Wall clock time and date at job start Wed Apr 1 2020 03:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.51388 * 2 1 4 4 C 1.53280 * 109.51420 * 120.15913 * 2 1 3 5 5 N 1.47171 * 108.54208 * 172.97940 * 4 2 1 6 6 C 1.34774 * 121.07981 * 128.70468 * 5 4 2 7 7 O 1.21274 * 119.99869 * 180.02562 * 6 5 4 8 8 C 1.50700 * 119.99827 * 359.97438 * 6 5 4 9 9 C 1.53785 * 113.61561 * 277.49992 * 8 6 5 10 10 C 1.53784 * 87.08193 * 220.01798 * 9 8 6 11 11 F 1.39893 * 113.61739 * 270.88702 * 10 9 8 12 12 F 1.39896 * 113.68765 * 139.98876 * 10 9 8 13 13 C 1.53782 * 113.61332 * 180.02562 * 8 6 5 14 14 C 1.47329 * 117.84176 * 308.71937 * 5 4 2 15 15 C 1.52356 * 108.44450 * 49.14686 * 14 5 4 16 16 C 1.54376 * 110.39057 * 186.56110 * 15 14 5 17 17 C 1.54460 * 102.87024 * 207.59574 * 16 15 14 18 18 N 1.47085 * 107.29823 * 21.49636 * 17 16 15 19 19 C 1.36934 * 125.63083 * 180.95131 * 18 17 16 20 20 H 1.08003 * 119.99919 * 185.26290 * 19 18 17 21 21 C 1.38812 * 120.00275 * 5.26685 * 19 18 17 22 22 N 1.31622 * 119.99576 * 352.94591 * 21 19 18 23 23 Si 1.86797 * 120.00324 * 172.95106 * 21 19 18 24 24 H 1.48503 * 109.47144 * 275.00779 * 23 21 19 25 25 H 1.48499 * 109.47224 * 35.00226 * 23 21 19 26 26 H 1.48492 * 109.47411 * 155.00896 * 23 21 19 27 27 C 1.47577 * 108.73541 * 1.22126 * 18 17 16 28 28 O 1.41883 * 111.47249 * 310.05691 * 15 14 5 29 29 H 1.09008 * 109.47073 * 180.09819 * 1 2 3 30 30 H 1.08997 * 109.47106 * 300.09796 * 1 2 3 31 31 H 1.09002 * 109.47148 * 60.10557 * 1 2 3 32 32 H 1.09001 * 109.62359 * 292.69147 * 4 2 1 33 33 H 1.08996 * 109.62737 * 53.06719 * 4 2 1 34 34 H 1.08998 * 112.85159 * 48.81179 * 8 6 5 35 35 H 1.08996 * 113.61663 * 334.56944 * 9 8 6 36 36 H 1.09005 * 113.60806 * 105.47690 * 9 8 6 37 37 H 1.09003 * 113.61738 * 254.53068 * 13 8 6 38 38 H 1.08997 * 113.61647 * 25.35012 * 13 8 6 39 39 H 1.09004 * 109.63932 * 289.45735 * 14 5 4 40 40 H 1.09003 * 109.63999 * 168.83371 * 14 5 4 41 41 H 1.08997 * 110.73292 * 89.25269 * 16 15 14 42 42 H 1.09000 * 110.73290 * 325.93914 * 16 15 14 43 43 H 1.09002 * 109.87829 * 262.07416 * 17 16 15 44 44 H 1.09002 * 110.00407 * 140.99210 * 17 16 15 45 45 H 0.96998 * 119.99700 * 179.97438 * 22 21 19 46 46 H 1.09005 * 110.37406 * 95.27791 * 27 18 17 47 47 H 1.09000 * 110.37189 * 217.62184 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7258 1.2492 5 7 3.5037 -0.8625 1.1449 6 6 4.3123 -0.4737 2.1506 7 8 5.5142 -0.5948 2.0436 8 6 3.7229 0.1127 3.4075 9 6 3.3932 1.6104 3.2928 10 6 3.9250 1.7570 4.7283 11 9 2.9470 1.5673 5.7104 12 9 4.6817 2.9160 4.9318 13 6 4.7764 0.5059 4.4566 14 6 4.0543 -1.4379 -0.0946 15 6 3.4216 -0.7216 -1.2811 16 6 3.8417 -1.3975 -2.6039 17 6 3.7627 -0.2391 -3.6225 18 7 3.8519 1.0176 -2.8634 19 6 3.8012 2.2775 -3.3975 20 1 3.9608 3.1387 -2.7656 21 6 3.5448 2.4478 -4.7510 22 7 3.4881 1.4009 -5.5469 23 14 3.2802 4.1626 -5.4431 24 1 1.8577 4.5522 -5.2698 25 1 4.1489 5.1270 -4.7216 26 1 3.6234 4.1718 -6.8877 27 6 4.0116 0.6964 -1.4319 28 8 2.0081 -0.6766 -1.1671 29 1 -0.3634 -1.0277 0.0018 30 1 -0.3633 0.5153 0.8891 31 1 -0.3633 0.5122 -0.8909 32 1 1.7910 -0.1467 2.1378 33 1 1.5829 -1.7123 1.3134 34 1 2.9064 -0.4858 3.8114 35 1 3.9938 2.1340 2.5491 36 1 2.3270 1.8168 3.1991 37 1 4.8272 -0.1796 5.3026 38 1 5.7553 0.7262 4.0310 39 1 3.8193 -2.5013 -0.1408 40 1 5.1350 -1.2971 -0.1153 41 1 3.1450 -2.1927 -2.8691 42 1 4.8594 -1.7817 -2.5346 43 1 2.8148 -0.2814 -4.1591 44 1 4.5910 -0.3056 -4.3279 45 1 3.3085 1.5199 -6.4926 46 1 5.0664 0.7023 -1.1570 47 1 3.4549 1.4057 -0.8195 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071151005.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:36 Heat of formation + Delta-G solvation = -115.389938 kcal Electronic energy + Delta-G solvation = -32486.291790 eV Core-core repulsion = 27920.949187 eV Total energy + Delta-G solvation = -4565.342604 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.11965 -47.43910 -40.91106 -39.33066 -37.08074 -36.39987 -34.70188 -33.17976 -31.36053 -29.57145 -28.68454 -26.76117 -26.70017 -26.51406 -25.18325 -23.56638 -21.93264 -21.16104 -20.17850 -19.69710 -18.92431 -18.16667 -17.15961 -17.01778 -16.97510 -16.62901 -16.38872 -15.74278 -15.51949 -14.83376 -14.68290 -14.55048 -14.30614 -14.17458 -13.95599 -13.73636 -13.62593 -13.47785 -13.08293 -12.99588 -12.56752 -12.31451 -12.30772 -12.16296 -12.00340 -11.86200 -11.78873 -11.72896 -11.55727 -11.07218 -10.90550 -10.85781 -10.82338 -10.48682 -10.25156 -10.20722 -10.10568 -9.76931 -9.71376 -9.58796 -8.56421 -8.43908 -6.81495 -5.71759 -3.03423 2.34122 2.67572 3.09793 3.40329 3.40645 3.45296 3.46973 3.81539 3.85847 3.92242 3.97640 4.43782 4.49978 4.62336 4.80154 4.84600 5.00895 5.01343 5.06819 5.08259 5.15574 5.19507 5.32575 5.33882 5.43221 5.48998 5.55869 5.57258 5.66514 5.72528 5.81872 5.85546 6.01123 6.14005 6.16072 6.23178 6.39308 6.44982 6.56817 6.61571 7.20004 7.52141 7.62736 7.67595 7.83555 7.95583 8.26108 9.21887 9.82120 10.48385 11.40438 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012585 B = 0.003446 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.352281 B = 8123.645972 C = 8876.338326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.070 3.930 3 H 0.069 0.931 4 C 0.077 3.923 5 N -0.607 5.607 6 C 0.531 3.469 7 O -0.532 6.532 8 C -0.133 4.133 9 C -0.151 4.151 10 C 0.256 3.744 11 F -0.179 7.179 12 F -0.186 7.186 13 C -0.141 4.141 14 C 0.097 3.903 15 C 0.092 3.908 16 C -0.129 4.129 17 C 0.182 3.818 18 N -0.599 5.599 19 C -0.229 4.229 20 H 0.075 0.925 21 C -0.004 4.004 22 N -0.918 5.918 23 Si 0.909 3.091 24 H -0.288 1.288 25 H -0.282 1.282 26 H -0.291 1.291 27 C 0.121 3.879 28 O -0.345 6.345 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.127 0.873 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.052 0.948 44 H 0.042 0.958 45 H 0.252 0.748 46 H 0.025 0.975 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.161 -6.240 19.565 20.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.012 3.988 3 H 0.087 0.913 4 C -0.046 4.046 5 N -0.340 5.340 6 C 0.318 3.682 7 O -0.409 6.409 8 C -0.155 4.155 9 C -0.189 4.189 10 C 0.220 3.780 11 F -0.160 7.160 12 F -0.167 7.167 13 C -0.179 4.179 14 C -0.025 4.025 15 C 0.050 3.950 16 C -0.168 4.168 17 C 0.057 3.943 18 N -0.325 5.325 19 C -0.357 4.357 20 H 0.093 0.907 21 C -0.201 4.201 22 N -0.565 5.565 23 Si 0.739 3.261 24 H -0.216 1.216 25 H -0.208 1.208 26 H -0.217 1.217 27 C -0.005 4.005 28 O -0.264 6.264 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.145 0.855 39 H 0.092 0.908 40 H 0.121 0.879 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.070 0.930 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.042 0.958 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.659 -6.262 19.175 20.500 hybrid contribution -0.191 1.119 -0.060 1.137 sum -3.850 -5.143 19.114 20.165 Atomic orbital electron populations 1.21694 0.92425 1.02863 1.02909 1.22434 0.95336 0.96265 0.84796 0.91330 1.22581 0.79942 1.02104 1.00009 1.48164 1.06861 1.62153 1.16804 1.19984 0.86598 0.77724 0.83877 1.90716 1.14379 1.55104 1.80670 1.22546 1.00643 0.96981 0.95302 1.24089 1.05048 0.94787 0.94957 1.21943 0.84552 0.84259 0.87247 1.93022 1.63113 1.95099 1.64735 1.93035 1.75849 1.51819 1.95967 1.23993 1.00131 0.94560 0.99234 1.22238 1.00733 0.97276 0.82303 1.22367 0.81295 0.97073 0.94240 1.22840 1.00156 0.99969 0.93844 1.21168 1.01249 0.81320 0.90565 1.44407 1.86066 1.02505 0.99496 1.18983 1.41867 0.82591 0.92302 0.90706 1.24787 1.01875 0.97336 0.96074 1.69964 1.55131 1.27459 1.03967 0.86185 0.78031 0.83695 0.78152 1.21553 1.20800 1.21675 1.21963 0.96964 0.92951 0.88642 1.87858 1.20041 1.76525 1.41962 0.91835 0.91265 0.90926 0.89240 0.90330 0.85621 0.86118 0.87831 0.88262 0.85457 0.90829 0.87907 0.90845 0.90867 0.93001 0.93990 0.93723 0.95792 0.94380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.57 37.16 0.36 -1.14 16 2 C 0.07 0.92 3.20 -26.59 -0.09 0.84 16 3 H 0.07 1.01 6.28 -51.93 -0.33 0.68 16 4 C 0.08 0.77 5.77 -3.53 -0.02 0.75 16 5 N -0.61 -7.54 2.96 -172.70 -0.51 -8.06 16 6 C 0.53 6.62 7.24 -10.99 -0.08 6.54 16 7 O -0.53 -8.49 15.39 5.56 0.09 -8.41 16 8 C -0.13 -1.16 2.72 -90.96 -0.25 -1.41 16 9 C -0.15 -1.28 6.99 -25.92 -0.18 -1.46 16 10 C 0.26 2.39 3.27 -25.93 -0.08 2.31 16 11 F -0.18 -1.73 17.38 2.25 0.04 -1.69 16 12 F -0.19 -2.11 17.41 2.25 0.04 -2.07 16 13 C -0.14 -1.23 7.19 -25.93 -0.19 -1.42 16 14 C 0.10 1.40 5.30 -3.92 -0.02 1.38 16 15 C 0.09 1.59 0.83 -89.54 -0.07 1.52 16 16 C -0.13 -2.39 6.12 -25.24 -0.15 -2.54 16 17 C 0.18 4.41 5.40 -2.96 -0.02 4.40 16 18 N -0.60 -15.36 3.40 -170.18 -0.58 -15.94 16 19 C -0.23 -6.43 10.27 -15.06 -0.15 -6.59 16 20 H 0.08 2.04 7.84 -52.48 -0.41 1.63 16 21 C 0.00 -0.12 5.48 -17.43 -0.10 -0.21 16 22 N -0.92 -26.98 10.35 55.49 0.57 -26.40 16 23 Si 0.91 22.17 29.56 -169.99 -5.02 17.14 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 C 0.12 2.54 6.20 -2.76 -0.02 2.52 16 28 O -0.35 -5.95 9.92 -35.22 -0.35 -6.30 16 29 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 0.64 5.56 -51.93 -0.29 0.35 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.13 0.80 7.55 -51.93 -0.39 0.40 16 35 H 0.12 1.17 8.09 -51.93 -0.42 0.75 16 36 H 0.10 0.69 7.94 -51.93 -0.41 0.28 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.13 1.27 7.43 -51.93 -0.39 0.89 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.10 1.61 6.85 -51.93 -0.36 1.25 16 41 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.07 1.22 8.00 -51.93 -0.42 0.80 16 43 H 0.05 1.41 7.30 -51.93 -0.38 1.03 16 44 H 0.04 1.12 7.60 -51.93 -0.39 0.72 16 45 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.02 0.53 7.82 -51.93 -0.41 0.12 16 47 H 0.04 0.79 6.13 -51.93 -0.32 0.47 16 LS Contribution 372.91 15.07 5.62 5.62 Total: -1.00 -33.16 372.91 -8.17 -41.33 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -7.00 Total: -0.70 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -1.06 Total: 5.48 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -0.52 Total: -50.40 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.26 Total: -14.71 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.08 Total: -3.77 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.16 -8.17 -41.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071151005.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.063 kcal (2) G-P(sol) polarization free energy of solvation -33.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds