Wall clock time and date at job start Wed Apr 1 2020 04:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86804 * 119.99908 * 2 1 4 4 H 1.48497 * 109.47116 * 239.99739 * 3 2 1 5 5 H 1.48495 * 109.47359 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47044 * 120.00128 * 3 2 1 7 7 C 1.38806 * 120.00287 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00617 * 194.57795 * 7 2 1 9 9 N 1.36937 * 119.99988 * 14.58186 * 7 2 1 10 10 C 1.47614 * 118.64287 * 27.77195 * 9 7 2 11 11 C 1.53936 * 112.14614 * 137.86449 * 10 9 7 12 12 C 1.50884 * 110.09706 * 319.44144 * 11 10 9 13 13 C 1.52567 * 109.34822 * 91.88527 * 12 11 10 14 14 C 1.47050 * 114.29719 * 274.94095 * 13 12 11 15 15 C 1.44584 * 118.64475 * 207.75635 * 9 7 2 16 16 H 1.08997 * 109.44889 * 150.69944 * 15 9 7 17 17 C 1.52998 * 109.44682 * 30.75276 * 15 9 7 18 18 N 1.46500 * 109.47265 * 54.94945 * 17 15 9 19 19 C 1.34777 * 119.99999 * 180.27247 * 18 17 15 20 20 O 1.21565 * 119.99514 * 359.72788 * 19 18 17 21 21 C 1.47818 * 120.00069 * 179.72291 * 19 18 17 22 22 C 1.41582 * 120.37356 * 0.02562 * 21 19 18 23 23 C 1.34821 * 120.11133 * 179.97438 * 22 21 19 24 24 N 1.36053 * 120.83080 * 359.97438 * 23 22 21 25 25 N 1.40251 * 133.73203 * 179.97438 * 24 23 22 26 26 N 1.28970 * 107.02169 * 180.02562 * 25 24 23 27 27 N 1.28544 * 110.84655 * 0.02562 * 26 25 24 28 28 C 1.32621 * 110.17973 * 359.97438 * 27 26 25 29 29 C 1.38458 * 120.37158 * 179.72278 * 21 19 18 30 30 H 0.97008 * 119.99997 * 359.97438 * 1 2 3 31 31 H 1.08996 * 108.94475 * 258.55779 * 10 9 7 32 32 H 1.09004 * 108.94227 * 17.17772 * 10 9 7 33 33 H 1.09001 * 109.36589 * 79.63232 * 11 10 9 34 34 H 1.08995 * 109.37028 * 199.37554 * 11 10 9 35 35 H 1.09000 * 109.49229 * 211.84808 * 12 11 10 36 36 H 1.09001 * 109.48963 * 331.92668 * 12 11 10 37 37 H 1.08997 * 108.51350 * 36.23109 * 13 12 11 38 38 H 1.08999 * 108.51471 * 153.87639 * 13 12 11 39 39 H 1.08998 * 109.36903 * 302.59969 * 14 13 12 40 40 H 1.08997 * 109.29316 * 183.11503 * 14 13 12 41 41 H 1.09000 * 109.46871 * 294.94631 * 17 15 9 42 42 H 1.08999 * 109.46791 * 174.94971 * 17 15 9 43 43 H 0.96998 * 120.00089 * 0.02562 * 18 17 15 44 44 H 1.07997 * 119.94134 * 359.97438 * 22 21 19 45 45 H 1.07999 * 119.58011 * 179.97438 * 23 22 21 46 46 H 1.07993 * 120.52341 * 0.02562 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0641 -1.2171 0.2359 9 7 1.3587 -2.3690 -0.2975 10 6 0.1769 -2.3140 -1.1803 11 6 0.1657 -3.4608 -2.2071 12 6 1.5572 -3.6899 -2.7437 13 6 2.2578 -4.7479 -1.8967 14 6 2.9097 -4.2214 -0.6883 15 6 1.8568 -3.6042 0.2652 16 1 1.0306 -4.3032 0.3949 17 6 2.5028 -3.3214 1.6230 18 7 1.5420 -2.6303 2.4864 19 6 1.8952 -2.2734 3.7371 20 8 3.0095 -2.5293 4.1504 21 6 0.9279 -1.5707 4.6063 22 6 -0.3720 -1.2691 4.1331 23 6 -1.2503 -0.6285 4.9305 24 7 -0.9062 -0.2633 6.1951 25 7 -1.5827 0.3958 7.2319 26 7 -0.7638 0.4774 8.2250 27 7 0.3662 -0.0604 7.9315 28 6 0.3393 -0.5348 6.6933 29 6 1.2807 -1.2055 5.8944 30 1 -0.4850 0.8401 0.0004 31 1 -0.7240 -2.3766 -0.5699 32 1 0.1765 -1.3626 -1.7122 33 1 -0.1912 -4.3722 -1.7273 34 1 -0.4993 -3.2019 -3.0310 35 1 1.4969 -4.0323 -3.7767 36 1 2.1212 -2.7581 -2.7013 37 1 1.5220 -5.4940 -1.5968 38 1 3.0145 -5.2370 -2.5101 39 1 3.6323 -3.4561 -0.9716 40 1 3.4284 -5.0321 -0.1767 41 1 3.3827 -2.6934 1.4829 42 1 2.7980 -4.2621 2.0878 43 1 0.6528 -2.4265 2.1568 44 1 -0.6605 -1.5528 3.1318 45 1 -2.2395 -0.4023 4.5607 46 1 2.2652 -1.4293 6.2777 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968974278.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:39 Heat of formation + Delta-G solvation = 120.095673 kcal Electronic energy + Delta-G solvation = -30934.795047 eV Core-core repulsion = 26862.645803 eV Total energy + Delta-G solvation = -4072.149244 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.57571 -41.20474 -39.81707 -39.10594 -36.08216 -35.21304 -35.16207 -33.72415 -32.84166 -32.38833 -31.65195 -28.83938 -27.50266 -26.08772 -25.90561 -25.12829 -23.98792 -23.55557 -21.99636 -21.14703 -20.73776 -19.82886 -19.18485 -18.35484 -18.07785 -17.60469 -17.18343 -16.79033 -16.31236 -16.17871 -15.95134 -15.79600 -15.58696 -15.14445 -14.90897 -14.50861 -14.45903 -14.35272 -14.12766 -13.74495 -13.63387 -13.35973 -13.14336 -13.06831 -12.87722 -12.78265 -12.73536 -12.64299 -12.36582 -12.31448 -11.97342 -11.48158 -11.35254 -11.32051 -11.29685 -11.22186 -11.14540 -10.85672 -10.29272 -9.92864 -9.74587 -8.49582 -7.75315 -5.16629 -1.08108 -0.74754 0.54274 0.88605 1.39130 1.43499 1.48934 1.53273 1.93800 2.32237 2.55381 2.61925 2.90170 3.30662 3.39955 3.47052 3.66489 3.72458 3.94275 4.05300 4.10720 4.15477 4.32487 4.35270 4.47708 4.51138 4.57204 4.68019 4.71525 4.75307 4.80061 4.90101 5.07661 5.14598 5.20187 5.20803 5.29861 5.33665 5.44994 5.48596 5.58537 5.62621 5.75543 5.81742 5.86897 5.99433 6.52936 6.61087 7.07605 7.19078 7.32993 8.06526 8.44376 9.27130 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.003527 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.062943 B = 7937.546916 C = 8655.404709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.013 4.013 3 Si 0.915 3.085 4 H -0.293 1.293 5 H -0.299 1.299 6 H -0.295 1.295 7 C -0.231 4.231 8 H 0.048 0.952 9 N -0.588 5.588 10 C 0.189 3.811 11 C -0.134 4.134 12 C -0.105 4.105 13 C -0.100 4.100 14 C -0.130 4.130 15 C 0.173 3.827 16 H 0.065 0.935 17 C 0.129 3.871 18 N -0.670 5.670 19 C 0.553 3.447 20 O -0.572 6.572 21 C -0.053 4.053 22 C -0.090 4.090 23 C 0.113 3.887 24 N -0.291 5.291 25 N -0.123 5.123 26 N -0.029 5.029 27 N -0.340 5.340 28 C 0.229 3.771 29 C -0.036 4.036 30 H 0.247 0.753 31 H 0.014 0.986 32 H 0.038 0.962 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.041 0.959 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.040 0.960 40 H 0.073 0.927 41 H 0.047 0.953 42 H 0.076 0.924 43 H 0.414 0.586 44 H 0.193 0.807 45 H 0.225 0.775 46 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.269 -9.645 -0.026 10.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.210 4.210 3 Si 0.748 3.252 4 H -0.220 1.220 5 H -0.225 1.225 6 H -0.222 1.222 7 C -0.362 4.362 8 H 0.065 0.935 9 N -0.310 5.310 10 C 0.064 3.936 11 C -0.173 4.173 12 C -0.142 4.142 13 C -0.138 4.138 14 C -0.171 4.171 15 C 0.066 3.934 16 H 0.083 0.917 17 C 0.005 3.995 18 N -0.319 5.319 19 C 0.338 3.662 20 O -0.453 6.453 21 C -0.065 4.065 22 C -0.114 4.114 23 C -0.013 4.013 24 N -0.071 5.071 25 N -0.106 5.106 26 N -0.022 5.022 27 N -0.202 5.202 28 C -0.023 4.023 29 C -0.060 4.060 30 H 0.057 0.943 31 H 0.032 0.968 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.094 0.906 43 H 0.253 0.747 44 H 0.210 0.790 45 H 0.241 0.759 46 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -3.274 -8.958 1.552 9.663 hybrid contribution 0.507 1.447 -1.078 1.875 sum -2.767 -7.511 0.474 8.019 Atomic orbital electron populations 1.70020 1.04751 1.24927 1.55734 1.25026 0.95502 0.98373 1.02131 0.86194 0.78288 0.83522 0.77236 1.22001 1.22507 1.22205 1.18911 0.91411 0.85588 1.40295 0.93465 1.43786 1.32404 1.01836 1.53003 1.20812 0.87454 0.95383 0.89960 1.21955 0.96846 0.99623 0.98864 1.20915 0.96307 0.98869 0.98158 1.20263 0.99652 0.97674 0.96202 1.21299 0.98664 0.99820 0.97323 1.20685 0.94917 0.88377 0.89451 0.91699 1.21600 0.91853 0.95689 0.90367 1.45615 1.18350 1.56404 1.11532 1.17908 0.86376 0.79398 0.82506 1.90769 1.22263 1.57113 1.75176 1.20400 0.95093 0.97491 0.93490 1.21538 0.90755 0.97335 1.01737 1.22229 1.03920 0.96491 0.78686 1.49116 1.10648 1.34358 1.12979 1.82685 1.16761 1.19799 0.91366 1.77801 0.96057 1.09894 1.18421 1.75132 1.15326 1.18840 1.10895 1.22767 0.87550 0.99673 0.92319 1.20737 0.99311 0.94937 0.91006 0.94310 0.96814 0.94356 0.91936 0.92475 0.92407 0.94040 0.91803 0.92490 0.94098 0.90821 0.93420 0.90591 0.74734 0.79012 0.75878 0.80064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -41.50 11.03 21.65 0.24 -41.26 16 2 C -0.01 -0.60 4.89 84.86 0.41 -0.19 16 3 Si 0.92 40.69 29.58 68.60 2.03 42.72 16 4 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 5 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 7 C -0.23 -9.97 7.65 84.03 0.64 -9.32 16 8 H 0.05 2.20 6.72 -2.91 -0.02 2.18 16 9 N -0.59 -21.28 1.78 -674.23 -1.20 -22.48 16 10 C 0.19 6.88 4.66 86.48 0.40 7.28 16 11 C -0.13 -3.83 5.71 30.22 0.17 -3.66 16 12 C -0.10 -2.91 5.51 29.76 0.16 -2.74 16 13 C -0.10 -2.41 5.15 28.60 0.15 -2.26 16 14 C -0.13 -3.46 5.06 29.38 0.15 -3.31 16 15 C 0.17 5.08 2.19 45.99 0.10 5.18 16 16 H 0.07 1.73 8.06 -2.39 -0.02 1.71 16 17 C 0.13 3.91 4.52 86.38 0.39 4.30 16 18 N -0.67 -19.99 4.67 -465.99 -2.18 -22.17 16 19 C 0.55 17.09 7.78 86.78 0.67 17.76 16 20 O -0.57 -21.00 16.37 -3.92 -0.06 -21.06 16 21 C -0.05 -1.37 5.90 -19.87 -0.12 -1.49 16 22 C -0.09 -1.88 9.48 22.31 0.21 -1.67 16 23 C 0.11 2.21 11.19 83.25 0.93 3.14 16 24 N -0.29 -7.74 3.94 -193.23 -0.76 -8.50 16 25 N -0.12 -3.71 13.98 37.02 0.52 -3.20 16 26 N -0.03 -0.95 13.35 37.02 0.49 -0.46 16 27 N -0.34 -11.13 12.27 -55.72 -0.68 -11.81 16 28 C 0.23 6.65 8.02 134.05 1.07 7.72 16 29 C -0.04 -0.94 9.70 22.88 0.22 -0.72 16 30 H 0.25 11.52 8.31 -92.70 -0.77 10.75 16 31 H 0.01 0.53 8.02 -2.39 -0.02 0.51 16 32 H 0.04 1.68 6.39 -2.38 -0.02 1.67 16 33 H 0.06 1.58 7.32 -2.39 -0.02 1.56 16 34 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.04 1.42 7.48 -2.39 -0.02 1.41 16 37 H 0.06 1.36 7.36 -2.39 -0.02 1.35 16 38 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.07 1.63 8.11 -2.39 -0.02 1.61 16 41 H 0.05 1.71 6.83 -2.39 -0.02 1.69 16 42 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.41 12.01 6.15 -92.71 -0.57 11.44 16 44 H 0.19 3.62 6.46 -2.91 -0.02 3.60 16 45 H 0.22 2.66 8.06 -2.91 -0.02 2.63 16 46 H 0.18 4.60 7.67 -2.91 -0.02 4.57 16 Total: -1.00 -56.88 369.35 4.43 -52.45 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.46 Total: 15.75 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: 5.58 Total: 20.02 kcal Atomic # 7 Polarization: -106.31 SS G_CDS: -3.57 Total: -109.88 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.06 Total: -21.06 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -56.88 4.43 -52.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968974278.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.545 kcal (2) G-P(sol) polarization free energy of solvation -56.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds