Wall clock time and date at job start Wed Apr 1 2020 03:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.51388 * 2 1 4 4 C 1.53280 * 109.51420 * 120.15913 * 2 1 3 5 5 N 1.47171 * 108.54208 * 172.97940 * 4 2 1 6 6 C 1.34774 * 121.07981 * 128.70468 * 5 4 2 7 7 O 1.21274 * 119.99869 * 180.02562 * 6 5 4 8 8 C 1.50700 * 119.99827 * 359.97438 * 6 5 4 9 9 C 1.53785 * 113.61561 * 277.49992 * 8 6 5 10 10 C 1.53784 * 87.08193 * 220.01798 * 9 8 6 11 11 F 1.39893 * 113.61739 * 270.88702 * 10 9 8 12 12 F 1.39896 * 113.68765 * 139.98876 * 10 9 8 13 13 C 1.53782 * 113.61332 * 180.02562 * 8 6 5 14 14 C 1.47329 * 117.84176 * 308.71937 * 5 4 2 15 15 C 1.52356 * 108.44450 * 49.14686 * 14 5 4 16 16 C 1.54376 * 110.39057 * 186.56110 * 15 14 5 17 17 C 1.54460 * 102.87024 * 207.59574 * 16 15 14 18 18 N 1.47085 * 107.29823 * 21.49636 * 17 16 15 19 19 C 1.36934 * 125.63083 * 180.95131 * 18 17 16 20 20 H 1.08003 * 119.99919 * 185.26290 * 19 18 17 21 21 C 1.38812 * 120.00275 * 5.26685 * 19 18 17 22 22 N 1.31622 * 119.99576 * 352.94591 * 21 19 18 23 23 Si 1.86797 * 120.00324 * 172.95106 * 21 19 18 24 24 H 1.48503 * 109.47144 * 275.00779 * 23 21 19 25 25 H 1.48499 * 109.47224 * 35.00226 * 23 21 19 26 26 H 1.48492 * 109.47411 * 155.00896 * 23 21 19 27 27 C 1.47577 * 108.73541 * 1.22126 * 18 17 16 28 28 O 1.41883 * 111.47249 * 310.05691 * 15 14 5 29 29 H 1.09008 * 109.47073 * 180.09819 * 1 2 3 30 30 H 1.08997 * 109.47106 * 300.09796 * 1 2 3 31 31 H 1.09002 * 109.47148 * 60.10557 * 1 2 3 32 32 H 1.09001 * 109.62359 * 292.69147 * 4 2 1 33 33 H 1.08996 * 109.62737 * 53.06719 * 4 2 1 34 34 H 1.08998 * 112.85159 * 48.81179 * 8 6 5 35 35 H 1.08996 * 113.61663 * 334.56944 * 9 8 6 36 36 H 1.09005 * 113.60806 * 105.47690 * 9 8 6 37 37 H 1.09003 * 113.61738 * 254.53068 * 13 8 6 38 38 H 1.08997 * 113.61647 * 25.35012 * 13 8 6 39 39 H 1.09004 * 109.63932 * 289.45735 * 14 5 4 40 40 H 1.09003 * 109.63999 * 168.83371 * 14 5 4 41 41 H 1.08997 * 110.73292 * 89.25269 * 16 15 14 42 42 H 1.09000 * 110.73290 * 325.93914 * 16 15 14 43 43 H 1.09002 * 109.87829 * 262.07416 * 17 16 15 44 44 H 1.09002 * 110.00407 * 140.99210 * 17 16 15 45 45 H 0.96998 * 119.99700 * 179.97438 * 22 21 19 46 46 H 1.09005 * 110.37406 * 95.27791 * 27 18 17 47 47 H 1.09000 * 110.37189 * 217.62184 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7258 1.2492 5 7 3.5037 -0.8625 1.1449 6 6 4.3123 -0.4737 2.1506 7 8 5.5142 -0.5948 2.0436 8 6 3.7229 0.1127 3.4075 9 6 3.3932 1.6104 3.2928 10 6 3.9250 1.7570 4.7283 11 9 2.9470 1.5673 5.7104 12 9 4.6817 2.9160 4.9318 13 6 4.7764 0.5059 4.4566 14 6 4.0543 -1.4379 -0.0946 15 6 3.4216 -0.7216 -1.2811 16 6 3.8417 -1.3975 -2.6039 17 6 3.7627 -0.2391 -3.6225 18 7 3.8519 1.0176 -2.8634 19 6 3.8012 2.2775 -3.3975 20 1 3.9608 3.1387 -2.7656 21 6 3.5448 2.4478 -4.7510 22 7 3.4881 1.4009 -5.5469 23 14 3.2802 4.1626 -5.4431 24 1 1.8577 4.5522 -5.2698 25 1 4.1489 5.1270 -4.7216 26 1 3.6234 4.1718 -6.8877 27 6 4.0116 0.6964 -1.4319 28 8 2.0081 -0.6766 -1.1671 29 1 -0.3634 -1.0277 0.0018 30 1 -0.3633 0.5153 0.8891 31 1 -0.3633 0.5122 -0.8909 32 1 1.7910 -0.1467 2.1378 33 1 1.5829 -1.7123 1.3134 34 1 2.9064 -0.4858 3.8114 35 1 3.9938 2.1340 2.5491 36 1 2.3270 1.8168 3.1991 37 1 4.8272 -0.1796 5.3026 38 1 5.7553 0.7262 4.0310 39 1 3.8193 -2.5013 -0.1408 40 1 5.1350 -1.2971 -0.1153 41 1 3.1450 -2.1927 -2.8691 42 1 4.8594 -1.7817 -2.5346 43 1 2.8148 -0.2814 -4.1591 44 1 4.5910 -0.3056 -4.3279 45 1 3.3085 1.5199 -6.4926 46 1 5.0664 0.7023 -1.1570 47 1 3.4549 1.4057 -0.8195 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071151005.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:35 Heat of formation + Delta-G solvation = -136.589797 kcal Electronic energy + Delta-G solvation = -32487.211085 eV Core-core repulsion = 27920.949187 eV Total energy + Delta-G solvation = -4566.261898 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.87421 -48.21306 -41.97581 -40.48679 -38.02217 -37.84900 -35.82693 -34.83970 -32.94745 -31.13668 -30.15372 -28.08420 -27.52932 -27.30984 -26.69531 -24.99991 -23.16407 -22.12737 -21.85103 -20.80122 -19.96065 -19.12706 -18.87131 -18.03179 -17.87875 -17.69325 -17.26482 -16.79911 -16.68361 -16.48101 -16.06467 -15.65913 -15.55509 -15.16186 -15.07328 -15.06177 -14.86608 -14.49354 -14.15230 -13.97390 -13.77626 -13.70519 -13.58365 -13.15191 -13.10447 -13.02557 -12.92383 -12.80677 -12.67787 -12.53476 -12.46565 -12.20671 -12.06952 -12.03188 -11.95655 -11.72542 -11.52621 -11.49029 -10.93334 -10.81497 -10.68959 -9.54885 -8.91827 -7.88486 -5.22758 1.40973 1.42872 1.45357 1.53295 1.74078 2.38692 2.46396 2.64809 2.70971 3.13416 3.20168 3.23812 3.29755 3.46938 3.61826 3.71572 3.76031 3.91031 4.02999 4.09922 4.16786 4.24712 4.32955 4.39773 4.42207 4.45527 4.54711 4.60167 4.63180 4.68005 4.69921 4.72877 4.81082 4.92774 4.95753 5.01909 5.06023 5.13403 5.27500 5.36130 5.39141 5.62380 5.74285 6.16125 6.26564 6.40194 7.00364 7.07051 7.73327 8.38575 9.22334 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012585 B = 0.003446 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.352281 B = 8123.645972 C = 8876.338326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.060 3.940 3 H 0.046 0.954 4 C 0.082 3.918 5 N -0.609 5.609 6 C 0.528 3.472 7 O -0.573 6.573 8 C -0.122 4.122 9 C -0.148 4.148 10 C 0.255 3.745 11 F -0.177 7.177 12 F -0.202 7.202 13 C -0.141 4.141 14 C 0.106 3.894 15 C 0.108 3.892 16 C -0.119 4.119 17 C 0.190 3.810 18 N -0.620 5.620 19 C -0.247 4.247 20 H 0.075 0.925 21 C -0.059 4.059 22 N -0.946 5.946 23 Si 0.976 3.024 24 H -0.283 1.283 25 H -0.272 1.272 26 H -0.292 1.292 27 C 0.121 3.879 28 O -0.369 6.369 29 H 0.076 0.924 30 H 0.105 0.895 31 H 0.044 0.956 32 H 0.126 0.874 33 H 0.103 0.897 34 H 0.164 0.836 35 H 0.103 0.897 36 H 0.129 0.871 37 H 0.119 0.881 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.013 0.987 44 H 0.006 0.994 45 H 0.248 0.752 46 H 0.015 0.985 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.868 -6.923 22.326 24.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.002 3.998 3 H 0.064 0.936 4 C -0.040 4.040 5 N -0.341 5.341 6 C 0.317 3.683 7 O -0.453 6.453 8 C -0.143 4.143 9 C -0.187 4.187 10 C 0.219 3.781 11 F -0.158 7.158 12 F -0.183 7.183 13 C -0.179 4.179 14 C -0.018 4.018 15 C 0.067 3.933 16 C -0.157 4.157 17 C 0.065 3.935 18 N -0.346 5.346 19 C -0.376 4.376 20 H 0.093 0.907 21 C -0.253 4.253 22 N -0.594 5.594 23 Si 0.804 3.196 24 H -0.210 1.210 25 H -0.197 1.197 26 H -0.218 1.218 27 C -0.005 4.005 28 O -0.288 6.288 29 H 0.095 0.905 30 H 0.124 0.876 31 H 0.063 0.937 32 H 0.144 0.856 33 H 0.121 0.879 34 H 0.181 0.819 35 H 0.122 0.878 36 H 0.148 0.852 37 H 0.137 0.863 38 H 0.127 0.873 39 H 0.116 0.884 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.031 0.969 44 H 0.024 0.976 45 H 0.057 0.943 46 H 0.033 0.967 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.388 -6.942 21.980 23.671 hybrid contribution 0.346 1.383 -0.904 1.688 sum -5.042 -5.559 21.076 22.372 Atomic orbital electron populations 1.21714 0.90346 1.03877 1.03341 1.22739 0.96955 0.95189 0.84937 0.93638 1.22738 0.78106 1.03626 0.99483 1.48254 1.08073 1.61785 1.15965 1.20620 0.86089 0.76835 0.84737 1.90705 1.16338 1.56642 1.81574 1.22632 1.01372 0.97098 0.93181 1.24088 1.06342 0.94406 0.93833 1.22034 0.84647 0.83859 0.87589 1.93025 1.62980 1.95035 1.64777 1.93005 1.76375 1.52803 1.96078 1.23975 0.99310 0.94694 0.99902 1.21976 0.99580 0.98166 0.82060 1.22084 0.81914 0.94358 0.94980 1.22723 1.02082 0.98066 0.92860 1.20887 0.97666 0.83395 0.91542 1.44703 1.85879 1.02253 1.01765 1.19342 1.41596 0.83898 0.92780 0.90667 1.25626 1.02054 1.01175 0.96419 1.70188 1.56053 1.29420 1.03783 0.85140 0.78053 0.79349 0.77068 1.20960 1.19655 1.21847 1.22082 0.96593 0.95733 0.86074 1.87832 1.19406 1.76993 1.44590 0.90508 0.87615 0.93705 0.85564 0.87930 0.81863 0.87839 0.85244 0.86276 0.87285 0.88376 0.89419 0.88993 0.88888 0.96858 0.97559 0.94284 0.96717 0.94409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.57 71.98 0.69 -1.78 16 2 C 0.06 1.43 3.20 30.69 0.10 1.53 16 3 H 0.05 1.29 6.28 -2.39 -0.01 1.28 16 4 C 0.08 1.29 5.77 86.35 0.50 1.79 16 5 N -0.61 -13.43 2.96 -818.68 -2.42 -15.86 16 6 C 0.53 11.97 7.24 87.66 0.63 12.60 16 7 O -0.57 -17.87 15.39 -3.01 -0.05 -17.91 16 8 C -0.12 -1.70 2.72 -11.01 -0.03 -1.73 16 9 C -0.15 -2.12 6.99 31.12 0.22 -1.90 16 10 C 0.26 4.16 3.27 31.11 0.10 4.26 16 11 F -0.18 -2.86 17.38 44.97 0.78 -2.08 16 12 F -0.20 -4.39 17.41 44.97 0.78 -3.61 16 13 C -0.14 -2.14 7.19 31.11 0.22 -1.92 16 14 C 0.11 2.85 5.30 86.01 0.46 3.30 16 15 C 0.11 3.69 0.83 -10.09 -0.01 3.69 16 16 C -0.12 -4.39 6.12 31.56 0.19 -4.19 16 17 C 0.19 9.69 5.40 86.76 0.47 10.16 16 18 N -0.62 -33.07 3.40 -692.33 -2.35 -35.42 16 19 C -0.25 -14.35 10.27 84.03 0.86 -13.49 16 20 H 0.08 4.22 7.84 -2.91 -0.02 4.20 16 21 C -0.06 -3.45 5.48 84.86 0.46 -2.98 16 22 N -0.95 -57.99 10.35 21.65 0.22 -57.77 16 23 Si 0.98 46.59 29.56 68.60 2.03 48.62 16 24 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 25 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 26 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 27 C 0.12 5.16 6.20 86.62 0.54 5.70 16 28 O -0.37 -12.31 9.92 -148.95 -1.48 -13.79 16 29 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.13 1.06 5.56 -2.39 -0.01 1.05 16 33 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.16 1.10 7.55 -2.39 -0.02 1.08 16 35 H 0.10 1.89 8.09 -2.39 -0.02 1.87 16 36 H 0.13 1.17 7.94 -2.38 -0.02 1.15 16 37 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.11 2.12 7.43 -2.39 -0.02 2.10 16 39 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 40 H 0.09 2.68 6.85 -2.39 -0.02 2.66 16 41 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 42 H 0.09 3.04 8.00 -2.39 -0.02 3.02 16 43 H 0.01 0.76 7.30 -2.39 -0.02 0.74 16 44 H 0.01 0.35 7.60 -2.39 -0.02 0.33 16 45 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 46 H 0.02 0.67 7.82 -2.38 -0.02 0.65 16 47 H 0.04 1.60 6.13 -2.39 -0.01 1.59 16 Total: -1.00 -77.20 372.91 3.90 -73.30 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 0.98 Total: 9.48 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: 5.41 Total: 15.04 kcal Atomic # 7 Polarization: -104.49 SS G_CDS: -4.55 Total: -109.04 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -1.52 Total: -31.71 kcal Atomic # 9 Polarization: -7.25 SS G_CDS: 1.56 Total: -5.69 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -77.20 3.90 -73.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071151005.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.292 kcal (2) G-P(sol) polarization free energy of solvation -77.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds