Wall clock time and date at job start Wed Apr 1 2020 04:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27760 * 3 2 1 5 5 H 1.48505 * 109.47234 * 0.27769 * 3 2 1 6 6 H 1.48492 * 109.47124 * 120.27784 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.46506 * 119.99589 * 180.02562 * 9 7 2 11 11 H 1.09004 * 110.63821 * 36.69387 * 10 9 7 12 12 C 1.54322 * 110.72239 * 273.54749 * 10 9 7 13 13 N 1.47019 * 107.27167 * 219.44589 * 12 10 9 14 14 C 1.34778 * 125.65031 * 178.90510 * 13 12 10 15 15 O 1.21274 * 120.00331 * 180.02562 * 14 13 12 16 16 C 1.50702 * 119.99519 * 0.02562 * 14 13 12 17 17 C 1.53003 * 109.46678 * 179.97438 * 16 14 13 18 18 N 1.46507 * 109.46861 * 180.02562 * 17 16 14 19 19 C 1.36342 * 125.63355 * 269.69380 * 18 17 16 20 20 C 1.34848 * 108.21952 * 179.83098 * 19 18 17 21 21 C 1.40898 * 107.41369 * 0.42512 * 20 19 18 22 22 C 1.34841 * 107.41560 * 359.73490 * 21 20 19 23 23 C 1.47422 * 108.70354 * 358.94003 * 13 12 10 24 24 C 1.54911 * 104.83472 * 24.13107 * 23 13 12 25 25 H 1.08997 * 111.00785 * 204.92004 * 24 23 13 26 26 N 1.46502 * 111.00700 * 81.06043 * 24 23 13 27 27 C 1.35308 * 125.86620 * 332.52727 * 26 24 23 28 28 C 1.35347 * 106.17327 * 179.90141 * 27 26 24 29 29 N 1.33772 * 106.49775 * 0.35036 * 28 27 26 30 30 N 1.28630 * 108.88222 * 359.77457 * 29 28 27 31 31 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 32 32 H 0.96999 * 120.00331 * 0.02562 * 9 7 2 33 33 H 1.09004 * 109.88015 * 338.86580 * 12 10 9 34 34 H 1.09003 * 109.88244 * 99.86998 * 12 10 9 35 35 H 1.08992 * 109.47686 * 299.99915 * 16 14 13 36 36 H 1.08999 * 109.47095 * 60.00516 * 16 14 13 37 37 H 1.09001 * 109.47624 * 299.99783 * 17 16 14 38 38 H 1.08999 * 109.46741 * 60.00538 * 17 16 14 39 39 H 1.08001 * 125.89126 * 359.96337 * 19 18 17 40 40 H 1.07999 * 126.29228 * 180.16254 * 20 19 18 41 41 H 1.08003 * 126.28563 * 179.73399 * 21 20 19 42 42 H 1.08003 * 125.89288 * 180.02562 * 22 21 20 43 43 H 1.09002 * 110.36775 * 142.96424 * 23 13 12 44 44 H 1.08998 * 110.37201 * 265.28997 * 23 13 12 45 45 H 1.08003 * 126.91383 * 0.02562 * 27 26 24 46 46 H 1.08007 * 126.74970 * 180.11915 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.0989 1.6993 -1.2159 5 1 1.2853 2.7465 0.0068 6 1 3.1090 1.6934 1.2090 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 1 2.9608 -3.5819 0.5947 12 6 2.4027 -4.0819 -1.4544 13 7 2.2170 -5.5380 -1.5368 14 6 2.3970 -6.2917 -2.6394 15 8 2.2136 -7.4896 -2.5918 16 6 2.8261 -5.6459 -3.9317 17 6 2.9573 -6.7159 -5.0175 18 7 3.3751 -6.0882 -6.2736 19 6 2.5395 -5.6017 -7.2349 20 6 3.2932 -5.1003 -8.2343 21 6 4.6436 -5.2930 -7.8814 22 6 4.6635 -5.8993 -6.6772 23 6 1.8004 -6.0369 -0.2136 24 6 1.1530 -4.8153 0.4852 25 1 1.2038 -4.9132 1.5696 26 7 -0.2305 -4.6283 0.0410 27 6 -0.7357 -5.0019 -1.1573 28 6 -2.0409 -4.6438 -1.1443 29 7 -2.2654 -4.0692 0.0426 30 7 -1.1728 -4.0757 0.7215 31 1 -0.4850 0.8400 0.0040 32 1 0.3555 -2.3880 -0.0021 33 1 1.7357 -3.5827 -2.1573 34 1 3.4378 -3.8245 -1.6794 35 1 2.0818 -4.9096 -4.2347 36 1 3.7879 -5.1532 -3.7897 37 1 3.7019 -7.4520 -4.7144 38 1 1.9956 -7.2090 -5.1596 39 1 1.4601 -5.6137 -7.2007 40 1 2.9287 -4.6400 -9.1407 41 1 5.5045 -5.0074 -8.4678 42 1 5.5477 -6.1857 -6.1270 43 1 1.0724 -6.8408 -0.3232 44 1 2.6661 -6.3824 0.3515 45 1 -0.2048 -5.4896 -1.9615 46 1 -2.7589 -4.7896 -1.9379 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070302233.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:06 Heat of formation + Delta-G solvation = 132.889674 kcal Electronic energy + Delta-G solvation = -30450.921927 eV Core-core repulsion = 26379.327473 eV Total energy + Delta-G solvation = -4071.594454 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.24606 -42.02905 -41.21166 -39.17276 -36.00542 -35.09204 -34.82520 -33.11486 -31.94952 -31.43795 -30.09007 -29.62169 -29.15191 -26.27711 -25.56758 -24.35634 -23.59930 -22.97417 -21.51645 -21.33189 -20.82735 -20.38351 -19.42061 -18.86368 -18.65816 -17.68413 -17.17320 -17.06560 -16.73184 -16.40889 -15.97106 -15.75030 -15.33311 -15.28714 -15.19185 -14.70495 -14.67388 -14.26848 -14.17268 -13.83798 -13.63928 -13.61470 -13.20694 -13.13238 -12.96141 -12.93389 -12.86781 -12.73710 -12.61011 -12.46396 -12.25493 -12.15112 -11.92249 -11.79766 -11.27784 -11.03807 -10.92695 -10.28257 -9.83151 -9.51746 -9.17605 -9.03134 -7.97230 -5.31873 0.70291 1.34686 1.41712 1.45276 1.47849 1.49558 1.55912 1.68406 1.69771 2.16845 2.18574 2.52081 2.97599 3.23229 3.46070 3.56642 3.64461 3.66934 3.74270 3.79278 4.02263 4.07704 4.19489 4.25100 4.26846 4.32687 4.35440 4.39910 4.43346 4.50434 4.57076 4.75490 4.79545 4.82096 4.83420 4.89265 4.98781 5.04774 5.27336 5.43290 5.46433 5.48762 5.71615 6.12386 6.18670 6.28563 6.36274 6.52491 6.94108 7.28155 7.60195 7.97058 8.17697 9.23830 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.008611 B = 0.003581 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3250.865226 B = 7816.341329 C = 9616.039671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.067 4.067 3 Si 0.971 3.029 4 H -0.274 1.274 5 H -0.305 1.305 6 H -0.275 1.275 7 C -0.251 4.251 8 H 0.092 0.908 9 N -0.729 5.729 10 C 0.157 3.843 11 H 0.111 0.889 12 C 0.084 3.916 13 N -0.611 5.611 14 C 0.542 3.458 15 O -0.566 6.566 16 C -0.146 4.146 17 C 0.128 3.872 18 N -0.451 5.451 19 C -0.026 4.026 20 C -0.224 4.224 21 C -0.224 4.224 22 C -0.022 4.022 23 C 0.114 3.886 24 C 0.108 3.892 25 H 0.147 0.853 26 N -0.264 5.264 27 C -0.036 4.036 28 C -0.065 4.065 29 N -0.310 5.310 30 N -0.107 5.107 31 H 0.249 0.751 32 H 0.379 0.621 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.175 0.825 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.181 0.819 43 H 0.091 0.909 44 H 0.133 0.867 45 H 0.197 0.803 46 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.446 -16.337 -9.579 21.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.261 4.261 3 Si 0.800 3.200 4 H -0.200 1.200 5 H -0.232 1.232 6 H -0.200 1.200 7 C -0.382 4.382 8 H 0.110 0.890 9 N -0.369 5.369 10 C 0.045 3.955 11 H 0.128 0.872 12 C -0.042 4.042 13 N -0.345 5.345 14 C 0.331 3.669 15 O -0.446 6.446 16 C -0.186 4.186 17 C 0.006 3.994 18 N -0.126 5.126 19 C -0.156 4.156 20 C -0.248 4.248 21 C -0.248 4.248 22 C -0.152 4.152 23 C -0.010 4.010 24 C 0.005 3.995 25 H 0.165 0.835 26 N -0.058 5.058 27 C -0.188 4.188 28 C -0.222 4.222 29 N -0.175 5.175 30 N -0.086 5.086 31 H 0.058 0.942 32 H 0.213 0.787 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.120 0.880 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.192 0.808 40 H 0.158 0.842 41 H 0.160 0.840 42 H 0.198 0.802 43 H 0.110 0.890 44 H 0.150 0.850 45 H 0.214 0.786 46 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 9.005 -16.337 -7.925 20.268 hybrid contribution -0.015 1.045 -1.041 1.475 sum 8.991 -15.292 -8.966 19.876 Atomic orbital electron populations 1.69881 1.06951 1.26121 1.58267 1.25621 0.96053 1.01370 1.03007 0.85258 0.77116 0.79182 0.78409 1.19986 1.23167 1.20037 1.19614 0.91833 0.84420 1.42351 0.89038 1.42607 1.06053 1.00444 1.87816 1.21901 0.94996 0.84443 0.94196 0.87182 1.23066 1.02461 0.78424 1.00244 1.48539 1.67433 1.08742 1.09805 1.20236 0.76438 0.85954 0.84250 1.90734 1.53201 1.15304 1.85346 1.21941 1.05337 0.99869 0.91462 1.21529 1.03702 0.93922 0.80256 1.44285 1.06223 1.46347 1.15784 1.22214 0.97244 1.05202 0.90904 1.21194 0.93885 1.08546 1.01204 1.21193 0.97545 1.07886 0.98189 1.22249 0.87383 1.07104 0.98418 1.22592 1.01194 0.93625 0.83555 1.23556 0.75004 0.98096 1.02838 0.83495 1.47381 1.10640 1.36432 1.11324 1.23729 0.95782 1.07314 0.91957 1.24107 0.96797 1.03340 0.98004 1.75042 1.17983 1.18144 1.06287 1.78322 0.92379 1.16079 1.21813 0.94234 0.78688 0.92621 0.89116 0.88039 0.87056 0.87874 0.88299 0.80777 0.84208 0.83977 0.80228 0.89029 0.84968 0.78579 0.76983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.53 13.06 21.65 0.28 -58.24 16 2 C -0.07 -3.67 5.50 84.86 0.47 -3.20 16 3 Si 0.97 43.97 29.55 68.60 2.03 45.99 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 7 C -0.25 -12.49 9.98 84.03 0.84 -11.65 16 8 H 0.09 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.73 -32.45 5.13 -317.30 -1.63 -34.08 16 10 C 0.16 4.65 3.46 46.18 0.16 4.81 16 11 H 0.11 2.88 8.12 -2.38 -0.02 2.86 16 12 C 0.08 2.04 5.86 86.73 0.51 2.55 16 13 N -0.61 -11.95 2.17 -811.80 -1.76 -13.71 16 14 C 0.54 10.54 7.61 87.66 0.67 11.20 16 15 O -0.57 -13.72 16.24 -3.01 -0.05 -13.77 16 16 C -0.15 -2.30 5.22 29.85 0.16 -2.14 16 17 C 0.13 1.94 5.38 86.38 0.46 2.40 16 18 N -0.45 -8.07 2.75 -524.47 -1.44 -9.51 16 19 C -0.03 -0.50 11.43 83.21 0.95 0.45 16 20 C -0.22 -4.60 10.86 22.14 0.24 -4.36 16 21 C -0.22 -4.45 10.86 22.14 0.24 -4.20 16 22 C -0.02 -0.39 11.43 83.21 0.95 0.56 16 23 C 0.11 2.06 5.89 86.86 0.51 2.57 16 24 C 0.11 2.73 4.06 46.39 0.19 2.91 16 25 H 0.15 3.30 8.14 -2.39 -0.02 3.28 16 26 N -0.26 -8.56 2.46 -320.57 -0.79 -9.35 16 27 C -0.04 -1.06 10.01 83.49 0.84 -0.22 16 28 C -0.06 -2.09 12.05 83.73 1.01 -1.08 16 29 N -0.31 -12.75 12.41 -58.25 -0.72 -13.47 16 30 N -0.11 -4.41 12.18 37.02 0.45 -3.96 16 31 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 32 H 0.38 19.35 5.90 -92.71 -0.55 18.80 16 33 H 0.06 1.67 8.03 -2.38 -0.02 1.65 16 34 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.10 1.46 8.10 -2.39 -0.02 1.44 16 38 H 0.10 1.49 8.10 -2.39 -0.02 1.47 16 39 H 0.18 2.61 8.06 -2.91 -0.02 2.58 16 40 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 41 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 42 H 0.18 2.26 8.06 -2.91 -0.02 2.23 16 43 H 0.09 1.73 7.77 -2.39 -0.02 1.72 16 44 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.20 4.70 6.78 -2.91 -0.02 4.68 16 46 H 0.21 5.09 8.06 -2.91 -0.02 5.07 16 Total: -1.00 -74.75 386.79 5.01 -69.74 By element: Atomic # 1 Polarization: 39.33 SS G_CDS: 0.45 Total: 39.78 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 8.19 Total: 0.59 kcal Atomic # 7 Polarization: -136.72 SS G_CDS: -5.61 Total: -142.32 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.05 Total: -13.77 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -74.75 5.01 -69.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070302233.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.625 kcal (2) G-P(sol) polarization free energy of solvation -74.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds