Wall clock time and date at job start Wed Apr 1 2020 04:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 119.99724 * 2 1 4 4 H 1.48500 * 109.47136 * 274.37364 * 3 2 1 5 5 H 1.48495 * 109.47073 * 34.37431 * 3 2 1 6 6 H 1.48501 * 109.46639 * 154.37292 * 3 2 1 7 7 C 1.38811 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99914 * 164.14562 * 7 2 1 9 9 N 1.36932 * 119.99673 * 344.14266 * 7 2 1 10 10 C 1.47609 * 118.64695 * 331.93426 * 9 7 2 11 11 C 1.53942 * 112.14963 * 222.12053 * 10 9 7 12 12 C 1.50878 * 110.09170 * 40.55611 * 11 10 9 13 13 C 1.52567 * 109.35142 * 268.11434 * 12 11 10 14 14 C 1.47085 * 114.33085 * 85.03203 * 13 12 11 15 15 C 1.44583 * 118.64320 * 151.91997 * 9 7 2 16 16 H 1.08997 * 109.45286 * 209.31868 * 15 9 7 17 17 C 1.53004 * 109.44448 * 329.26385 * 15 9 7 18 18 N 1.46501 * 109.46939 * 304.99954 * 17 15 9 19 19 C 1.34773 * 120.00053 * 180.02562 * 18 17 15 20 20 O 1.21547 * 120.00208 * 0.02562 * 19 18 17 21 21 C 1.47875 * 120.00296 * 179.97438 * 19 18 17 22 22 C 1.39452 * 121.11524 * 0.02562 * 21 19 18 23 23 C 1.38620 * 119.37600 * 180.02562 * 22 21 19 24 24 N 1.31575 * 121.63705 * 0.02562 * 23 22 21 25 25 C 1.32213 * 121.86997 * 359.97438 * 24 23 22 26 26 N 1.37211 * 134.67581 * 180.02562 * 25 24 23 27 27 H 0.96999 * 125.86635 * 359.95588 * 26 25 24 28 28 N 1.28784 * 108.25998 * 180.21710 * 26 25 24 29 29 N 1.28696 * 111.75859 * 359.58987 * 28 26 25 30 30 C 1.34389 * 109.15150 * 0.41251 * 29 28 26 31 31 H 0.97000 * 119.99769 * 359.97438 * 1 2 3 32 32 H 1.08999 * 108.94249 * 342.80516 * 10 9 7 33 33 H 1.09000 * 108.94302 * 101.51773 * 10 9 7 34 34 H 1.08997 * 109.36676 * 160.75469 * 11 10 9 35 35 H 1.09005 * 109.36437 * 280.49462 * 11 10 9 36 36 H 1.08997 * 109.49199 * 28.08317 * 12 11 10 37 37 H 1.09005 * 109.48856 * 148.13143 * 12 11 10 38 38 H 1.08998 * 108.51122 * 206.28588 * 13 12 11 39 39 H 1.09003 * 108.51275 * 323.92953 * 13 12 11 40 40 H 1.08995 * 109.33324 * 176.93537 * 14 13 12 41 41 H 1.09001 * 109.33012 * 57.44775 * 14 13 12 42 42 H 1.09004 * 109.46979 * 185.00405 * 17 15 9 43 43 H 1.08994 * 109.47335 * 64.99771 * 17 15 9 44 44 H 0.96997 * 120.00260 * 0.02562 * 18 17 15 45 45 H 1.07996 * 120.30861 * 359.97438 * 22 21 19 46 46 H 1.08006 * 119.17982 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4052 2.0999 -1.3960 5 1 1.4969 2.6242 0.7905 6 1 3.5909 1.4153 0.6056 7 6 2.0103 -1.2021 -0.0005 8 1 3.0595 -1.2198 -0.2561 9 7 1.3647 -2.3655 0.3230 10 6 0.2042 -2.3014 1.2329 11 6 0.2158 -3.4395 2.2695 12 6 1.6193 -3.6659 2.7749 13 6 2.2983 -4.7321 1.9206 14 6 2.9220 -4.2176 0.6919 15 6 1.8477 -3.6061 -0.2410 16 1 1.0177 -4.3049 -0.3452 17 6 2.4615 -3.3356 -1.6162 18 7 1.4808 -2.6513 -2.4626 19 6 1.8024 -2.3108 -3.7263 20 8 2.9059 -2.5719 -4.1640 21 6 0.8124 -1.6207 -4.5809 22 6 -0.4603 -1.3104 -4.1029 23 6 -1.3603 -0.6633 -4.9353 24 7 -1.0447 -0.3332 -6.1692 25 6 0.1451 -0.5998 -6.6805 26 7 0.7431 -0.3833 -7.8963 27 1 0.3346 0.0512 -8.6613 28 7 1.9381 -0.8612 -7.8490 29 7 2.2010 -1.3755 -6.6990 30 6 1.1232 -1.2551 -5.9053 31 1 -0.4850 0.8401 0.0004 32 1 0.2176 -1.3456 1.7566 33 1 -0.7109 -2.3695 0.6446 34 1 -0.4311 -3.1736 3.1055 35 1 -0.1514 -4.3549 1.8053 36 1 2.1832 -2.7354 2.7114 37 1 1.5829 -3.9992 3.8121 38 1 3.0668 -5.2189 2.5211 39 1 1.5541 -5.4783 1.6422 40 1 3.4268 -5.0334 0.1746 41 1 3.6525 -3.4515 0.9516 42 1 2.7451 -4.2805 -2.0798 43 1 3.3447 -2.7070 -1.5026 44 1 0.6001 -2.4433 -2.1135 45 1 -0.7424 -1.5726 -3.0939 46 1 -2.3450 -0.4242 -4.5616 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968944499.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:33 Heat of formation + Delta-G solvation = 96.781186 kcal Electronic energy + Delta-G solvation = -31185.004908 eV Core-core repulsion = 27111.844672 eV Total energy + Delta-G solvation = -4073.160236 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.53120 -41.04582 -39.93756 -39.32831 -36.03421 -35.32293 -35.19699 -33.66731 -32.63734 -32.37259 -31.88215 -28.72328 -27.42762 -26.37666 -25.15445 -24.96650 -24.45139 -23.33492 -21.94507 -21.17629 -20.74242 -19.92545 -19.63662 -18.54365 -17.92377 -17.75440 -17.24352 -16.73699 -16.53914 -16.18731 -15.92359 -15.73456 -15.62003 -15.15350 -14.95678 -14.52435 -14.40390 -14.17894 -13.89765 -13.66803 -13.52803 -13.33200 -13.14362 -12.90233 -12.81105 -12.79592 -12.72641 -12.59745 -12.35096 -11.97633 -11.49742 -11.41119 -11.33839 -11.25663 -11.15110 -10.92906 -10.60012 -10.38649 -10.30012 -10.25941 -9.79086 -8.48896 -7.75725 -5.16339 -1.06996 -0.20094 0.98578 1.09725 1.39906 1.47292 1.52186 1.80117 2.13853 2.55527 2.58697 2.72034 3.15145 3.34086 3.39002 3.51787 3.65921 3.74437 4.07947 4.11759 4.19599 4.30654 4.35395 4.38743 4.49347 4.55290 4.66864 4.72336 4.77652 4.87839 5.07157 5.12555 5.18338 5.19555 5.29772 5.32323 5.44036 5.48298 5.59830 5.63536 5.66231 5.74506 5.81371 5.86855 5.98122 6.38865 6.53364 6.66804 6.99113 7.27686 7.33291 8.06109 8.43964 9.27349 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012950 B = 0.003815 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.562584 B = 7337.555720 C = 8066.586373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.013 4.013 3 Si 0.915 3.085 4 H -0.305 1.305 5 H -0.291 1.291 6 H -0.288 1.288 7 C -0.233 4.233 8 H 0.042 0.958 9 N -0.587 5.587 10 C 0.189 3.811 11 C -0.133 4.133 12 C -0.104 4.104 13 C -0.100 4.100 14 C -0.130 4.130 15 C 0.175 3.825 16 H 0.065 0.935 17 C 0.132 3.868 18 N -0.672 5.672 19 C 0.542 3.458 20 O -0.567 6.567 21 C -0.035 4.035 22 C -0.110 4.110 23 C 0.178 3.822 24 N -0.459 5.459 25 C 0.207 3.793 26 N -0.380 5.380 27 H 0.475 0.525 28 N -0.008 5.008 29 N -0.257 5.257 30 C -0.025 4.025 31 H 0.249 0.751 32 H 0.038 0.962 33 H 0.014 0.986 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.040 0.960 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.039 0.961 42 H 0.069 0.931 43 H 0.041 0.959 44 H 0.413 0.587 45 H 0.175 0.825 46 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.729 -5.941 -4.882 10.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.211 4.211 3 Si 0.748 3.252 4 H -0.234 1.234 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.364 4.364 8 H 0.059 0.941 9 N -0.309 5.309 10 C 0.065 3.935 11 C -0.172 4.172 12 C -0.142 4.142 13 C -0.137 4.137 14 C -0.170 4.170 15 C 0.067 3.933 16 H 0.082 0.918 17 C 0.007 3.993 18 N -0.322 5.322 19 C 0.328 3.672 20 O -0.447 6.447 21 C -0.051 4.051 22 C -0.134 4.134 23 C 0.006 3.994 24 N -0.173 5.173 25 C -0.036 4.036 26 N -0.115 5.115 27 H 0.327 0.673 28 N 0.009 4.991 29 N -0.133 5.133 30 C -0.154 4.154 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.032 0.968 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.058 0.942 42 H 0.087 0.913 43 H 0.060 0.940 44 H 0.251 0.749 45 H 0.193 0.807 46 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -6.248 -5.849 -6.482 10.736 hybrid contribution 0.047 1.707 0.716 1.852 sum -6.201 -4.142 -5.766 9.427 Atomic orbital electron populations 1.70032 1.04648 1.24953 1.55483 1.25031 0.95584 0.98422 1.02014 0.86102 0.78808 0.83969 0.76352 1.23369 1.21714 1.21436 1.18879 0.91597 0.85920 1.39981 0.94061 1.43764 1.34409 1.01542 1.51195 1.20810 0.87681 0.95536 0.89516 1.21953 0.96841 0.99553 0.98875 1.20912 0.96276 0.98786 0.98234 1.20267 0.99856 0.97737 0.95875 1.21296 0.98632 0.99737 0.97371 1.20662 0.95034 0.88470 0.89091 0.91751 1.21546 0.91530 0.95359 0.90861 1.45560 1.18604 1.57402 1.10644 1.18190 0.86779 0.79630 0.82644 1.90771 1.23405 1.55989 1.74527 1.19774 0.95687 0.98976 0.90625 1.22813 0.91148 0.96586 1.02824 1.23654 1.01060 0.89509 0.85203 1.66516 1.14994 1.20086 1.15671 1.19954 0.93168 1.01857 0.88614 1.44604 1.09851 1.44733 1.12265 0.67278 1.78101 0.97502 1.07530 1.15945 1.75487 1.23106 1.17753 0.96957 1.20391 0.93292 1.05110 0.96654 0.94158 0.94367 0.96839 0.92128 0.91969 0.94065 0.92123 0.92327 0.91785 0.91057 0.94213 0.91319 0.94014 0.74862 0.80724 0.75317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -43.61 11.14 21.65 0.24 -43.37 16 2 C -0.01 -0.65 4.85 84.86 0.41 -0.24 16 3 Si 0.92 43.09 29.58 68.60 2.03 45.12 16 4 H -0.31 -15.07 7.11 99.48 0.71 -14.37 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 7 C -0.23 -10.97 7.63 84.03 0.64 -10.33 16 8 H 0.04 2.13 6.74 -2.91 -0.02 2.11 16 9 N -0.59 -23.32 1.77 -674.23 -1.20 -24.52 16 10 C 0.19 7.34 4.66 86.49 0.40 7.74 16 11 C -0.13 -4.04 5.71 30.22 0.17 -3.87 16 12 C -0.10 -3.08 5.51 29.76 0.16 -2.92 16 13 C -0.10 -2.63 5.16 28.61 0.15 -2.48 16 14 C -0.13 -3.89 5.06 29.39 0.15 -3.74 16 15 C 0.18 5.88 2.19 45.99 0.10 5.98 16 16 H 0.06 1.98 8.06 -2.39 -0.02 1.96 16 17 C 0.13 4.78 4.52 86.38 0.39 5.17 16 18 N -0.67 -24.82 4.68 -465.94 -2.18 -27.00 16 19 C 0.54 21.92 7.79 86.80 0.68 22.60 16 20 O -0.57 -27.04 16.27 -3.86 -0.06 -27.11 16 21 C -0.03 -1.21 5.92 -19.79 -0.12 -1.33 16 22 C -0.11 -2.90 9.61 22.65 0.22 -2.69 16 23 C 0.18 3.70 11.14 84.82 0.94 4.65 16 24 N -0.46 -11.14 10.35 -193.09 -2.00 -13.14 16 25 C 0.21 5.90 8.56 134.17 1.15 7.05 16 26 N -0.38 -8.98 7.06 -55.47 -0.39 -9.37 16 27 H 0.47 6.41 8.96 -219.83 -1.97 4.43 16 28 N -0.01 -0.25 13.29 37.02 0.49 0.25 16 29 N -0.26 -9.98 11.92 -51.93 -0.62 -10.60 16 30 C -0.02 -0.90 6.97 40.06 0.28 -0.62 16 31 H 0.25 11.99 8.31 -92.71 -0.77 11.22 16 32 H 0.04 1.75 6.46 -2.39 -0.02 1.73 16 33 H 0.01 0.55 8.02 -2.39 -0.02 0.53 16 34 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.06 1.69 7.31 -2.38 -0.02 1.67 16 36 H 0.04 1.49 7.48 -2.39 -0.02 1.47 16 37 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.06 1.51 7.35 -2.39 -0.02 1.49 16 40 H 0.07 1.84 8.11 -2.39 -0.02 1.83 16 41 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 43 H 0.04 1.77 6.83 -2.39 -0.02 1.75 16 44 H 0.41 14.65 6.23 -92.71 -0.58 14.07 16 45 H 0.18 4.28 6.53 -2.91 -0.02 4.26 16 46 H 0.23 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -66.47 367.83 0.55 -65.93 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -1.50 Total: 18.83 kcal Atomic # 6 Polarization: 19.26 SS G_CDS: 5.73 Total: 24.99 kcal Atomic # 7 Polarization: -122.11 SS G_CDS: -5.65 Total: -127.76 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.06 Total: -27.11 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -66.47 0.55 -65.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968944499.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.707 kcal (2) G-P(sol) polarization free energy of solvation -66.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds