Wall clock time and date at job start Wed Apr 1 2020 04:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99970 * 2 1 4 4 H 1.48497 * 109.46869 * 269.99492 * 3 2 1 5 5 H 1.48496 * 109.47166 * 29.99348 * 3 2 1 6 6 H 1.48497 * 109.47188 * 150.00000 * 3 2 1 7 7 C 1.38810 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00308 * 164.50036 * 7 2 1 9 9 N 1.36942 * 119.99825 * 344.49957 * 7 2 1 10 10 C 1.47601 * 118.64170 * 331.70545 * 9 7 2 11 11 C 1.53950 * 112.14254 * 222.11054 * 10 9 7 12 12 C 1.50883 * 110.09261 * 40.56328 * 11 10 9 13 13 C 1.52570 * 109.34770 * 268.11167 * 12 11 10 14 14 C 1.47092 * 114.32994 * 85.02622 * 13 12 11 15 15 C 1.44582 * 118.64064 * 151.67774 * 9 7 2 16 16 H 1.08994 * 109.44907 * 209.31795 * 15 9 7 17 17 C 1.53000 * 109.44847 * 329.27040 * 15 9 7 18 18 N 1.46499 * 109.46891 * 304.99608 * 17 15 9 19 19 C 1.34778 * 119.99631 * 180.02562 * 18 17 15 20 20 O 1.21570 * 120.00376 * 359.97438 * 19 18 17 21 21 C 1.47720 * 119.99946 * 180.02562 * 19 18 17 22 22 C 1.40117 * 120.35270 * 359.97438 * 21 19 18 23 23 N 1.31262 * 121.15440 * 179.97438 * 22 21 19 24 24 C 1.32720 * 121.79472 * 0.02562 * 23 22 21 25 25 N 1.37119 * 133.39871 * 179.97438 * 24 23 22 26 26 H 0.96997 * 126.58981 * 0.03043 * 25 24 23 27 27 N 1.40190 * 106.81434 * 180.02562 * 25 24 23 28 28 N 1.28663 * 109.51500 * 359.97438 * 27 25 24 29 29 C 1.35339 * 109.99780 * 0.02562 * 28 27 25 30 30 C 1.39436 * 120.35445 * 179.71710 * 21 19 18 31 31 H 0.97001 * 119.99573 * 0.02562 * 1 2 3 32 32 H 1.09001 * 108.95140 * 342.79154 * 10 9 7 33 33 H 1.09002 * 108.95034 * 101.51582 * 10 9 7 34 34 H 1.09003 * 109.36792 * 160.74638 * 11 10 9 35 35 H 1.08997 * 109.37128 * 280.49684 * 11 10 9 36 36 H 1.08999 * 109.48944 * 28.07101 * 12 11 10 37 37 H 1.08997 * 109.49586 * 148.12241 * 12 11 10 38 38 H 1.08999 * 108.50880 * 206.27928 * 13 12 11 39 39 H 1.08998 * 108.50741 * 323.92842 * 13 12 11 40 40 H 1.08998 * 109.32921 * 176.92868 * 14 13 12 41 41 H 1.09007 * 109.32819 * 57.45352 * 14 13 12 42 42 H 1.09001 * 109.47004 * 184.99803 * 17 15 9 43 43 H 1.09000 * 109.47581 * 65.00053 * 17 15 9 44 44 H 0.96997 * 120.00451 * 0.02562 * 18 17 15 45 45 H 1.08001 * 119.42138 * 359.97438 * 22 21 19 46 46 H 1.08004 * 120.94805 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0608 -1.2193 -0.2494 9 7 1.3629 -2.3664 0.3180 10 6 0.2007 -2.3047 1.2258 11 6 0.2092 -3.4473 2.2576 12 6 1.6114 -3.6772 2.7649 13 6 2.2911 -4.7405 1.9075 14 6 2.9176 -4.2214 0.6820 15 6 1.8457 -3.6050 -0.2504 16 1 1.0152 -4.3025 -0.3590 17 6 2.4624 -3.3292 -1.6232 18 7 1.4841 -2.6405 -2.4686 19 6 1.8085 -2.2951 -3.7303 20 8 2.9131 -2.5546 -4.1667 21 6 0.8222 -1.6001 -4.5826 22 6 -0.4528 -1.2969 -4.0870 23 7 -1.3411 -0.6794 -4.8304 24 6 -1.0765 -0.3153 -6.0790 25 7 -1.8053 0.3247 -7.0482 26 1 -2.7175 0.6447 -6.9690 27 7 -0.9784 0.4278 -8.1756 28 7 0.1648 -0.1046 -7.9202 29 6 0.1804 -0.5822 -6.6540 30 6 1.1520 -1.2340 -5.8870 31 1 -0.4849 0.8401 -0.0004 32 1 0.2140 -1.3512 1.7537 33 1 -0.7134 -2.3695 0.6356 34 1 -0.4390 -3.1842 3.0936 35 1 -0.1580 -4.3603 1.7890 36 1 2.1764 -2.7470 2.7063 37 1 1.5728 -4.0147 3.8006 38 1 3.0580 -5.2306 2.5073 39 1 1.5466 -5.4847 1.6244 40 1 3.4227 -5.0356 0.1624 41 1 3.6485 -3.4571 0.9464 42 1 2.7460 -4.2724 -2.0902 43 1 3.3461 -2.7021 -1.5053 44 1 0.6028 -2.4331 -2.1203 45 1 -0.7092 -1.5761 -3.0757 46 1 2.1282 -1.4512 -6.2949 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968893190.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:22 Heat of formation + Delta-G solvation = 108.442707 kcal Electronic energy + Delta-G solvation = -30884.504606 eV Core-core repulsion = 26811.850052 eV Total energy + Delta-G solvation = -4072.654554 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.42611 -39.73612 -38.45981 -37.75399 -34.65668 -34.03824 -33.56579 -32.04551 -31.70418 -30.83498 -30.46553 -27.18457 -25.85091 -24.79886 -24.17847 -23.52112 -22.75106 -22.10268 -20.51051 -19.79680 -19.25439 -18.72450 -18.30978 -17.06440 -16.47358 -16.18835 -15.99303 -15.62851 -14.97547 -14.74787 -14.51531 -14.11144 -13.91874 -13.63346 -13.51546 -13.21970 -13.13616 -12.99102 -12.77053 -12.64130 -12.15370 -12.08301 -11.97768 -11.67365 -11.48117 -11.29712 -11.15640 -10.88926 -10.66071 -10.26630 -10.10841 -10.04646 -10.00996 -9.76235 -9.63354 -9.59346 -9.39544 -9.36835 -9.10133 -8.49676 -8.34627 -6.77901 -5.90885 -3.35184 0.14022 0.64768 1.90027 1.98444 2.99693 3.30841 3.39268 3.41900 3.43743 3.82191 3.89991 4.20348 4.22216 4.41133 4.63523 4.75308 5.11945 5.13315 5.27888 5.31782 5.39008 5.43102 5.59347 5.62367 5.81162 5.88417 5.95765 6.01506 6.09187 6.11564 6.24511 6.33779 6.50719 6.55347 6.55962 6.60477 6.63799 6.70413 6.79442 6.93100 7.02060 7.10023 7.33895 7.44039 7.58956 7.65653 7.75645 8.08895 8.34899 8.67305 9.12634 9.76913 10.22076 11.15520 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013292 B = 0.003533 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.989938 B = 7924.031965 C = 8636.972166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.015 3.985 3 Si 0.888 3.112 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.251 4.251 8 H 0.063 0.937 9 N -0.584 5.584 10 C 0.180 3.820 11 C -0.143 4.143 12 C -0.107 4.107 13 C -0.101 4.101 14 C -0.136 4.136 15 C 0.173 3.827 16 H 0.046 0.954 17 C 0.129 3.871 18 N -0.680 5.680 19 C 0.564 3.436 20 O -0.553 6.553 21 C -0.194 4.194 22 C 0.228 3.772 23 N -0.489 5.489 24 C 0.293 3.707 25 N -0.486 5.486 26 H 0.452 0.548 27 N 0.008 4.992 28 N -0.193 5.193 29 C -0.079 4.079 30 C 0.075 3.925 31 H 0.253 0.747 32 H 0.073 0.927 33 H 0.025 0.975 34 H 0.049 0.951 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.046 0.954 40 H 0.049 0.951 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.410 0.590 45 H 0.187 0.813 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.363 -5.831 -4.421 8.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.184 4.184 3 Si 0.718 3.282 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.381 4.381 8 H 0.081 0.919 9 N -0.307 5.307 10 C 0.056 3.944 11 C -0.182 4.182 12 C -0.145 4.145 13 C -0.139 4.139 14 C -0.177 4.177 15 C 0.064 3.936 16 H 0.064 0.936 17 C 0.005 3.995 18 N -0.329 5.329 19 C 0.348 3.652 20 O -0.433 6.433 21 C -0.203 4.203 22 C 0.055 3.945 23 N -0.203 5.203 24 C 0.048 3.952 25 N -0.212 5.212 26 H 0.300 0.700 27 N 0.026 4.974 28 N -0.075 5.075 29 C -0.205 4.205 30 C 0.044 3.956 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.043 0.957 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.248 0.752 45 H 0.204 0.796 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.425 -5.176 -5.890 8.557 hybrid contribution 0.049 0.987 1.064 1.452 sum -3.376 -4.189 -4.826 7.228 Atomic orbital electron populations 1.69999 1.04891 1.25524 1.54071 1.24883 0.95133 0.97835 1.00560 0.86523 0.79479 0.84423 0.77747 1.21573 1.21708 1.20560 1.19014 0.92332 0.84644 1.42093 0.91928 1.43741 1.34439 1.01631 1.50842 1.21000 0.88487 0.95543 0.89387 1.22072 0.96088 1.00472 0.99595 1.20949 0.97090 0.99807 0.96606 1.20287 0.99022 0.97919 0.96626 1.21373 0.99634 0.99810 0.96901 1.20524 0.94127 0.89456 0.89518 0.93599 1.21559 0.92465 0.95330 0.90184 1.45588 1.18640 1.57474 1.11201 1.17572 0.86311 0.79145 0.82127 1.90745 1.22136 1.56337 1.74112 1.20943 0.97156 1.06492 0.95711 1.23345 0.86728 0.86173 0.98216 1.66779 1.35868 1.15408 1.02222 1.19663 0.90177 0.94932 0.90421 1.47455 1.16404 1.48189 1.09113 0.69974 1.81662 0.95599 1.15629 1.04556 1.74836 1.12300 1.07519 1.12814 1.20376 0.96534 1.10220 0.93320 1.21042 0.97872 0.86478 0.90206 0.93639 0.90895 0.95686 0.93270 0.93772 0.90770 0.94230 0.94085 0.93512 0.93250 0.91777 0.92732 0.90978 0.75200 0.79629 0.81853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.89 11.13 55.49 0.62 -21.27 16 2 C 0.01 0.35 4.86 -17.43 -0.08 0.27 16 3 Si 0.89 20.38 29.58 -169.99 -5.03 15.35 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.25 -5.69 7.62 -15.06 -0.11 -5.80 16 8 H 0.06 1.50 6.74 -52.49 -0.35 1.14 16 9 N -0.58 -11.51 1.77 -164.46 -0.29 -11.80 16 10 C 0.18 3.57 4.66 -2.94 -0.01 3.56 16 11 C -0.14 -2.34 5.71 -27.30 -0.16 -2.50 16 12 C -0.11 -1.68 5.51 -28.01 -0.15 -1.84 16 13 C -0.10 -1.46 5.16 -29.79 -0.15 -1.61 16 14 C -0.14 -2.09 5.06 -28.58 -0.14 -2.23 16 15 C 0.17 2.90 2.19 -67.97 -0.15 2.75 16 16 H 0.05 0.75 8.06 -51.93 -0.42 0.33 16 17 C 0.13 2.19 4.52 -4.04 -0.02 2.17 16 18 N -0.68 -11.60 4.67 -61.29 -0.29 -11.89 16 19 C 0.56 9.83 7.77 -12.39 -0.10 9.73 16 20 O -0.55 -10.97 16.39 5.30 0.09 -10.88 16 21 C -0.19 -3.00 5.88 -104.87 -0.62 -3.62 16 22 C 0.23 3.40 10.69 -17.09 -0.18 3.22 16 23 N -0.49 -7.31 10.37 -12.03 -0.12 -7.44 16 24 C 0.29 4.21 8.49 -155.92 -1.32 2.89 16 25 N -0.49 -5.72 7.53 31.15 0.23 -5.49 16 26 H 0.45 3.67 8.96 -182.53 -1.64 2.03 16 27 N 0.01 0.11 13.82 60.35 0.83 0.95 16 28 N -0.19 -2.86 12.40 32.17 0.40 -2.46 16 29 C -0.08 -1.18 7.27 -84.74 -0.62 -1.80 16 30 C 0.08 1.10 9.75 -38.51 -0.38 0.73 16 31 H 0.25 6.26 8.31 -40.82 -0.34 5.92 16 32 H 0.07 1.67 6.47 -51.93 -0.34 1.34 16 33 H 0.03 0.53 8.02 -51.93 -0.42 0.11 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.04 0.68 7.31 -51.93 -0.38 0.30 16 36 H 0.07 1.36 7.48 -51.93 -0.39 0.97 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.65 7.35 -51.93 -0.38 0.26 16 40 H 0.05 0.67 8.11 -51.93 -0.42 0.25 16 41 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 1.38 6.84 -51.93 -0.36 1.03 16 44 H 0.41 7.03 6.12 -40.82 -0.25 6.78 16 45 H 0.19 2.68 6.39 -52.49 -0.34 2.34 16 46 H 0.16 2.23 7.71 -52.48 -0.40 1.82 16 LS Contribution 368.73 15.07 5.56 5.56 Total: -1.00 -26.58 368.73 -9.53 -36.10 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -7.32 Total: 7.36 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: -4.20 Total: 5.91 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: 1.38 Total: -59.40 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -26.58 -9.53 -36.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968893190.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.546 kcal (2) G-P(sol) polarization free energy of solvation -26.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds