Wall clock time and date at job start Wed Apr 1 2020 04:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 119.99724 * 2 1 4 4 H 1.48500 * 109.47136 * 274.37364 * 3 2 1 5 5 H 1.48495 * 109.47073 * 34.37431 * 3 2 1 6 6 H 1.48501 * 109.46639 * 154.37292 * 3 2 1 7 7 C 1.38811 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99914 * 164.14562 * 7 2 1 9 9 N 1.36932 * 119.99673 * 344.14266 * 7 2 1 10 10 C 1.47609 * 118.64695 * 331.93426 * 9 7 2 11 11 C 1.53942 * 112.14963 * 222.12053 * 10 9 7 12 12 C 1.50878 * 110.09170 * 40.55611 * 11 10 9 13 13 C 1.52567 * 109.35142 * 268.11434 * 12 11 10 14 14 C 1.47085 * 114.33085 * 85.03203 * 13 12 11 15 15 C 1.44583 * 118.64320 * 151.91997 * 9 7 2 16 16 H 1.08997 * 109.45286 * 209.31868 * 15 9 7 17 17 C 1.53004 * 109.44448 * 329.26385 * 15 9 7 18 18 N 1.46501 * 109.46939 * 304.99954 * 17 15 9 19 19 C 1.34773 * 120.00053 * 180.02562 * 18 17 15 20 20 O 1.21547 * 120.00208 * 0.02562 * 19 18 17 21 21 C 1.47875 * 120.00296 * 179.97438 * 19 18 17 22 22 C 1.39452 * 121.11524 * 0.02562 * 21 19 18 23 23 C 1.38620 * 119.37600 * 180.02562 * 22 21 19 24 24 N 1.31575 * 121.63705 * 0.02562 * 23 22 21 25 25 C 1.32213 * 121.86997 * 359.97438 * 24 23 22 26 26 N 1.37211 * 134.67581 * 180.02562 * 25 24 23 27 27 H 0.96999 * 125.86635 * 359.95588 * 26 25 24 28 28 N 1.28784 * 108.25998 * 180.21710 * 26 25 24 29 29 N 1.28696 * 111.75859 * 359.58987 * 28 26 25 30 30 C 1.34389 * 109.15150 * 0.41251 * 29 28 26 31 31 H 0.97000 * 119.99769 * 359.97438 * 1 2 3 32 32 H 1.08999 * 108.94249 * 342.80516 * 10 9 7 33 33 H 1.09000 * 108.94302 * 101.51773 * 10 9 7 34 34 H 1.08997 * 109.36676 * 160.75469 * 11 10 9 35 35 H 1.09005 * 109.36437 * 280.49462 * 11 10 9 36 36 H 1.08997 * 109.49199 * 28.08317 * 12 11 10 37 37 H 1.09005 * 109.48856 * 148.13143 * 12 11 10 38 38 H 1.08998 * 108.51122 * 206.28588 * 13 12 11 39 39 H 1.09003 * 108.51275 * 323.92953 * 13 12 11 40 40 H 1.08995 * 109.33324 * 176.93537 * 14 13 12 41 41 H 1.09001 * 109.33012 * 57.44775 * 14 13 12 42 42 H 1.09004 * 109.46979 * 185.00405 * 17 15 9 43 43 H 1.08994 * 109.47335 * 64.99771 * 17 15 9 44 44 H 0.96997 * 120.00260 * 0.02562 * 18 17 15 45 45 H 1.07996 * 120.30861 * 359.97438 * 22 21 19 46 46 H 1.08006 * 119.17982 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4052 2.0999 -1.3960 5 1 1.4969 2.6242 0.7905 6 1 3.5909 1.4153 0.6056 7 6 2.0103 -1.2021 -0.0005 8 1 3.0595 -1.2198 -0.2561 9 7 1.3647 -2.3655 0.3230 10 6 0.2042 -2.3014 1.2329 11 6 0.2158 -3.4395 2.2695 12 6 1.6193 -3.6659 2.7749 13 6 2.2983 -4.7321 1.9206 14 6 2.9220 -4.2176 0.6919 15 6 1.8477 -3.6061 -0.2410 16 1 1.0177 -4.3049 -0.3452 17 6 2.4615 -3.3356 -1.6162 18 7 1.4808 -2.6513 -2.4626 19 6 1.8024 -2.3108 -3.7263 20 8 2.9059 -2.5719 -4.1640 21 6 0.8124 -1.6207 -4.5809 22 6 -0.4603 -1.3104 -4.1029 23 6 -1.3603 -0.6633 -4.9353 24 7 -1.0447 -0.3332 -6.1692 25 6 0.1451 -0.5998 -6.6805 26 7 0.7431 -0.3833 -7.8963 27 1 0.3346 0.0512 -8.6613 28 7 1.9381 -0.8612 -7.8490 29 7 2.2010 -1.3755 -6.6990 30 6 1.1232 -1.2551 -5.9053 31 1 -0.4850 0.8401 0.0004 32 1 0.2176 -1.3456 1.7566 33 1 -0.7109 -2.3695 0.6446 34 1 -0.4311 -3.1736 3.1055 35 1 -0.1514 -4.3549 1.8053 36 1 2.1832 -2.7354 2.7114 37 1 1.5829 -3.9992 3.8121 38 1 3.0668 -5.2189 2.5211 39 1 1.5541 -5.4783 1.6422 40 1 3.4268 -5.0334 0.1746 41 1 3.6525 -3.4515 0.9516 42 1 2.7451 -4.2805 -2.0798 43 1 3.3447 -2.7070 -1.5026 44 1 0.6001 -2.4433 -2.1135 45 1 -0.7424 -1.5726 -3.0939 46 1 -2.3450 -0.4242 -4.5616 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968944499.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:34 Heat of formation + Delta-G solvation = 115.565335 kcal Electronic energy + Delta-G solvation = -31184.190366 eV Core-core repulsion = 27111.844672 eV Total energy + Delta-G solvation = -4072.345694 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.35609 -39.66203 -38.63995 -37.90644 -34.58577 -34.10018 -33.54608 -32.33230 -31.32813 -30.77276 -30.67679 -27.22039 -25.92619 -25.10577 -23.82020 -23.54522 -23.14049 -21.99933 -20.55997 -19.82467 -19.25595 -18.60720 -18.42105 -17.26960 -16.57499 -16.33142 -15.66963 -15.32305 -15.20666 -14.66951 -14.48607 -14.43161 -14.08129 -13.62795 -13.53584 -13.23637 -13.06833 -12.80593 -12.66937 -12.30304 -12.13603 -11.98341 -11.63165 -11.61393 -11.38548 -11.24945 -11.13182 -10.87776 -10.64089 -10.24900 -10.07380 -10.03952 -9.99043 -9.74908 -9.61757 -9.59162 -9.25233 -9.23022 -9.03911 -8.48178 -8.27223 -6.76785 -5.90074 -3.33261 0.12627 0.93081 2.13007 2.23903 3.11323 3.32062 3.40217 3.44227 3.49346 3.81814 3.92108 4.29269 4.42576 4.49294 4.71220 4.87866 5.14714 5.29034 5.31000 5.39812 5.45740 5.50189 5.60600 5.63006 5.82902 5.88081 5.97304 6.03984 6.10900 6.24049 6.27712 6.35106 6.52592 6.57370 6.58013 6.62232 6.65559 6.72363 6.80442 6.95054 7.05657 7.14653 7.34439 7.48082 7.59106 7.77430 8.14873 8.19504 8.36106 8.76691 9.14108 9.78250 10.23278 11.16616 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012950 B = 0.003815 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.562584 B = 7337.555720 C = 8066.586373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.015 3.985 3 Si 0.888 3.112 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.248 4.248 8 H 0.063 0.937 9 N -0.584 5.584 10 C 0.181 3.819 11 C -0.143 4.143 12 C -0.107 4.107 13 C -0.101 4.101 14 C -0.136 4.136 15 C 0.173 3.827 16 H 0.046 0.954 17 C 0.129 3.871 18 N -0.678 5.678 19 C 0.546 3.454 20 O -0.525 6.525 21 C 0.000 4.000 22 C -0.130 4.130 23 C 0.165 3.835 24 N -0.468 5.468 25 C 0.210 3.790 26 N -0.411 5.411 27 H 0.455 0.545 28 N -0.009 5.009 29 N -0.207 5.207 30 C 0.001 3.999 31 H 0.253 0.747 32 H 0.073 0.927 33 H 0.025 0.975 34 H 0.049 0.951 35 H 0.043 0.957 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.046 0.954 40 H 0.049 0.951 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.071 0.929 44 H 0.411 0.589 45 H 0.167 0.833 46 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.455 -4.787 -5.239 8.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.184 4.184 3 Si 0.718 3.282 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.378 4.378 8 H 0.081 0.919 9 N -0.306 5.306 10 C 0.056 3.944 11 C -0.182 4.182 12 C -0.144 4.144 13 C -0.138 4.138 14 C -0.177 4.177 15 C 0.064 3.936 16 H 0.064 0.936 17 C 0.005 3.995 18 N -0.329 5.329 19 C 0.329 3.671 20 O -0.402 6.402 21 C -0.017 4.017 22 C -0.153 4.153 23 C -0.007 4.007 24 N -0.182 5.182 25 C -0.033 4.033 26 N -0.141 5.141 27 H 0.302 0.698 28 N 0.008 4.992 29 N -0.083 5.083 30 C -0.128 4.128 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.043 0.957 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.248 0.752 45 H 0.184 0.816 46 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -3.971 -4.690 -6.826 9.185 hybrid contribution -0.625 1.332 0.831 1.690 sum -4.596 -3.358 -5.995 8.267 Atomic orbital electron populations 1.70008 1.04878 1.25378 1.54403 1.24854 0.95144 0.97796 1.00614 0.86511 0.79600 0.84490 0.77619 1.21676 1.21655 1.20516 1.19038 0.92476 0.84697 1.41599 0.91938 1.43743 1.34598 1.01533 1.50746 1.20993 0.88485 0.95602 0.89291 1.22069 0.96090 1.00467 0.99591 1.20948 0.97079 0.99811 0.96612 1.20285 0.99028 0.97912 0.96614 1.21368 0.99642 0.99851 0.96865 1.20522 0.94112 0.89419 0.89516 0.93616 1.21555 0.92443 0.95401 0.90121 1.45578 1.18637 1.57740 1.10934 1.17773 0.86777 0.80159 0.82349 1.90810 1.21547 1.54149 1.73687 1.19839 0.94683 0.96668 0.90489 1.22600 0.92349 0.98031 1.02360 1.22856 0.99930 0.91618 0.86274 1.66317 1.16183 1.20537 1.15170 1.19863 0.93190 1.01917 0.88338 1.44610 1.10869 1.46385 1.12205 0.69796 1.78210 0.96534 1.07711 1.16765 1.75534 1.21542 1.15469 0.95754 1.20136 0.92613 1.03962 0.96059 0.93740 0.90885 0.95732 0.93260 0.93780 0.90774 0.94222 0.94075 0.93517 0.93232 0.91770 0.92771 0.91034 0.75173 0.81591 0.80117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.76 11.14 55.49 0.62 -21.15 16 2 C 0.01 0.35 4.85 -17.43 -0.08 0.27 16 3 Si 0.89 20.63 29.58 -169.99 -5.03 15.60 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.25 -5.75 7.63 -15.06 -0.11 -5.87 16 8 H 0.06 1.55 6.74 -52.49 -0.35 1.19 16 9 N -0.58 -11.71 1.77 -164.46 -0.29 -12.01 16 10 C 0.18 3.60 4.66 -2.94 -0.01 3.58 16 11 C -0.14 -2.35 5.71 -27.31 -0.16 -2.51 16 12 C -0.11 -1.70 5.51 -28.02 -0.15 -1.86 16 13 C -0.10 -1.49 5.16 -29.79 -0.15 -1.64 16 14 C -0.14 -2.16 5.06 -28.58 -0.14 -2.31 16 15 C 0.17 3.01 2.19 -67.97 -0.15 2.86 16 16 H 0.05 0.77 8.06 -51.93 -0.42 0.35 16 17 C 0.13 2.34 4.52 -4.04 -0.02 2.32 16 18 N -0.68 -12.41 4.68 -61.24 -0.29 -12.69 16 19 C 0.55 10.71 7.79 -12.32 -0.10 10.61 16 20 O -0.52 -11.94 16.27 5.32 0.09 -11.86 16 21 C 0.00 -0.01 5.92 -104.51 -0.62 -0.63 16 22 C -0.13 -1.81 9.61 -38.99 -0.37 -2.19 16 23 C 0.17 1.98 11.14 -17.52 -0.20 1.79 16 24 N -0.47 -6.32 10.35 -12.38 -0.13 -6.45 16 25 C 0.21 3.13 8.56 -156.20 -1.34 1.79 16 26 N -0.41 -5.09 7.06 31.11 0.22 -4.87 16 27 H 0.45 3.51 8.96 -190.25 -1.71 1.80 16 28 N -0.01 -0.14 13.29 60.35 0.80 0.66 16 29 N -0.21 -3.89 11.92 32.23 0.38 -3.51 16 30 C 0.00 0.02 6.97 -84.72 -0.59 -0.57 16 31 H 0.25 6.12 8.31 -40.82 -0.34 5.78 16 32 H 0.07 1.68 6.46 -51.93 -0.34 1.34 16 33 H 0.02 0.52 8.02 -51.93 -0.42 0.10 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.04 0.69 7.31 -51.93 -0.38 0.31 16 36 H 0.07 1.38 7.48 -51.93 -0.39 0.99 16 37 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.66 7.35 -51.93 -0.38 0.28 16 40 H 0.05 0.70 8.11 -51.93 -0.42 0.28 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 1.46 6.83 -51.93 -0.35 1.10 16 44 H 0.41 7.36 6.23 -40.82 -0.25 7.11 16 45 H 0.17 2.19 6.53 -52.49 -0.34 1.85 16 46 H 0.18 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 367.83 15.07 5.54 5.54 Total: -1.00 -29.28 367.83 -9.71 -38.99 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -7.42 Total: 6.09 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -4.20 Total: 5.65 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: 1.32 Total: -60.01 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.28 -9.71 -38.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968944499.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.551 kcal (2) G-P(sol) polarization free energy of solvation -29.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds