Wall clock time and date at job start Wed Apr 1 2020 04:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99870 * 2 1 4 4 H 1.48500 * 109.47129 * 85.62015 * 3 2 1 5 5 H 1.48499 * 109.47324 * 325.61666 * 3 2 1 6 6 H 1.48507 * 109.46861 * 205.61669 * 3 2 1 7 7 C 1.38809 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99502 * 195.61009 * 7 2 1 9 9 N 1.36932 * 120.00389 * 15.60376 * 7 2 1 10 10 C 1.47605 * 118.63972 * 28.14786 * 9 7 2 11 11 C 1.54295 * 111.94015 * 137.78370 * 10 9 7 12 12 C 1.50881 * 110.23547 * 319.69689 * 11 10 9 13 13 C 1.52562 * 109.35788 * 91.80065 * 12 11 10 14 14 C 1.47092 * 114.32995 * 274.98951 * 13 12 11 15 15 C 1.44581 * 118.64511 * 208.42116 * 9 7 2 16 16 H 1.09003 * 109.45102 * 150.66188 * 15 9 7 17 17 C 1.52995 * 109.45063 * 30.71622 * 15 9 7 18 18 N 1.46495 * 109.47585 * 55.00093 * 17 15 9 19 19 C 1.34774 * 120.00452 * 179.97438 * 18 17 15 20 20 O 1.21521 * 120.00015 * 0.02562 * 19 18 17 21 21 C 1.48119 * 119.99936 * 179.97438 * 19 18 17 22 22 C 1.39822 * 119.37212 * 180.02562 * 21 19 18 23 23 C 1.36970 * 119.60962 * 179.97438 * 22 21 19 24 24 C 1.39813 * 118.25227 * 359.97438 * 23 22 21 25 25 N 1.34646 * 135.00747 * 179.97438 * 24 23 22 26 26 N 1.28665 * 109.16272 * 180.02562 * 25 24 23 27 27 N 1.28768 * 111.84730 * 0.02562 * 26 25 24 28 28 H 0.96999 * 125.86606 * 180.02562 * 27 26 25 29 29 C 1.37252 * 108.28043 * 359.97438 * 27 26 25 30 30 N 1.31960 * 134.70812 * 180.28348 * 29 27 26 31 31 H 0.97005 * 120.00092 * 359.97438 * 1 2 3 32 32 H 1.09006 * 108.94748 * 258.57539 * 10 9 7 33 33 H 1.08997 * 108.94902 * 17.20339 * 10 9 7 34 34 H 1.09001 * 109.36488 * 199.41978 * 11 10 9 35 35 H 1.09000 * 109.22991 * 79.88825 * 11 10 9 36 36 H 1.08996 * 109.48761 * 331.83749 * 12 11 10 37 37 H 1.09003 * 109.48957 * 211.76635 * 12 11 10 38 38 H 1.09006 * 108.51380 * 153.73353 * 13 12 11 39 39 H 1.08999 * 108.39434 * 36.15358 * 13 12 11 40 40 H 1.08999 * 109.32553 * 302.54540 * 14 13 12 41 41 H 1.08994 * 109.19306 * 182.97241 * 14 13 12 42 42 H 1.09001 * 109.47231 * 175.00291 * 17 15 9 43 43 H 1.09008 * 109.46967 * 294.99885 * 17 15 9 44 44 H 0.97010 * 119.99745 * 0.02562 * 18 17 15 45 45 H 1.08002 * 120.19807 * 359.95486 * 22 21 19 46 46 H 1.07997 * 120.87169 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4050 2.0999 1.3960 5 1 1.4970 2.6242 -0.7906 6 1 3.5910 1.4152 -0.6054 7 6 2.0102 -1.2021 -0.0005 8 1 3.0604 -1.2194 0.2512 9 7 1.3634 -2.3660 -0.3200 10 6 0.2006 -2.3033 -1.2270 11 6 0.2153 -3.4465 -2.2631 12 6 1.6189 -3.6770 -2.7661 13 6 2.2959 -4.7404 -1.9068 14 6 2.9186 -4.2216 -0.6794 15 6 1.8440 -3.6049 0.2497 16 1 1.0129 -4.3020 0.3561 17 6 2.4570 -3.3296 1.6242 18 7 1.4767 -2.6404 2.4670 19 6 1.7977 -2.2951 3.7296 20 8 2.9005 -2.5552 4.1689 21 6 0.8067 -1.5978 4.5813 22 6 1.1538 -1.2452 5.8891 23 6 0.2413 -0.5998 6.6808 24 6 -1.0173 -0.3147 6.1429 25 7 -2.1341 0.2840 6.5981 26 7 -3.0237 0.2812 5.6686 27 7 -2.5930 -0.2839 4.5947 28 1 -3.0937 -0.3966 3.7717 29 6 -1.3031 -0.6985 4.8141 30 7 -0.3898 -1.3147 4.0877 31 1 -0.4850 0.8401 0.0004 32 1 -0.7131 -2.3682 -0.6361 33 1 0.2130 -1.3486 -1.7528 34 1 -0.4303 -3.1833 -3.1010 35 1 -0.1557 -4.3589 -1.7962 36 1 2.1841 -2.7470 -2.7060 37 1 1.5832 -4.0150 -3.8019 38 1 3.0645 -5.2306 -2.5044 39 1 1.5492 -5.4841 -1.6282 40 1 3.6504 -3.4574 -0.9415 41 1 3.4199 -5.0378 -0.1593 42 1 2.7388 -4.2729 2.0920 43 1 3.3414 -2.7029 1.5087 44 1 0.5962 -2.4331 2.1164 45 1 2.1355 -1.4808 6.2729 46 1 0.4879 -0.3177 7.6937 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968884855.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:17 Heat of formation + Delta-G solvation = 95.633763 kcal Electronic energy + Delta-G solvation = -31154.620256 eV Core-core repulsion = 27081.410264 eV Total energy + Delta-G solvation = -4073.209992 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.52024 -41.24831 -39.94377 -39.13053 -36.06363 -35.42991 -35.18638 -33.44137 -32.80951 -32.45052 -32.01951 -28.77351 -27.51913 -26.47229 -25.19277 -25.00652 -23.90011 -23.56555 -21.84189 -21.15934 -20.78491 -20.04909 -19.58155 -19.00305 -17.91608 -17.75922 -17.26234 -16.75740 -16.45582 -16.27191 -15.99917 -15.79614 -15.26110 -15.18822 -14.76685 -14.55626 -14.45571 -14.18150 -14.00133 -13.66072 -13.57458 -13.36932 -13.12759 -12.97830 -12.90846 -12.83384 -12.80779 -12.70330 -12.38049 -12.01521 -11.53285 -11.49335 -11.36733 -11.30116 -11.17702 -10.97295 -10.62051 -10.42243 -10.34257 -10.24804 -9.79315 -8.51808 -7.78324 -5.19813 -1.03457 -0.15226 0.91270 1.03497 1.36294 1.43578 1.47303 1.68315 2.19129 2.51912 2.60617 2.62425 3.08827 3.23610 3.37540 3.60733 3.63995 3.75782 4.06319 4.11125 4.26165 4.26762 4.29889 4.44022 4.52811 4.63561 4.68366 4.72020 4.74281 4.85236 5.02994 5.10138 5.15220 5.19039 5.27049 5.29475 5.41078 5.44498 5.50696 5.57201 5.63050 5.70178 5.78178 5.81090 5.91278 6.23273 6.48354 6.69773 6.92033 7.21715 7.28438 8.02887 8.41787 9.24535 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011586 B = 0.003939 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.076678 B = 7107.405653 C = 7646.509603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.023 4.023 3 Si 0.922 3.078 4 H -0.303 1.303 5 H -0.298 1.298 6 H -0.277 1.277 7 C -0.230 4.230 8 H 0.051 0.949 9 N -0.587 5.587 10 C 0.191 3.809 11 C -0.132 4.132 12 C -0.103 4.103 13 C -0.101 4.101 14 C -0.127 4.127 15 C 0.171 3.829 16 H 0.054 0.946 17 C 0.127 3.873 18 N -0.667 5.667 19 C 0.560 3.440 20 O -0.566 6.566 21 C 0.138 3.862 22 C -0.119 4.119 23 C 0.010 3.990 24 C -0.036 4.036 25 N -0.255 5.255 26 N 0.007 4.993 27 N -0.388 5.388 28 H 0.470 0.530 29 C 0.202 3.798 30 N -0.450 5.450 31 H 0.241 0.759 32 H 0.001 0.999 33 H 0.037 0.963 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.043 0.957 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.044 0.956 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.051 0.949 44 H 0.416 0.584 45 H 0.185 0.815 46 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.372 -7.718 5.930 9.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.220 4.220 3 Si 0.754 3.246 4 H -0.231 1.231 5 H -0.224 1.224 6 H -0.203 1.203 7 C -0.361 4.361 8 H 0.069 0.931 9 N -0.309 5.309 10 C 0.067 3.933 11 C -0.171 4.171 12 C -0.141 4.141 13 C -0.138 4.138 14 C -0.167 4.167 15 C 0.064 3.936 16 H 0.072 0.928 17 C 0.003 3.997 18 N -0.315 5.315 19 C 0.344 3.656 20 O -0.446 6.446 21 C -0.016 4.016 22 C -0.142 4.142 23 C -0.020 4.020 24 C -0.164 4.164 25 N -0.132 5.132 26 N 0.023 4.977 27 N -0.122 5.122 28 H 0.321 0.679 29 C -0.043 4.043 30 N -0.166 5.166 31 H 0.051 0.949 32 H 0.019 0.981 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.069 0.931 44 H 0.253 0.747 45 H 0.202 0.798 46 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -2.162 -7.302 6.021 9.708 hybrid contribution 0.462 1.386 -0.807 1.669 sum -1.701 -5.915 5.215 8.067 Atomic orbital electron populations 1.70124 1.05257 1.24405 1.55729 1.25207 0.95525 0.99147 1.02107 0.85966 0.78945 0.83241 0.76415 1.23143 1.22446 1.20276 1.18938 0.91658 0.85609 1.39915 0.93145 1.43756 1.34092 1.01908 1.51163 1.20812 0.87501 0.95528 0.89498 1.21990 0.97245 0.99224 0.98649 1.20901 0.95891 0.99007 0.98297 1.20278 0.99863 0.97608 0.96058 1.21277 0.98458 0.99872 0.97142 1.20705 0.95000 0.88291 0.89634 0.92765 1.21645 0.91561 0.95753 0.90770 1.45719 1.18795 1.55730 1.11218 1.17909 0.85998 0.79298 0.82438 1.90721 1.22169 1.57280 1.74426 1.21346 0.89472 0.96781 0.93998 1.21937 1.02676 0.97693 0.91917 1.20894 0.86637 0.92420 1.02095 1.21044 0.97651 1.03944 0.93773 1.75336 0.98467 1.18580 1.20784 1.78001 1.20805 1.09250 0.89635 1.44723 1.09405 1.42622 1.15415 0.67922 1.20009 0.88976 1.02265 0.93026 1.66265 1.01047 1.12572 1.36719 0.94945 0.98127 0.94489 0.92305 0.92313 0.93846 0.91973 0.91921 0.92133 0.93725 0.90573 0.90526 0.93081 0.74725 0.79805 0.78367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.04 11.13 21.65 0.24 -47.80 16 2 C -0.02 -1.19 4.86 84.86 0.41 -0.77 16 3 Si 0.92 44.17 29.58 68.60 2.03 46.20 16 4 H -0.30 -15.03 7.11 99.48 0.71 -14.33 16 5 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 6 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 7 C -0.23 -11.16 7.62 84.03 0.64 -10.52 16 8 H 0.05 2.56 6.75 -2.91 -0.02 2.54 16 9 N -0.59 -24.63 1.77 -673.57 -1.19 -25.82 16 10 C 0.19 8.09 4.70 86.61 0.41 8.50 16 11 C -0.13 -4.32 5.71 30.34 0.17 -4.14 16 12 C -0.10 -3.15 5.51 29.76 0.16 -2.98 16 13 C -0.10 -2.68 5.16 28.61 0.15 -2.53 16 14 C -0.13 -3.76 5.06 29.39 0.15 -3.61 16 15 C 0.17 5.94 2.19 45.99 0.10 6.04 16 16 H 0.05 1.81 8.06 -2.39 -0.02 1.79 16 17 C 0.13 4.52 4.52 86.38 0.39 4.91 16 18 N -0.67 -25.53 4.70 -465.72 -2.19 -27.72 16 19 C 0.56 20.93 7.81 86.87 0.68 21.61 16 20 O -0.57 -22.35 16.29 -3.78 -0.06 -22.41 16 21 C 0.14 4.60 6.74 42.05 0.28 4.88 16 22 C -0.12 -3.00 9.55 22.36 0.21 -2.78 16 23 C 0.01 0.22 10.16 22.35 0.23 0.44 16 24 C -0.04 -1.02 7.38 39.83 0.29 -0.73 16 25 N -0.25 -7.33 12.43 -52.29 -0.65 -7.98 16 26 N 0.01 0.18 13.28 37.02 0.49 0.67 16 27 N -0.39 -10.36 7.06 -55.41 -0.39 -10.75 16 28 H 0.47 10.07 8.96 -219.84 -1.97 8.10 16 29 C 0.20 6.32 8.56 134.30 1.15 7.47 16 30 N -0.45 -15.67 9.54 -182.08 -1.74 -17.40 16 31 H 0.24 12.87 8.31 -92.70 -0.77 12.10 16 32 H 0.00 0.03 8.02 -2.38 -0.02 0.01 16 33 H 0.04 1.81 6.46 -2.39 -0.02 1.80 16 34 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.06 1.75 7.31 -2.39 -0.02 1.74 16 36 H 0.04 1.60 7.49 -2.39 -0.02 1.58 16 37 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.06 1.48 7.35 -2.39 -0.02 1.47 16 40 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.08 1.87 8.11 -2.39 -0.02 1.85 16 42 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.05 2.04 6.84 -2.38 -0.02 2.02 16 44 H 0.42 17.26 7.39 -92.70 -0.68 16.58 16 45 H 0.18 3.86 7.61 -2.91 -0.02 3.84 16 46 H 0.20 2.58 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -61.38 370.06 0.36 -61.02 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: -1.61 Total: 26.23 kcal Atomic # 6 Polarization: 20.34 SS G_CDS: 5.43 Total: 25.77 kcal Atomic # 7 Polarization: -131.38 SS G_CDS: -5.43 Total: -136.80 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.06 Total: -22.41 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -61.38 0.36 -61.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968884855.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.653 kcal (2) G-P(sol) polarization free energy of solvation -61.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds