Wall clock time and date at job start Wed Apr 1 2020 04:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86804 * 119.99908 * 2 1 4 4 H 1.48497 * 109.47116 * 239.99739 * 3 2 1 5 5 H 1.48495 * 109.47359 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47044 * 120.00128 * 3 2 1 7 7 C 1.38806 * 120.00287 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00617 * 194.57795 * 7 2 1 9 9 N 1.36937 * 119.99988 * 14.58186 * 7 2 1 10 10 C 1.47614 * 118.64287 * 27.77195 * 9 7 2 11 11 C 1.53936 * 112.14614 * 137.86449 * 10 9 7 12 12 C 1.50884 * 110.09706 * 319.44144 * 11 10 9 13 13 C 1.52567 * 109.34822 * 91.88527 * 12 11 10 14 14 C 1.47050 * 114.29719 * 274.94095 * 13 12 11 15 15 C 1.44584 * 118.64475 * 207.75635 * 9 7 2 16 16 H 1.08997 * 109.44889 * 150.69944 * 15 9 7 17 17 C 1.52998 * 109.44682 * 30.75276 * 15 9 7 18 18 N 1.46500 * 109.47265 * 54.94945 * 17 15 9 19 19 C 1.34777 * 119.99999 * 180.27247 * 18 17 15 20 20 O 1.21565 * 119.99514 * 359.72788 * 19 18 17 21 21 C 1.47818 * 120.00069 * 179.72291 * 19 18 17 22 22 C 1.41582 * 120.37356 * 0.02562 * 21 19 18 23 23 C 1.34821 * 120.11133 * 179.97438 * 22 21 19 24 24 N 1.36053 * 120.83080 * 359.97438 * 23 22 21 25 25 N 1.40251 * 133.73203 * 179.97438 * 24 23 22 26 26 N 1.28970 * 107.02169 * 180.02562 * 25 24 23 27 27 N 1.28544 * 110.84655 * 0.02562 * 26 25 24 28 28 C 1.32621 * 110.17973 * 359.97438 * 27 26 25 29 29 C 1.38458 * 120.37158 * 179.72278 * 21 19 18 30 30 H 0.97008 * 119.99997 * 359.97438 * 1 2 3 31 31 H 1.08996 * 108.94475 * 258.55779 * 10 9 7 32 32 H 1.09004 * 108.94227 * 17.17772 * 10 9 7 33 33 H 1.09001 * 109.36589 * 79.63232 * 11 10 9 34 34 H 1.08995 * 109.37028 * 199.37554 * 11 10 9 35 35 H 1.09000 * 109.49229 * 211.84808 * 12 11 10 36 36 H 1.09001 * 109.48963 * 331.92668 * 12 11 10 37 37 H 1.08997 * 108.51350 * 36.23109 * 13 12 11 38 38 H 1.08999 * 108.51471 * 153.87639 * 13 12 11 39 39 H 1.08998 * 109.36903 * 302.59969 * 14 13 12 40 40 H 1.08997 * 109.29316 * 183.11503 * 14 13 12 41 41 H 1.09000 * 109.46871 * 294.94631 * 17 15 9 42 42 H 1.08999 * 109.46791 * 174.94971 * 17 15 9 43 43 H 0.96998 * 120.00089 * 0.02562 * 18 17 15 44 44 H 1.07997 * 119.94134 * 359.97438 * 22 21 19 45 45 H 1.07999 * 119.58011 * 179.97438 * 23 22 21 46 46 H 1.07993 * 120.52341 * 0.02562 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0641 -1.2171 0.2359 9 7 1.3587 -2.3690 -0.2975 10 6 0.1769 -2.3140 -1.1803 11 6 0.1657 -3.4608 -2.2071 12 6 1.5572 -3.6899 -2.7437 13 6 2.2578 -4.7479 -1.8967 14 6 2.9097 -4.2214 -0.6883 15 6 1.8568 -3.6042 0.2652 16 1 1.0306 -4.3032 0.3949 17 6 2.5028 -3.3214 1.6230 18 7 1.5420 -2.6303 2.4864 19 6 1.8952 -2.2734 3.7371 20 8 3.0095 -2.5293 4.1504 21 6 0.9279 -1.5707 4.6063 22 6 -0.3720 -1.2691 4.1331 23 6 -1.2503 -0.6285 4.9305 24 7 -0.9062 -0.2633 6.1951 25 7 -1.5827 0.3958 7.2319 26 7 -0.7638 0.4774 8.2250 27 7 0.3662 -0.0604 7.9315 28 6 0.3393 -0.5348 6.6933 29 6 1.2807 -1.2055 5.8944 30 1 -0.4850 0.8401 0.0004 31 1 -0.7240 -2.3766 -0.5699 32 1 0.1765 -1.3626 -1.7122 33 1 -0.1912 -4.3722 -1.7273 34 1 -0.4993 -3.2019 -3.0310 35 1 1.4969 -4.0323 -3.7767 36 1 2.1212 -2.7581 -2.7013 37 1 1.5220 -5.4940 -1.5968 38 1 3.0145 -5.2370 -2.5101 39 1 3.6323 -3.4561 -0.9716 40 1 3.4284 -5.0321 -0.1767 41 1 3.3827 -2.6934 1.4829 42 1 2.7980 -4.2621 2.0878 43 1 0.6528 -2.4265 2.1568 44 1 -0.6605 -1.5528 3.1318 45 1 -2.2395 -0.4023 4.5607 46 1 2.2652 -1.4293 6.2777 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968974278.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:40 Heat of formation + Delta-G solvation = 133.718674 kcal Electronic energy + Delta-G solvation = -30934.204309 eV Core-core repulsion = 26862.645803 eV Total energy + Delta-G solvation = -4071.558506 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.42704 -39.95691 -38.55011 -37.86976 -34.79162 -34.01390 -33.68736 -32.51709 -31.61773 -30.83485 -30.55415 -27.48549 -26.08208 -24.87174 -24.78748 -23.61497 -22.88406 -22.28353 -20.72846 -19.89095 -19.34303 -18.63356 -18.01997 -17.13476 -16.92378 -16.15268 -15.74712 -15.54394 -15.15281 -14.84393 -14.64446 -14.50975 -14.19130 -13.71020 -13.61050 -13.37801 -13.21089 -13.09526 -12.88921 -12.55752 -12.23683 -12.14565 -11.97766 -11.73850 -11.52272 -11.37930 -11.23219 -11.13812 -10.95441 -10.75980 -10.34160 -10.21287 -10.16493 -10.11667 -9.93675 -9.83034 -9.72607 -9.59292 -8.76257 -8.58454 -8.50632 -6.88673 -6.00314 -3.44889 0.01868 0.33785 1.61065 2.02528 2.55535 3.13680 3.25661 3.31212 3.36102 3.50509 3.73219 4.02120 4.30146 4.32998 4.57454 4.77081 5.00570 5.04692 5.18788 5.20923 5.31525 5.34354 5.38429 5.51896 5.54703 5.71522 5.75657 5.83239 5.86621 5.92125 6.00746 6.13641 6.22321 6.27204 6.42190 6.46817 6.53298 6.54799 6.63051 6.72590 6.84466 6.87417 7.00859 7.26383 7.51620 7.65924 7.88861 8.25103 8.26002 8.46389 9.03264 9.67328 10.12040 11.05838 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.003527 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.062943 B = 7937.546916 C = 8655.404709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.015 3.985 3 Si 0.889 3.111 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.251 4.251 8 H 0.063 0.937 9 N -0.585 5.585 10 C 0.180 3.820 11 C -0.143 4.143 12 C -0.107 4.107 13 C -0.101 4.101 14 C -0.136 4.136 15 C 0.173 3.827 16 H 0.047 0.953 17 C 0.127 3.873 18 N -0.673 5.673 19 C 0.553 3.447 20 O -0.543 6.543 21 C -0.054 4.054 22 C -0.098 4.098 23 C 0.102 3.898 24 N -0.292 5.292 25 N -0.116 5.116 26 N -0.014 5.014 27 N -0.320 5.320 28 C 0.237 3.763 29 C -0.037 4.037 30 H 0.254 0.746 31 H 0.024 0.976 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.049 0.951 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.047 0.953 38 H 0.041 0.959 39 H 0.064 0.936 40 H 0.049 0.951 41 H 0.074 0.926 42 H 0.057 0.943 43 H 0.412 0.588 44 H 0.180 0.820 45 H 0.187 0.813 46 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.341 -7.562 0.935 7.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.184 4.184 3 Si 0.719 3.281 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.381 4.381 8 H 0.081 0.919 9 N -0.307 5.307 10 C 0.056 3.944 11 C -0.182 4.182 12 C -0.145 4.145 13 C -0.139 4.139 14 C -0.177 4.177 15 C 0.064 3.936 16 H 0.065 0.935 17 C 0.003 3.997 18 N -0.322 5.322 19 C 0.337 3.663 20 O -0.422 6.422 21 C -0.066 4.066 22 C -0.122 4.122 23 C -0.025 4.025 24 N -0.072 5.072 25 N -0.099 5.099 26 N -0.007 5.007 27 N -0.182 5.182 28 C -0.016 4.016 29 C -0.061 4.061 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.250 0.750 44 H 0.197 0.803 45 H 0.204 0.796 46 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -2.344 -6.858 2.526 7.675 hybrid contribution 0.164 0.855 -1.276 1.545 sum -2.180 -6.003 1.249 6.507 Atomic orbital electron populations 1.69985 1.04911 1.25623 1.54306 1.24867 0.95180 0.97822 1.00531 0.86580 0.79244 0.83933 0.78349 1.21010 1.21711 1.20953 1.19018 0.92103 0.84541 1.42427 0.91908 1.43759 1.32692 1.01664 1.52618 1.21019 0.87994 0.95648 0.89774 1.22070 0.96171 1.00444 0.99561 1.20952 0.97043 0.99817 0.96662 1.20279 0.98960 0.97936 0.96713 1.21366 0.99506 0.99831 0.97015 1.20527 0.94086 0.89504 0.89497 0.93532 1.21621 0.92722 0.95397 0.89988 1.45612 1.18369 1.56619 1.11643 1.17658 0.86456 0.79809 0.82389 1.90783 1.20898 1.55900 1.74603 1.20542 0.94642 0.97479 0.93900 1.21446 0.91734 0.97706 1.01303 1.21602 1.02617 0.98124 0.80134 1.48992 1.11055 1.34754 1.12400 1.82765 1.16680 1.19358 0.91117 1.77830 0.95799 1.09277 1.17785 1.75211 1.15039 1.18097 1.09824 1.22745 0.86994 0.99373 0.92498 1.20744 0.99273 0.95004 0.91068 0.93585 0.95759 0.90664 0.93784 0.93246 0.94176 0.90777 0.93473 0.94035 0.91734 0.93212 0.90795 0.92505 0.75007 0.80260 0.79554 0.80416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -20.78 11.03 55.49 0.61 -20.17 16 2 C 0.01 0.34 4.89 -17.44 -0.09 0.25 16 3 Si 0.89 19.65 29.58 -169.99 -5.03 14.63 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.25 -5.43 7.65 -15.06 -0.12 -5.55 16 8 H 0.06 1.44 6.72 -52.49 -0.35 1.09 16 9 N -0.59 -10.92 1.78 -164.46 -0.29 -11.22 16 10 C 0.18 3.40 4.66 -2.94 -0.01 3.38 16 11 C -0.14 -2.24 5.71 -27.31 -0.16 -2.40 16 12 C -0.11 -1.62 5.51 -28.01 -0.15 -1.77 16 13 C -0.10 -1.40 5.15 -29.81 -0.15 -1.55 16 14 C -0.14 -1.98 5.06 -28.60 -0.14 -2.13 16 15 C 0.17 2.73 2.19 -67.97 -0.15 2.58 16 16 H 0.05 0.71 8.06 -51.93 -0.42 0.29 16 17 C 0.13 2.01 4.52 -4.04 -0.02 2.00 16 18 N -0.67 -10.50 4.67 -61.26 -0.29 -10.79 16 19 C 0.55 8.79 7.78 -12.34 -0.10 8.70 16 20 O -0.54 -10.06 16.37 5.31 0.09 -9.98 16 21 C -0.05 -0.73 5.90 -104.62 -0.62 -1.35 16 22 C -0.10 -1.13 9.48 -39.52 -0.37 -1.51 16 23 C 0.10 1.13 11.19 -16.89 -0.19 0.94 16 24 N -0.29 -4.09 3.94 -12.43 -0.05 -4.14 16 25 N -0.12 -1.81 13.98 60.35 0.84 -0.97 16 26 N -0.01 -0.23 13.35 60.35 0.81 0.57 16 27 N -0.32 -5.26 12.27 31.04 0.38 -4.88 16 28 C 0.24 3.51 8.02 -156.35 -1.25 2.26 16 29 C -0.04 -0.50 9.70 -38.64 -0.37 -0.87 16 30 H 0.25 5.95 8.31 -40.82 -0.34 5.61 16 31 H 0.02 0.49 8.02 -51.93 -0.42 0.07 16 32 H 0.07 1.66 6.39 -51.93 -0.33 1.33 16 33 H 0.04 0.65 7.32 -51.93 -0.38 0.27 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 1.31 7.48 -51.93 -0.39 0.93 16 37 H 0.05 0.62 7.36 -51.93 -0.38 0.24 16 38 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.05 0.64 8.11 -51.93 -0.42 0.22 16 41 H 0.07 1.34 6.83 -51.93 -0.35 0.98 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.41 6.35 6.15 -40.82 -0.25 6.10 16 44 H 0.18 1.93 6.46 -52.49 -0.34 1.59 16 45 H 0.19 1.46 8.06 -52.49 -0.42 1.04 16 46 H 0.18 2.25 7.67 -52.49 -0.40 1.85 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -26.14 369.35 -7.37 -33.51 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.11 Total: 4.88 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -3.90 Total: 2.98 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 2.02 Total: -51.59 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -26.14 -7.37 -33.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968974278.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.225 kcal (2) G-P(sol) polarization free energy of solvation -26.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds