.74104 1.21431 0.89666 0.95634 0.92881 1.21750 1.01616 0.98084 0.93278 1.20434 0.88357 0.94587 1.00704 1.20662 0.96838 1.04204 0.94113 1.75344 0.98279 1.18064 1.20520 1.78046 1.20896 1.09533 0.89544 1.44679 1.09859 1.43291 1.15159 0.69057 1.19817 0.88486 1.01594 0.92359 1.66412 1.00414 1.11541 1.35686 0.93995 0.95768 0.90944 0.93335 0.93848 0.90747 0.94226 0.94065 0.93547 0.91730 0.93254 0.92685 0.90893 0.73852 0.81785 0.82642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.86 11.13 55.49 0.62 -22.24 16 2 C 0.02 0.39 4.86 -17.43 -0.08 0.31 16 3 Si 0.89 20.99 29.58 -169.99 -5.03 15.96 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.25 -5.97 7.62 -15.06 -0.11 -6.08 16 8 H 0.06 1.54 6.75 -52.49 -0.35 1.19 16 9 N -0.58 -12.14 1.77 -164.25 -0.29 -12.43 16 10 C 0.18 3.79 4.70 -2.76 -0.01 3.78 16 11 C -0.14 -2.45 5.71 -27.12 -0.15 -2.60 16 12 C -0.11 -1.73 5.51 -28.02 -0.15 -1.89 16 13 C -0.10 -1.51 5.16 -29.79 -0.15 -1.66 16 14 C -0.14 -2.16 5.06 -28.58 -0.14 -2.30 16 15 C 0.17 3.09 2.19 -67.97 -0.15 2.94 16 16 H 0.04 0.79 8.06 -51.93 -0.42 0.37 16 17 C 0.12 2.25 4.52 -4.05 -0.02 2.23 16 18 N -0.66 -12.53 4.70 -61.17 -0.29 -12.82 16 19 C 0.56 10.49 7.81 -12.21 -0.10 10.40 16 20 O -0.55 -10.95 16.29 5.35 0.09 -10.86 16 21 C 0.16 2.67 6.74 -82.93 -0.56 2.11 16 22 C -0.12 -1.67 9.55 -39.45 -0.38 -2.04 16 23 C -0.01 -0.12 10.16 -39.45 -0.40 -0.52 16 24 C -0.03 -0.45 7.38 -84.91 -0.63 -1.08 16 25 N -0.25 -3.69 12.43 32.12 0.40 -3.29 16 26 N 0.00 0.04 13.28 60.35 0.80 0.85 16 27 N -0.40 -5.36 7.06 31.13 0.22 -5.14 16 28 H 0.46 4.88 8.96 -190.26 -1.71 3.18 16 29 C 0.22 3.50 8.56 -156.27 -1.34 2.16 16 30 N -0.42 -7.33 9.54 -8.90 -0.08 -7.41 16 31 H 0.25 6.43 8.31 -40.82 -0.34 6.10 16 32 H 0.02 0.55 8.02 -51.93 -0.42 0.13 16 33 H 0.07 1.73 6.46 -51.93 -0.34 1.39 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.04 0.71 7.31 -51.93 -0.38 0.33 16 36 H 0.07 1.40 7.49 -51.93 -0.39 1.01 16 37 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.05 0.67 7.35 -51.93 -0.38 0.29 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.05 0.69 8.11 -51.93 -0.42 0.27 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 1.45 6.84 -51.92 -0.36 1.09 16 44 H 0.42 8.60 7.39 -40.82 -0.30 8.29 16 45 H 0.16 1.91 7.61 -52.49 -0.40 1.51 16 46 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 370.06 15.07 5.58 5.58 Total: -1.00 -27.77 370.06 -9.90 -37.67 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -7.53 Total: 8.40 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: -4.38 Total: 5.74 kcal Atomic # 7 Polarization: -63.86 SS G_CDS: 1.38 Total: -62.49 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -27.77 -9.90 -37.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968884855.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.246 kcal (2) G-P(sol) polarization free energy of solvation -27.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds