Wall clock time and date at job start Wed Apr 1 2020 03:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.51131 * 2 1 4 4 C 1.53285 * 109.55397 * 239.87851 * 2 1 3 5 5 N 1.47172 * 108.52495 * 186.97933 * 4 2 1 6 6 C 1.34781 * 121.07241 * 231.32049 * 5 4 2 7 7 O 1.21279 * 119.99754 * 180.02562 * 6 5 4 8 8 C 1.50697 * 120.00279 * 359.97438 * 6 5 4 9 9 C 1.53776 * 113.61813 * 277.49911 * 8 6 5 10 10 C 1.53774 * 87.08455 * 220.01919 * 9 8 6 11 11 F 1.39903 * 113.61539 * 270.88260 * 10 9 8 12 12 F 1.39901 * 113.69310 * 139.98808 * 10 9 8 13 13 C 1.53780 * 113.61178 * 180.02562 * 8 6 5 14 14 C 1.47317 * 117.84575 * 51.29929 * 5 4 2 15 15 C 1.52355 * 108.46195 * 310.86195 * 14 5 4 16 16 C 1.54376 * 110.36762 * 173.36341 * 15 14 5 17 17 C 1.54456 * 103.04556 * 152.47486 * 16 15 14 18 18 N 1.47090 * 107.29193 * 338.41519 * 17 16 15 19 19 C 1.36932 * 125.63069 * 178.99029 * 18 17 16 20 20 H 1.08004 * 120.00455 * 174.84128 * 19 18 17 21 21 C 1.38816 * 120.00044 * 354.84191 * 19 18 17 22 22 N 1.31617 * 119.99702 * 7.06199 * 21 19 18 23 23 Si 1.86799 * 120.00150 * 187.05586 * 21 19 18 24 24 H 1.48507 * 109.46945 * 94.98883 * 23 21 19 25 25 H 1.48500 * 109.47239 * 214.98632 * 23 21 19 26 26 H 1.48495 * 109.47287 * 334.99313 * 23 21 19 27 27 C 1.47573 * 108.73739 * 359.00826 * 18 17 16 28 28 O 1.41871 * 111.48320 * 49.88104 * 15 14 5 29 29 H 1.08999 * 109.47412 * 299.89707 * 1 2 3 30 30 H 1.09003 * 109.47382 * 59.89767 * 1 2 3 31 31 H 1.09001 * 109.47062 * 179.89932 * 1 2 3 32 32 H 1.08999 * 109.62420 * 306.68981 * 4 2 1 33 33 H 1.09001 * 109.62958 * 67.26070 * 4 2 1 34 34 H 1.08999 * 112.84659 * 48.80460 * 8 6 5 35 35 H 1.09005 * 113.61384 * 334.56684 * 9 8 6 36 36 H 1.08993 * 113.61750 * 105.46502 * 9 8 6 37 37 H 1.08998 * 113.61591 * 254.52684 * 13 8 6 38 38 H 1.08990 * 113.61882 * 25.34833 * 13 8 6 39 39 H 1.09000 * 109.63473 * 191.16689 * 14 5 4 40 40 H 1.09002 * 109.63882 * 70.55622 * 14 5 4 41 41 H 1.09004 * 110.73789 * 34.03535 * 16 15 14 42 42 H 1.09006 * 110.73226 * 270.90812 * 16 15 14 43 43 H 1.09000 * 109.88115 * 97.83369 * 17 16 15 44 44 H 1.08999 * 109.88439 * 218.99017 * 17 16 15 45 45 H 0.97010 * 119.99784 * 179.97438 * 22 21 19 46 46 H 1.09003 * 110.36970 * 142.14144 * 27 18 17 47 47 H 1.09003 * 110.37690 * 264.36774 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0430 -0.7249 -1.2494 5 7 3.5048 -0.8600 -1.1444 6 6 4.3134 -0.4694 -2.1495 7 8 5.5154 -0.5901 -2.0424 8 6 3.7240 0.1163 -3.4066 9 6 3.2366 -0.9424 -4.4098 10 6 3.8147 -0.0455 -5.5172 11 9 2.9067 0.9020 -6.0020 12 9 4.4561 -0.7554 -6.5380 13 6 4.7775 0.5105 -4.4553 14 6 4.0554 -1.4356 0.0948 15 6 3.4214 -0.7212 1.2818 16 6 3.8407 -1.3996 2.6037 17 6 3.7603 -0.2464 3.6281 18 7 3.8512 1.0141 2.8756 19 6 3.7988 2.2712 3.4158 20 1 3.9581 3.1358 2.7884 21 6 3.5410 2.4346 4.7700 22 7 3.4849 1.3838 5.5606 23 14 3.2740 4.1456 5.4703 24 1 1.8190 4.4387 5.5198 25 1 3.8394 4.2130 6.8418 26 1 3.9511 5.1454 4.6060 27 6 4.0076 0.7002 1.4421 28 8 2.0080 -0.6766 1.1669 29 1 -0.3634 0.5122 0.8909 30 1 -0.3634 0.5154 -0.8891 31 1 -0.3633 -1.0277 -0.0018 32 1 1.5875 -1.7131 -1.3122 33 1 1.7916 -0.1457 -2.1379 34 1 2.9926 0.8992 -3.2063 35 1 3.7459 -1.9014 -4.3145 36 1 2.1518 -1.0402 -4.4490 37 1 4.9369 1.5861 -4.5312 38 1 5.7083 -0.0504 -4.3714 39 1 5.1359 -1.2935 0.1161 40 1 3.8218 -2.4993 0.1400 41 1 4.8584 -1.7838 2.5344 42 1 3.1456 -2.1974 2.8655 43 1 2.8115 -0.2912 4.1628 44 1 4.5888 -0.3180 4.3327 45 1 3.3051 1.4979 6.5070 46 1 3.4482 1.4116 0.8347 47 1 5.0615 0.7113 1.1640 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071151004.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:32 Heat of formation + Delta-G solvation = -115.355789 kcal Electronic energy + Delta-G solvation = -32204.563060 eV Core-core repulsion = 27639.221938 eV Total energy + Delta-G solvation = -4565.341123 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.16990 -47.49462 -40.90517 -39.34403 -37.09899 -36.39322 -34.70479 -33.18010 -31.35933 -29.57256 -28.67588 -26.76939 -26.71045 -26.55582 -25.19257 -23.57827 -21.92976 -21.19618 -20.19372 -19.62873 -19.00803 -18.18042 -17.20137 -17.05188 -16.97659 -16.57838 -16.50817 -15.86594 -15.35082 -14.86547 -14.67389 -14.56553 -14.36498 -14.18073 -13.93618 -13.75930 -13.70772 -13.47334 -13.15006 -12.97244 -12.63371 -12.32074 -12.30252 -12.17641 -12.01850 -11.87915 -11.85466 -11.67964 -11.55064 -11.06750 -10.90742 -10.87318 -10.86056 -10.48381 -10.25103 -10.20967 -10.09147 -9.77156 -9.71241 -9.58271 -8.56603 -8.44150 -6.81266 -5.71791 -3.03337 2.32965 2.68067 3.04580 3.36136 3.40070 3.45232 3.47299 3.80381 3.82792 3.88191 3.93887 4.42629 4.49596 4.62470 4.76238 4.87063 4.96429 5.00912 5.02079 5.07313 5.09744 5.16217 5.31876 5.34938 5.43330 5.48979 5.55728 5.57586 5.65941 5.68923 5.81865 5.85108 6.01318 6.13925 6.16188 6.23146 6.39667 6.45637 6.57668 6.61962 7.19569 7.52412 7.63083 7.67799 7.83540 7.95206 8.26033 9.21986 9.82188 10.48561 11.40443 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.016519 B = 0.002923 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.562667 B = 9576.247189 C = 9793.914351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.070 3.930 3 H 0.069 0.931 4 C 0.077 3.923 5 N -0.607 5.607 6 C 0.531 3.469 7 O -0.532 6.532 8 C -0.134 4.134 9 C -0.148 4.148 10 C 0.256 3.744 11 F -0.178 7.178 12 F -0.188 7.188 13 C -0.142 4.142 14 C 0.098 3.902 15 C 0.091 3.909 16 C -0.130 4.130 17 C 0.182 3.818 18 N -0.599 5.599 19 C -0.229 4.229 20 H 0.075 0.925 21 C -0.005 4.005 22 N -0.918 5.918 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.122 3.878 28 O -0.346 6.346 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.127 0.873 35 H 0.117 0.883 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.127 0.873 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.052 0.948 44 H 0.042 0.958 45 H 0.252 0.748 46 H 0.038 0.962 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.230 -7.171 -20.073 21.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.011 3.989 3 H 0.087 0.913 4 C -0.046 4.046 5 N -0.340 5.340 6 C 0.318 3.682 7 O -0.409 6.409 8 C -0.155 4.155 9 C -0.186 4.186 10 C 0.220 3.780 11 F -0.158 7.158 12 F -0.168 7.168 13 C -0.180 4.180 14 C -0.025 4.025 15 C 0.050 3.950 16 C -0.168 4.168 17 C 0.057 3.943 18 N -0.325 5.325 19 C -0.357 4.357 20 H 0.093 0.907 21 C -0.202 4.202 22 N -0.565 5.565 23 Si 0.740 3.260 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.005 4.005 28 O -0.264 6.264 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.145 0.855 35 H 0.136 0.864 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.145 0.855 39 H 0.121 0.879 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.070 0.930 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -3.728 -7.211 -19.693 21.301 hybrid contribution -0.192 1.115 0.067 1.133 sum -3.920 -6.096 -19.626 20.922 Atomic orbital electron populations 1.21689 0.92403 1.02845 1.02920 1.22443 0.95355 0.96295 0.84826 0.91343 1.22594 0.79916 1.02099 0.99990 1.48171 1.06875 1.62169 1.16754 1.19964 0.86589 0.77826 0.83789 1.90718 1.14359 1.55243 1.80543 1.22553 1.00237 0.99941 0.92798 1.24034 1.04130 0.99126 0.91317 1.21954 0.87746 0.85855 0.82488 1.93034 1.67901 1.65161 1.89752 1.93026 1.81743 1.78400 1.63670 1.23998 0.98970 1.04888 0.90144 1.22221 1.00736 0.97244 0.82280 1.22418 0.81275 0.97099 0.94225 1.22841 1.00165 0.99951 0.93861 1.21168 1.01218 0.81311 0.90577 1.44404 1.86083 1.02519 0.99477 1.19010 1.41745 0.82656 0.92262 0.90665 1.24796 1.01907 0.97351 0.96104 1.69971 1.55180 1.27282 1.04080 0.86140 0.77889 0.83619 0.78383 1.21627 1.21740 1.20692 1.22000 0.97000 0.92924 0.88556 1.87849 1.20075 1.76519 1.41989 0.90935 0.91253 0.91843 0.90297 0.89191 0.85472 0.86435 0.87902 0.88096 0.85494 0.87904 0.90818 0.90884 0.90880 0.93005 0.93975 0.93751 0.94410 0.95788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.57 37.16 0.36 -1.14 16 2 C 0.07 0.92 3.20 -26.58 -0.09 0.83 16 3 H 0.07 1.02 6.29 -51.93 -0.33 0.70 16 4 C 0.08 0.77 5.82 -3.53 -0.02 0.75 16 5 N -0.61 -7.52 2.97 -172.70 -0.51 -8.03 16 6 C 0.53 6.61 7.24 -10.98 -0.08 6.53 16 7 O -0.53 -8.48 15.39 5.56 0.09 -8.39 16 8 C -0.13 -1.16 2.75 -90.96 -0.25 -1.41 16 9 C -0.15 -1.03 7.35 -25.92 -0.19 -1.22 16 10 C 0.26 2.19 3.27 -25.94 -0.08 2.10 16 11 F -0.18 -1.68 17.38 2.25 0.04 -1.64 16 12 F -0.19 -1.90 17.41 2.25 0.04 -1.86 16 13 C -0.14 -1.23 7.19 -25.94 -0.19 -1.42 16 14 C 0.10 1.41 5.31 -3.92 -0.02 1.38 16 15 C 0.09 1.59 0.84 -89.39 -0.07 1.52 16 16 C -0.13 -2.39 6.10 -25.25 -0.15 -2.55 16 17 C 0.18 4.43 5.39 -2.96 -0.02 4.42 16 18 N -0.60 -15.44 3.40 -170.01 -0.58 -16.02 16 19 C -0.23 -6.44 10.27 -15.06 -0.15 -6.60 16 20 H 0.08 2.07 7.84 -52.48 -0.41 1.65 16 21 C -0.01 -0.14 5.48 -17.43 -0.10 -0.24 16 22 N -0.92 -27.03 10.36 55.49 0.57 -26.46 16 23 Si 0.91 22.21 29.56 -169.99 -5.02 17.18 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 C 0.12 2.57 6.22 -2.62 -0.02 2.56 16 28 O -0.35 -5.98 9.92 -35.22 -0.35 -6.33 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.64 5.83 -51.93 -0.30 0.33 16 34 H 0.13 0.92 7.19 -51.93 -0.37 0.54 16 35 H 0.12 0.81 8.09 -51.93 -0.42 0.39 16 36 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.13 1.22 7.43 -51.93 -0.39 0.83 16 39 H 0.10 1.61 6.86 -51.93 -0.36 1.25 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.07 1.21 8.00 -51.93 -0.42 0.80 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.05 1.42 7.30 -51.93 -0.38 1.04 16 44 H 0.04 1.12 7.60 -51.93 -0.39 0.73 16 45 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16 46 H 0.04 0.80 6.14 -51.93 -0.32 0.48 16 47 H 0.02 0.53 7.83 -51.93 -0.41 0.12 16 LS Contribution 373.57 15.07 5.63 5.63 Total: -1.00 -33.32 373.57 -8.18 -41.50 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -7.01 Total: -1.09 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -1.07 Total: 5.51 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: -0.52 Total: -50.51 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.26 Total: -14.73 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.08 Total: -3.50 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.32 -8.18 -41.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071151004.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.859 kcal (2) G-P(sol) polarization free energy of solvation -33.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds