Wall clock time and date at job start Wed Apr 1 2020 03:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.51131 * 2 1 4 4 C 1.53285 * 109.55397 * 239.87851 * 2 1 3 5 5 N 1.47172 * 108.52495 * 186.97933 * 4 2 1 6 6 C 1.34781 * 121.07241 * 231.32049 * 5 4 2 7 7 O 1.21279 * 119.99754 * 180.02562 * 6 5 4 8 8 C 1.50697 * 120.00279 * 359.97438 * 6 5 4 9 9 C 1.53776 * 113.61813 * 277.49911 * 8 6 5 10 10 C 1.53774 * 87.08455 * 220.01919 * 9 8 6 11 11 F 1.39903 * 113.61539 * 270.88260 * 10 9 8 12 12 F 1.39901 * 113.69310 * 139.98808 * 10 9 8 13 13 C 1.53780 * 113.61178 * 180.02562 * 8 6 5 14 14 C 1.47317 * 117.84575 * 51.29929 * 5 4 2 15 15 C 1.52355 * 108.46195 * 310.86195 * 14 5 4 16 16 C 1.54376 * 110.36762 * 173.36341 * 15 14 5 17 17 C 1.54456 * 103.04556 * 152.47486 * 16 15 14 18 18 N 1.47090 * 107.29193 * 338.41519 * 17 16 15 19 19 C 1.36932 * 125.63069 * 178.99029 * 18 17 16 20 20 H 1.08004 * 120.00455 * 174.84128 * 19 18 17 21 21 C 1.38816 * 120.00044 * 354.84191 * 19 18 17 22 22 N 1.31617 * 119.99702 * 7.06199 * 21 19 18 23 23 Si 1.86799 * 120.00150 * 187.05586 * 21 19 18 24 24 H 1.48507 * 109.46945 * 94.98883 * 23 21 19 25 25 H 1.48500 * 109.47239 * 214.98632 * 23 21 19 26 26 H 1.48495 * 109.47287 * 334.99313 * 23 21 19 27 27 C 1.47573 * 108.73739 * 359.00826 * 18 17 16 28 28 O 1.41871 * 111.48320 * 49.88104 * 15 14 5 29 29 H 1.08999 * 109.47412 * 299.89707 * 1 2 3 30 30 H 1.09003 * 109.47382 * 59.89767 * 1 2 3 31 31 H 1.09001 * 109.47062 * 179.89932 * 1 2 3 32 32 H 1.08999 * 109.62420 * 306.68981 * 4 2 1 33 33 H 1.09001 * 109.62958 * 67.26070 * 4 2 1 34 34 H 1.08999 * 112.84659 * 48.80460 * 8 6 5 35 35 H 1.09005 * 113.61384 * 334.56684 * 9 8 6 36 36 H 1.08993 * 113.61750 * 105.46502 * 9 8 6 37 37 H 1.08998 * 113.61591 * 254.52684 * 13 8 6 38 38 H 1.08990 * 113.61882 * 25.34833 * 13 8 6 39 39 H 1.09000 * 109.63473 * 191.16689 * 14 5 4 40 40 H 1.09002 * 109.63882 * 70.55622 * 14 5 4 41 41 H 1.09004 * 110.73789 * 34.03535 * 16 15 14 42 42 H 1.09006 * 110.73226 * 270.90812 * 16 15 14 43 43 H 1.09000 * 109.88115 * 97.83369 * 17 16 15 44 44 H 1.08999 * 109.88439 * 218.99017 * 17 16 15 45 45 H 0.97010 * 119.99784 * 179.97438 * 22 21 19 46 46 H 1.09003 * 110.36970 * 142.14144 * 27 18 17 47 47 H 1.09003 * 110.37690 * 264.36774 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0430 -0.7249 -1.2494 5 7 3.5048 -0.8600 -1.1444 6 6 4.3134 -0.4694 -2.1495 7 8 5.5154 -0.5901 -2.0424 8 6 3.7240 0.1163 -3.4066 9 6 3.2366 -0.9424 -4.4098 10 6 3.8147 -0.0455 -5.5172 11 9 2.9067 0.9020 -6.0020 12 9 4.4561 -0.7554 -6.5380 13 6 4.7775 0.5105 -4.4553 14 6 4.0554 -1.4356 0.0948 15 6 3.4214 -0.7212 1.2818 16 6 3.8407 -1.3996 2.6037 17 6 3.7603 -0.2464 3.6281 18 7 3.8512 1.0141 2.8756 19 6 3.7988 2.2712 3.4158 20 1 3.9581 3.1358 2.7884 21 6 3.5410 2.4346 4.7700 22 7 3.4849 1.3838 5.5606 23 14 3.2740 4.1456 5.4703 24 1 1.8190 4.4387 5.5198 25 1 3.8394 4.2130 6.8418 26 1 3.9511 5.1454 4.6060 27 6 4.0076 0.7002 1.4421 28 8 2.0080 -0.6766 1.1669 29 1 -0.3634 0.5122 0.8909 30 1 -0.3634 0.5154 -0.8891 31 1 -0.3633 -1.0277 -0.0018 32 1 1.5875 -1.7131 -1.3122 33 1 1.7916 -0.1457 -2.1379 34 1 2.9926 0.8992 -3.2063 35 1 3.7459 -1.9014 -4.3145 36 1 2.1518 -1.0402 -4.4490 37 1 4.9369 1.5861 -4.5312 38 1 5.7083 -0.0504 -4.3714 39 1 5.1359 -1.2935 0.1161 40 1 3.8218 -2.4993 0.1400 41 1 4.8584 -1.7838 2.5344 42 1 3.1456 -2.1974 2.8655 43 1 2.8115 -0.2912 4.1628 44 1 4.5888 -0.3180 4.3327 45 1 3.3051 1.4979 6.5070 46 1 3.4482 1.4116 0.8347 47 1 5.0615 0.7113 1.1640 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071151004.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:31 Heat of formation + Delta-G solvation = -136.689871 kcal Electronic energy + Delta-G solvation = -32205.488175 eV Core-core repulsion = 27639.221938 eV Total energy + Delta-G solvation = -4566.266238 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.85365 -48.19214 -41.96053 -40.48675 -38.02050 -37.83164 -35.82753 -34.84114 -32.95218 -31.13913 -30.14077 -28.08696 -27.51687 -27.28770 -26.69992 -25.00222 -23.15692 -22.13402 -21.86709 -20.68549 -20.05285 -19.10876 -18.87124 -18.03918 -17.88724 -17.63563 -17.28988 -16.80264 -16.79064 -16.37146 -15.97374 -15.72541 -15.47664 -15.26549 -15.06180 -15.02973 -14.81703 -14.47469 -14.16669 -13.99281 -13.78838 -13.65126 -13.56682 -13.16082 -13.10542 -13.03935 -12.92234 -12.82567 -12.68289 -12.55375 -12.40015 -12.20315 -12.05740 -12.02851 -11.95849 -11.73212 -11.52313 -11.47228 -10.93006 -10.81179 -10.69714 -9.54931 -8.92207 -7.88941 -5.23245 1.41160 1.42674 1.44802 1.53699 1.75711 2.41053 2.46057 2.64356 2.72967 3.14512 3.19653 3.25934 3.29359 3.47544 3.61051 3.72920 3.75552 3.90758 4.01982 4.08571 4.16563 4.26140 4.36690 4.39913 4.45169 4.47247 4.55565 4.61595 4.64372 4.68827 4.70258 4.72996 4.80877 4.92500 4.95853 5.02121 5.06947 5.13226 5.27172 5.36001 5.38895 5.62168 5.73792 6.15674 6.26687 6.39998 7.00621 7.06664 7.72837 8.38176 9.21948 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.016519 B = 0.002923 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.562667 B = 9576.247189 C = 9793.914351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.059 3.941 3 H 0.043 0.957 4 C 0.083 3.917 5 N -0.609 5.609 6 C 0.529 3.471 7 O -0.574 6.574 8 C -0.129 4.129 9 C -0.132 4.132 10 C 0.254 3.746 11 F -0.181 7.181 12 F -0.199 7.199 13 C -0.147 4.147 14 C 0.106 3.894 15 C 0.108 3.892 16 C -0.119 4.119 17 C 0.190 3.810 18 N -0.620 5.620 19 C -0.247 4.247 20 H 0.076 0.924 21 C -0.061 4.061 22 N -0.946 5.946 23 Si 0.977 3.023 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.269 1.269 27 C 0.121 3.879 28 O -0.369 6.369 29 H 0.043 0.957 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.127 0.873 34 H 0.150 0.850 35 H 0.120 0.880 36 H 0.134 0.866 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.013 0.987 44 H 0.007 0.993 45 H 0.248 0.752 46 H 0.036 0.964 47 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.938 -7.673 -22.620 24.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.001 3.999 3 H 0.061 0.939 4 C -0.039 4.039 5 N -0.341 5.341 6 C 0.318 3.682 7 O -0.453 6.453 8 C -0.150 4.150 9 C -0.170 4.170 10 C 0.218 3.782 11 F -0.162 7.162 12 F -0.180 7.180 13 C -0.186 4.186 14 C -0.017 4.017 15 C 0.066 3.934 16 C -0.157 4.157 17 C 0.065 3.935 18 N -0.346 5.346 19 C -0.376 4.376 20 H 0.093 0.907 21 C -0.254 4.254 22 N -0.594 5.594 23 Si 0.805 3.195 24 H -0.212 1.212 25 H -0.219 1.219 26 H -0.194 1.194 27 C -0.005 4.005 28 O -0.289 6.289 29 H 0.063 0.937 30 H 0.123 0.877 31 H 0.096 0.904 32 H 0.122 0.878 33 H 0.145 0.855 34 H 0.167 0.833 35 H 0.138 0.862 36 H 0.152 0.848 37 H 0.124 0.876 38 H 0.132 0.868 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.031 0.969 44 H 0.025 0.975 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -5.457 -7.713 -22.286 24.206 hybrid contribution 0.360 1.333 0.844 1.618 sum -5.098 -6.381 -21.442 22.945 Atomic orbital electron populations 1.21706 0.90299 1.03901 1.03311 1.22751 0.97002 0.95140 0.85047 0.93853 1.22758 0.78070 1.03677 0.99385 1.48259 1.08089 1.61803 1.15904 1.20590 0.86071 0.76922 0.84627 1.90706 1.16327 1.56800 1.81477 1.22603 1.00516 1.01014 0.90871 1.24031 1.06006 0.98219 0.88774 1.22042 0.87751 0.86155 0.82277 1.93029 1.67899 1.65444 1.89849 1.93005 1.82085 1.78636 1.64236 1.24013 0.98770 1.05189 0.90593 1.21961 0.99566 0.98171 0.82004 1.22140 0.81893 0.94304 0.95021 1.22722 1.02116 0.98066 0.92827 1.20891 0.97657 0.83352 0.91600 1.44701 1.85900 1.02292 1.01732 1.19364 1.41537 0.83943 0.92752 0.90660 1.25649 1.02068 1.01236 0.96466 1.70194 1.56054 1.29262 1.03920 0.85085 0.77737 0.79298 0.77370 1.21181 1.21873 1.19410 1.22118 0.96612 0.95756 0.85993 1.87823 1.19451 1.76968 1.44620 0.93750 0.87650 0.90425 0.87770 0.85475 0.83285 0.86201 0.84782 0.87554 0.86791 0.89425 0.88281 0.88876 0.88994 0.96856 0.97506 0.94273 0.94611 0.96697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 9.57 71.98 0.69 -1.78 16 2 C 0.06 1.41 3.20 30.69 0.10 1.51 16 3 H 0.04 1.26 6.29 -2.39 -0.01 1.24 16 4 C 0.08 1.29 5.82 86.35 0.50 1.80 16 5 N -0.61 -13.38 2.97 -818.69 -2.43 -15.81 16 6 C 0.53 11.98 7.24 87.66 0.63 12.62 16 7 O -0.57 -17.88 15.39 -3.03 -0.05 -17.93 16 8 C -0.13 -1.82 2.75 -11.02 -0.03 -1.85 16 9 C -0.13 -1.30 7.35 31.12 0.23 -1.07 16 10 C 0.25 3.67 3.27 31.11 0.10 3.77 16 11 F -0.18 -2.88 17.38 44.97 0.78 -2.10 16 12 F -0.20 -3.66 17.41 44.97 0.78 -2.88 16 13 C -0.15 -2.30 7.19 31.11 0.22 -2.08 16 14 C 0.11 2.86 5.31 86.01 0.46 3.32 16 15 C 0.11 3.70 0.84 -10.00 -0.01 3.69 16 16 C -0.12 -4.39 6.10 31.56 0.19 -4.20 16 17 C 0.19 9.70 5.39 86.76 0.47 10.17 16 18 N -0.62 -33.24 3.40 -691.79 -2.35 -35.59 16 19 C -0.25 -14.39 10.27 84.04 0.86 -13.53 16 20 H 0.08 4.24 7.84 -2.91 -0.02 4.22 16 21 C -0.06 -3.55 5.48 84.86 0.46 -3.08 16 22 N -0.95 -58.05 10.36 21.65 0.22 -57.83 16 23 Si 0.98 46.65 29.56 68.60 2.03 48.68 16 24 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 25 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 26 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 27 C 0.12 5.21 6.22 86.72 0.54 5.75 16 28 O -0.37 -12.37 9.92 -148.95 -1.48 -13.85 16 29 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.13 1.06 5.83 -2.39 -0.01 1.04 16 34 H 0.15 1.48 7.19 -2.39 -0.02 1.46 16 35 H 0.12 1.21 8.09 -2.38 -0.02 1.19 16 36 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.11 2.12 7.43 -2.39 -0.02 2.10 16 39 H 0.09 2.67 6.86 -2.39 -0.02 2.65 16 40 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.09 3.04 8.00 -2.38 -0.02 3.03 16 42 H 0.09 3.05 8.14 -2.38 -0.02 3.03 16 43 H 0.01 0.76 7.30 -2.39 -0.02 0.75 16 44 H 0.01 0.38 7.60 -2.39 -0.02 0.37 16 45 H 0.25 14.72 8.31 -92.70 -0.77 13.95 16 46 H 0.04 1.54 6.14 -2.39 -0.01 1.52 16 47 H 0.02 0.68 7.83 -2.39 -0.02 0.67 16 Total: -1.00 -77.51 373.57 3.92 -73.59 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 0.98 Total: 8.68 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: 5.42 Total: 15.03 kcal Atomic # 7 Polarization: -104.66 SS G_CDS: -4.56 Total: -109.23 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -1.52 Total: -31.78 kcal Atomic # 9 Polarization: -6.54 SS G_CDS: 1.56 Total: -4.98 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -77.51 3.92 -73.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071151004.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.095 kcal (2) G-P(sol) polarization free energy of solvation -77.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds