Wall clock time and date at job start Wed Apr 1 2020 04:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27760 * 3 2 1 5 5 H 1.48505 * 109.47234 * 0.27769 * 3 2 1 6 6 H 1.48492 * 109.47124 * 120.27784 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.46506 * 119.99589 * 180.02562 * 9 7 2 11 11 H 1.09004 * 110.63821 * 36.69387 * 10 9 7 12 12 C 1.54322 * 110.72239 * 273.54749 * 10 9 7 13 13 N 1.47019 * 107.27167 * 219.44589 * 12 10 9 14 14 C 1.34778 * 125.65031 * 178.90510 * 13 12 10 15 15 O 1.21274 * 120.00331 * 180.02562 * 14 13 12 16 16 C 1.50702 * 119.99519 * 0.02562 * 14 13 12 17 17 C 1.53003 * 109.46678 * 179.97438 * 16 14 13 18 18 N 1.46507 * 109.46861 * 180.02562 * 17 16 14 19 19 C 1.36342 * 125.63355 * 269.69380 * 18 17 16 20 20 C 1.34848 * 108.21952 * 179.83098 * 19 18 17 21 21 C 1.40898 * 107.41369 * 0.42512 * 20 19 18 22 22 C 1.34841 * 107.41560 * 359.73490 * 21 20 19 23 23 C 1.47422 * 108.70354 * 358.94003 * 13 12 10 24 24 C 1.54911 * 104.83472 * 24.13107 * 23 13 12 25 25 H 1.08997 * 111.00785 * 204.92004 * 24 23 13 26 26 N 1.46502 * 111.00700 * 81.06043 * 24 23 13 27 27 C 1.35308 * 125.86620 * 332.52727 * 26 24 23 28 28 C 1.35347 * 106.17327 * 179.90141 * 27 26 24 29 29 N 1.33772 * 106.49775 * 0.35036 * 28 27 26 30 30 N 1.28630 * 108.88222 * 359.77457 * 29 28 27 31 31 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 32 32 H 0.96999 * 120.00331 * 0.02562 * 9 7 2 33 33 H 1.09004 * 109.88015 * 338.86580 * 12 10 9 34 34 H 1.09003 * 109.88244 * 99.86998 * 12 10 9 35 35 H 1.08992 * 109.47686 * 299.99915 * 16 14 13 36 36 H 1.08999 * 109.47095 * 60.00516 * 16 14 13 37 37 H 1.09001 * 109.47624 * 299.99783 * 17 16 14 38 38 H 1.08999 * 109.46741 * 60.00538 * 17 16 14 39 39 H 1.08001 * 125.89126 * 359.96337 * 19 18 17 40 40 H 1.07999 * 126.29228 * 180.16254 * 20 19 18 41 41 H 1.08003 * 126.28563 * 179.73399 * 21 20 19 42 42 H 1.08003 * 125.89288 * 180.02562 * 22 21 20 43 43 H 1.09002 * 110.36775 * 142.96424 * 23 13 12 44 44 H 1.08998 * 110.37201 * 265.28997 * 23 13 12 45 45 H 1.08003 * 126.91383 * 0.02562 * 27 26 24 46 46 H 1.08007 * 126.74970 * 180.11915 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.0989 1.6993 -1.2159 5 1 1.2853 2.7465 0.0068 6 1 3.1090 1.6934 1.2090 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 1 2.9608 -3.5819 0.5947 12 6 2.4027 -4.0819 -1.4544 13 7 2.2170 -5.5380 -1.5368 14 6 2.3970 -6.2917 -2.6394 15 8 2.2136 -7.4896 -2.5918 16 6 2.8261 -5.6459 -3.9317 17 6 2.9573 -6.7159 -5.0175 18 7 3.3751 -6.0882 -6.2736 19 6 2.5395 -5.6017 -7.2349 20 6 3.2932 -5.1003 -8.2343 21 6 4.6436 -5.2930 -7.8814 22 6 4.6635 -5.8993 -6.6772 23 6 1.8004 -6.0369 -0.2136 24 6 1.1530 -4.8153 0.4852 25 1 1.2038 -4.9132 1.5696 26 7 -0.2305 -4.6283 0.0410 27 6 -0.7357 -5.0019 -1.1573 28 6 -2.0409 -4.6438 -1.1443 29 7 -2.2654 -4.0692 0.0426 30 7 -1.1728 -4.0757 0.7215 31 1 -0.4850 0.8400 0.0040 32 1 0.3555 -2.3880 -0.0021 33 1 1.7357 -3.5827 -2.1573 34 1 3.4378 -3.8245 -1.6794 35 1 2.0818 -4.9096 -4.2347 36 1 3.7879 -5.1532 -3.7897 37 1 3.7019 -7.4520 -4.7144 38 1 1.9956 -7.2090 -5.1596 39 1 1.4601 -5.6137 -7.2007 40 1 2.9287 -4.6400 -9.1407 41 1 5.5045 -5.0074 -8.4678 42 1 5.5477 -6.1857 -6.1270 43 1 1.0724 -6.8408 -0.3232 44 1 2.6661 -6.3824 0.3515 45 1 -0.2048 -5.4896 -1.9615 46 1 -2.7589 -4.7896 -1.9379 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070302233.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:07 Heat of formation + Delta-G solvation = 153.446262 kcal Electronic energy + Delta-G solvation = -30450.030527 eV Core-core repulsion = 26379.327473 eV Total energy + Delta-G solvation = -4070.703054 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.93262 -41.27627 -40.20682 -38.05316 -34.42181 -34.26347 -33.59228 -31.42932 -30.69351 -30.35209 -29.05982 -28.88375 -27.82784 -25.17110 -23.98781 -23.34243 -22.25220 -21.70758 -20.58049 -20.25630 -20.06867 -19.41950 -18.01092 -17.69537 -17.47885 -16.70576 -16.22160 -15.71056 -15.64362 -14.91688 -14.74101 -14.69266 -14.39682 -13.98059 -13.88040 -13.61890 -13.44475 -13.31344 -13.11095 -12.86457 -12.67301 -12.39160 -12.35491 -12.29967 -12.15073 -11.75679 -11.56231 -11.34494 -11.23574 -11.04550 -10.95616 -10.51543 -10.30850 -10.20874 -9.99534 -9.66818 -9.19333 -8.95881 -8.82868 -8.75037 -8.27297 -7.32286 -5.96161 -3.33366 1.99971 2.11915 2.35492 2.54036 2.61372 2.96608 2.98312 3.03693 3.31372 3.36019 3.38677 4.00785 4.34691 4.39187 4.43283 4.48228 4.62894 4.80760 4.83925 4.93746 5.05276 5.10510 5.12457 5.15263 5.21317 5.34645 5.38734 5.41270 5.47540 5.51918 5.55382 5.57022 5.60012 5.79381 5.92108 6.03095 6.11612 6.18216 6.20892 6.26961 6.51261 6.88283 6.95911 7.11895 7.24394 7.25996 7.46781 7.86398 8.16212 8.96296 9.29396 9.76295 10.10539 11.23226 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.008611 B = 0.003581 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3250.865226 B = 7816.341329 C = 9616.039671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.003 3.997 3 Si 0.911 3.089 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.271 4.271 8 H 0.075 0.925 9 N -0.707 5.707 10 C 0.167 3.833 11 H 0.091 0.909 12 C 0.064 3.936 13 N -0.615 5.615 14 C 0.535 3.465 15 O -0.548 6.548 16 C -0.154 4.154 17 C 0.123 3.877 18 N -0.448 5.448 19 C -0.014 4.014 20 C -0.203 4.203 21 C -0.203 4.203 22 C -0.017 4.017 23 C 0.104 3.896 24 C 0.112 3.888 25 H 0.134 0.866 26 N -0.269 5.269 27 C -0.046 4.046 28 C -0.057 4.057 29 N -0.270 5.270 30 N -0.064 5.064 31 H 0.261 0.739 32 H 0.394 0.606 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.160 0.840 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.159 0.841 43 H 0.090 0.910 44 H 0.099 0.901 45 H 0.174 0.826 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.062 -14.616 -8.973 18.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.196 4.196 3 Si 0.740 3.260 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.209 1.209 7 C -0.401 4.401 8 H 0.092 0.908 9 N -0.349 5.349 10 C 0.052 3.948 11 H 0.109 0.891 12 C -0.062 4.062 13 N -0.349 5.349 14 C 0.323 3.677 15 O -0.426 6.426 16 C -0.194 4.194 17 C 0.001 3.999 18 N -0.124 5.124 19 C -0.144 4.144 20 C -0.228 4.228 21 C -0.228 4.228 22 C -0.146 4.146 23 C -0.020 4.020 24 C 0.008 3.992 25 H 0.152 0.848 26 N -0.063 5.063 27 C -0.197 4.197 28 C -0.214 4.214 29 N -0.136 5.136 30 N -0.043 5.043 31 H 0.071 0.929 32 H 0.231 0.769 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.177 0.823 40 H 0.151 0.849 41 H 0.151 0.849 42 H 0.176 0.824 43 H 0.108 0.892 44 H 0.117 0.883 45 H 0.191 0.809 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 6.553 -14.561 -7.333 17.571 hybrid contribution 0.652 0.666 -1.184 1.507 sum 7.205 -13.896 -8.517 17.820 Atomic orbital electron populations 1.69692 1.05192 1.26484 1.54482 1.24855 0.95485 0.98030 1.01207 0.86248 0.78610 0.83136 0.77973 1.21007 1.21449 1.20907 1.19106 0.91000 0.83509 1.46474 0.90751 1.42434 1.06418 0.98832 1.87172 1.21563 0.94460 0.86240 0.92511 0.89128 1.23590 1.02110 0.77454 1.03049 1.48619 1.67301 1.09757 1.09245 1.20035 0.77179 0.86369 0.84095 1.90725 1.52323 1.14430 1.85131 1.21993 1.05053 0.99954 0.92430 1.21534 1.03378 0.94142 0.80855 1.44178 1.06192 1.46458 1.15600 1.21878 0.96342 1.05320 0.90847 1.20910 0.93390 1.07974 1.00513 1.20901 0.97174 1.07252 0.97451 1.21837 0.86699 1.07677 0.98399 1.22488 1.00186 0.95336 0.83947 1.23299 0.76534 0.97839 1.01514 0.84797 1.47152 1.10217 1.37647 1.11262 1.23374 0.96007 1.08286 0.92049 1.23468 0.95460 1.04157 0.98300 1.75110 1.17172 1.16734 1.04558 1.78400 0.91434 1.14071 1.20428 0.92900 0.76882 0.90299 0.90925 0.87850 0.87969 0.88528 0.88447 0.82265 0.84874 0.84915 0.82375 0.89218 0.88341 0.80860 0.80030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.88 13.06 55.49 0.72 -26.16 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 3 Si 0.91 21.21 29.55 -169.99 -5.02 16.18 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.27 -6.85 9.98 -15.06 -0.15 -7.00 16 8 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 9 N -0.71 -15.98 5.13 -51.64 -0.26 -16.24 16 10 C 0.17 2.67 3.46 -66.09 -0.23 2.44 16 11 H 0.09 1.34 8.12 -51.93 -0.42 0.92 16 12 C 0.06 0.87 5.86 -3.07 -0.02 0.85 16 13 N -0.61 -7.09 2.17 -170.52 -0.37 -7.46 16 14 C 0.53 6.12 7.61 -10.98 -0.08 6.03 16 15 O -0.55 -7.56 16.24 5.56 0.09 -7.47 16 16 C -0.15 -1.45 5.22 -27.88 -0.15 -1.59 16 17 C 0.12 1.10 5.38 -4.04 -0.02 1.08 16 18 N -0.45 -4.50 2.75 -117.12 -0.32 -4.82 16 19 C -0.01 -0.15 11.43 -16.75 -0.19 -0.34 16 20 C -0.20 -2.19 10.86 -39.78 -0.43 -2.62 16 21 C -0.20 -2.15 10.86 -39.78 -0.43 -2.59 16 22 C -0.02 -0.17 11.43 -16.75 -0.19 -0.36 16 23 C 0.10 1.13 5.89 -2.53 -0.01 1.12 16 24 C 0.11 1.54 4.06 -65.78 -0.27 1.27 16 25 H 0.13 1.64 8.14 -51.93 -0.42 1.22 16 26 N -0.27 -4.48 2.46 -52.68 -0.13 -4.61 16 27 C -0.05 -0.71 10.01 -17.05 -0.17 -0.88 16 28 C -0.06 -0.93 12.05 -17.74 -0.21 -1.14 16 29 N -0.27 -5.44 12.41 30.24 0.38 -5.07 16 30 N -0.06 -1.29 12.18 60.35 0.74 -0.56 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.39 9.95 5.90 -40.82 -0.24 9.71 16 33 H 0.08 1.26 8.03 -51.93 -0.42 0.84 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.10 0.83 8.10 -51.93 -0.42 0.41 16 38 H 0.10 0.86 8.10 -51.93 -0.42 0.43 16 39 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 42 H 0.16 1.22 8.06 -52.48 -0.42 0.79 16 43 H 0.09 1.01 7.77 -51.93 -0.40 0.61 16 44 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.17 2.29 6.78 -52.48 -0.36 1.94 16 46 H 0.18 2.30 8.06 -52.48 -0.42 1.87 16 LS Contribution 386.79 15.07 5.83 5.83 Total: -1.00 -33.53 386.79 -7.47 -40.99 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -6.45 Total: 13.12 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -2.66 Total: -3.74 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: 0.75 Total: -64.92 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: 0.09 Total: -7.47 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.53 -7.47 -40.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070302233.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.439 kcal (2) G-P(sol) polarization free energy of solvation -33.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds