Wall clock time and date at job start Wed Apr 1 2020 03:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.51157 * 2 1 4 4 C 1.53278 * 109.51325 * 120.09951 * 2 1 3 5 5 N 1.47171 * 108.54903 * 172.95831 * 4 2 1 6 6 C 1.34777 * 121.07575 * 128.76330 * 5 4 2 7 7 O 1.21279 * 120.00093 * 179.97438 * 6 5 4 8 8 C 1.50707 * 120.00041 * 359.97438 * 6 5 4 9 9 C 1.53780 * 113.61573 * 277.49973 * 8 6 5 10 10 C 1.53777 * 87.08199 * 220.01984 * 9 8 6 11 11 F 1.39902 * 113.61272 * 270.88518 * 10 9 8 12 12 F 1.39895 * 113.69484 * 139.98873 * 10 9 8 13 13 C 1.53781 * 113.61515 * 179.97438 * 8 6 5 14 14 C 1.47323 * 117.84447 * 308.73910 * 5 4 2 15 15 C 1.52363 * 108.43480 * 49.15461 * 14 5 4 16 16 C 1.54362 * 110.39786 * 73.53042 * 15 14 5 17 17 C 1.54476 * 102.95490 * 152.19849 * 16 15 14 18 18 N 1.47080 * 107.28751 * 338.84197 * 17 16 15 19 19 C 1.36931 * 125.63332 * 178.90970 * 18 17 16 20 20 H 1.08000 * 120.00863 * 186.32531 * 19 18 17 21 21 C 1.38817 * 119.99804 * 6.33124 * 19 18 17 22 22 N 1.31624 * 119.99793 * 7.37786 * 21 19 18 23 23 Si 1.86795 * 120.00186 * 187.10684 * 21 19 18 24 24 H 1.48501 * 109.46906 * 265.29084 * 23 21 19 25 25 H 1.48500 * 109.47382 * 25.28695 * 23 21 19 26 26 H 1.48501 * 109.47548 * 145.29354 * 23 21 19 27 27 C 1.47578 * 108.73791 * 358.64189 * 18 17 16 28 28 O 1.41882 * 111.46829 * 310.02254 * 15 14 5 29 29 H 1.09001 * 109.47447 * 299.90036 * 1 2 3 30 30 H 1.09003 * 109.47150 * 59.89924 * 1 2 3 31 31 H 1.09004 * 109.47431 * 179.89679 * 1 2 3 32 32 H 1.09001 * 109.61770 * 53.24308 * 4 2 1 33 33 H 1.08991 * 109.78057 * 292.77463 * 4 2 1 34 34 H 1.09004 * 112.85022 * 48.80071 * 8 6 5 35 35 H 1.09002 * 113.61233 * 334.56519 * 9 8 6 36 36 H 1.08999 * 113.61835 * 105.46823 * 9 8 6 37 37 H 1.08998 * 113.61188 * 254.53194 * 13 8 6 38 38 H 1.09000 * 113.61358 * 25.43380 * 13 8 6 39 39 H 1.08996 * 109.64763 * 289.46530 * 14 5 4 40 40 H 1.09005 * 109.64176 * 168.83388 * 14 5 4 41 41 H 1.08999 * 110.73534 * 270.74446 * 16 15 14 42 42 H 1.09001 * 110.73529 * 33.86800 * 16 15 14 43 43 H 1.08996 * 109.98681 * 219.35402 * 17 16 15 44 44 H 1.09000 * 109.77022 * 98.20158 * 17 16 15 45 45 H 0.97002 * 120.00025 * 179.72821 * 22 21 19 46 46 H 1.09003 * 110.37343 * 142.37709 * 27 18 17 47 47 H 1.08993 * 110.37863 * 264.60747 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0419 -0.7245 1.2499 5 7 3.5035 -0.8619 1.1458 6 6 4.3122 -0.4732 2.1515 7 8 5.5141 -0.5957 2.0450 8 6 3.7230 0.1137 3.4083 9 6 3.3940 1.6115 3.2934 10 6 3.9257 1.7581 4.7288 11 9 2.9475 1.5689 5.7109 12 9 4.6829 2.9167 4.9322 13 6 4.7764 0.5054 4.4579 14 6 4.0539 -1.4385 -0.0932 15 6 3.4215 -0.7226 -1.2802 16 6 4.0037 0.6999 -1.4231 17 6 3.8631 0.9813 -2.9355 18 7 3.7494 -0.3190 -3.6133 19 6 3.5874 -0.5051 -4.9602 20 1 3.4117 -1.4964 -5.3513 21 6 3.6491 0.5804 -5.8232 22 7 4.0062 1.7630 -5.3687 23 14 3.2328 0.3614 -7.6310 24 1 4.4801 0.1224 -8.4007 25 1 2.3216 -0.8001 -7.7919 26 1 2.5659 1.5877 -8.1376 27 6 3.8454 -1.3904 -2.6029 28 8 2.0080 -0.6776 -1.1665 29 1 -0.3634 0.5123 0.8909 30 1 -0.3633 0.5154 -0.8891 31 1 -0.3634 -1.0277 -0.0019 32 1 1.5850 -1.7121 1.3134 33 1 1.7909 -0.1473 2.1397 34 1 2.9060 -0.4844 3.8121 35 1 3.9949 2.1347 2.5496 36 1 2.3279 1.8184 3.1994 37 1 4.8260 -0.1803 5.3037 38 1 5.7555 0.7261 4.0326 39 1 3.8186 -2.5017 -0.1387 40 1 5.1347 -1.2981 -0.1141 41 1 3.4236 1.4147 -0.8396 42 1 5.0516 0.7198 -1.1237 43 1 4.7423 1.5132 -3.2988 44 1 2.9669 1.5742 -3.1184 45 1 4.0531 2.5207 -5.9725 46 1 3.1671 -2.2070 -2.8501 47 1 4.8697 -1.7565 -2.5341 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071151007.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:45 Heat of formation + Delta-G solvation = -115.432114 kcal Electronic energy + Delta-G solvation = -32264.408536 eV Core-core repulsion = 27699.064104 eV Total energy + Delta-G solvation = -4565.344432 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.16442 -47.48558 -40.95683 -39.37696 -37.12225 -36.43898 -34.74356 -33.12997 -31.39325 -29.55210 -28.75567 -26.94026 -26.74348 -26.57473 -25.03399 -23.56424 -21.98662 -21.19214 -20.23714 -19.72120 -18.97928 -18.19344 -17.18275 -17.06409 -17.05004 -16.65358 -16.44156 -15.74962 -15.57273 -14.87553 -14.63122 -14.58703 -14.35190 -14.26686 -13.98132 -13.77350 -13.58362 -13.46317 -13.11168 -13.03236 -12.60481 -12.39479 -12.33486 -12.22342 -12.02977 -11.91753 -11.84246 -11.78252 -11.64203 -11.06235 -10.96540 -10.87295 -10.83076 -10.44507 -10.30083 -10.14736 -10.08794 -9.88195 -9.66906 -9.57958 -8.60129 -8.48130 -6.81045 -5.68860 -3.03936 2.29934 2.63587 3.04782 3.35816 3.41425 3.46810 3.49060 3.77074 3.81227 3.87168 3.92906 4.39859 4.49962 4.58908 4.75410 4.79895 4.95514 4.96495 5.02411 5.04816 5.10470 5.14230 5.27531 5.29715 5.40816 5.45961 5.52601 5.53685 5.67276 5.72350 5.75999 5.85065 5.92287 6.07123 6.11621 6.24776 6.42512 6.45327 6.51938 6.61018 7.16564 7.48669 7.61701 7.65965 7.82100 7.91697 8.26570 9.21977 9.82764 10.48343 11.41662 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018919 B = 0.002835 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.649087 B = 9875.326837 C =10087.034949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.069 3.931 3 H 0.066 0.934 4 C 0.077 3.923 5 N -0.606 5.606 6 C 0.530 3.470 7 O -0.532 6.532 8 C -0.134 4.134 9 C -0.150 4.150 10 C 0.256 3.744 11 F -0.179 7.179 12 F -0.186 7.186 13 C -0.141 4.141 14 C 0.097 3.903 15 C 0.093 3.907 16 C -0.164 4.164 17 C 0.181 3.819 18 N -0.598 5.598 19 C -0.225 4.225 20 H 0.078 0.922 21 C -0.008 4.008 22 N -0.920 5.920 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.281 1.281 26 H -0.291 1.291 27 C 0.152 3.848 28 O -0.343 6.343 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.127 0.873 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.030 0.970 45 H 0.251 0.749 46 H 0.051 0.949 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.853 -2.887 21.570 22.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.010 3.990 3 H 0.084 0.916 4 C -0.047 4.047 5 N -0.339 5.339 6 C 0.318 3.682 7 O -0.409 6.409 8 C -0.155 4.155 9 C -0.189 4.189 10 C 0.220 3.780 11 F -0.160 7.160 12 F -0.167 7.167 13 C -0.179 4.179 14 C -0.026 4.026 15 C 0.052 3.948 16 C -0.202 4.202 17 C 0.056 3.944 18 N -0.324 5.324 19 C -0.353 4.353 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.217 1.217 25 H -0.206 1.206 26 H -0.217 1.217 27 C 0.026 3.974 28 O -0.262 6.262 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.144 0.856 35 H 0.138 0.862 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.145 0.855 39 H 0.093 0.907 40 H 0.121 0.879 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.049 0.951 45 H 0.062 0.938 46 H 0.069 0.931 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.336 -2.877 21.203 21.832 hybrid contribution -0.274 0.236 -0.557 0.664 sum -4.610 -2.642 20.645 21.318 Atomic orbital electron populations 1.21700 0.92384 1.03078 1.02794 1.22439 0.95389 0.96044 0.85153 0.91650 1.22579 0.79983 1.02207 0.99883 1.48153 1.06838 1.62078 1.16832 1.19986 0.86602 0.77781 0.83861 1.90721 1.14386 1.55112 1.80653 1.22551 1.00675 0.96939 0.95322 1.24078 1.04980 0.94823 0.94972 1.21960 0.84537 0.84281 0.87229 1.93027 1.63086 1.95108 1.64731 1.93034 1.75830 1.51839 1.95969 1.24009 1.00118 0.94542 0.99253 1.22202 1.00673 0.97439 0.82255 1.22393 0.80992 0.96531 0.94922 1.23344 1.00024 0.95629 1.01237 1.21148 1.00841 0.87930 0.84447 1.44407 1.85821 0.99967 1.02183 1.19033 1.41784 0.94069 0.80458 0.90437 1.24796 1.01776 0.95781 0.98105 1.69959 1.53162 0.99898 1.33771 0.86105 0.77917 0.76931 0.84834 1.21679 1.20633 1.21704 1.21327 0.97546 0.92598 0.85969 1.87930 1.20195 1.76487 1.41560 0.91262 0.90996 0.91683 0.90278 0.89241 0.85607 0.86188 0.87851 0.88221 0.85466 0.90744 0.87860 0.92147 0.91563 0.92238 0.95146 0.93828 0.93097 0.94577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.57 37.16 0.36 -1.04 16 2 C 0.07 0.84 3.20 -26.59 -0.08 0.75 16 3 H 0.07 0.84 6.24 -51.92 -0.32 0.52 16 4 C 0.08 0.73 5.77 -3.53 -0.02 0.71 16 5 N -0.61 -7.24 2.95 -172.70 -0.51 -7.75 16 6 C 0.53 6.33 7.24 -10.98 -0.08 6.25 16 7 O -0.53 -8.24 15.39 5.56 0.09 -8.15 16 8 C -0.13 -1.09 2.71 -90.96 -0.25 -1.33 16 9 C -0.15 -1.15 6.99 -25.92 -0.18 -1.33 16 10 C 0.26 2.23 3.27 -25.90 -0.08 2.14 16 11 F -0.18 -1.64 17.38 2.25 0.04 -1.60 16 12 F -0.19 -1.98 17.41 2.25 0.04 -1.95 16 13 C -0.14 -1.16 7.20 -25.90 -0.19 -1.34 16 14 C 0.10 1.38 5.30 -3.92 -0.02 1.36 16 15 C 0.09 1.60 0.84 -89.65 -0.08 1.53 16 16 C -0.16 -3.08 5.87 -25.24 -0.15 -3.23 16 17 C 0.18 4.43 5.44 -2.95 -0.02 4.41 16 18 N -0.60 -15.31 3.40 -170.31 -0.58 -15.89 16 19 C -0.23 -6.30 10.26 -15.06 -0.15 -6.46 16 20 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 21 C -0.01 -0.24 5.45 -17.43 -0.09 -0.33 16 22 N -0.92 -27.18 10.47 55.49 0.58 -26.60 16 23 Si 0.91 22.21 29.56 -169.99 -5.02 17.18 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 C 0.15 3.13 6.41 -2.87 -0.02 3.11 16 28 O -0.34 -5.82 9.92 -35.22 -0.35 -6.17 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.58 5.56 -51.93 -0.29 0.30 16 34 H 0.13 0.74 7.54 -51.93 -0.39 0.35 16 35 H 0.12 1.02 8.09 -51.93 -0.42 0.60 16 36 H 0.10 0.60 7.94 -51.93 -0.41 0.18 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.13 1.20 7.43 -51.93 -0.39 0.82 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.10 1.60 6.86 -51.93 -0.36 1.24 16 41 H 0.06 1.05 6.09 -51.93 -0.32 0.73 16 42 H 0.07 1.23 7.82 -51.93 -0.41 0.83 16 43 H 0.06 1.63 6.99 -51.93 -0.36 1.27 16 44 H 0.03 0.82 7.92 -51.93 -0.41 0.41 16 45 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.04 0.72 8.00 -51.93 -0.42 0.30 16 LS Contribution 372.95 15.07 5.62 5.62 Total: -1.00 -33.17 372.95 -8.15 -41.32 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -7.00 Total: -1.20 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -1.06 Total: 5.19 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: -0.51 Total: -50.24 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.26 Total: -14.33 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.08 Total: -3.55 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.17 -8.15 -41.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071151007.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.114 kcal (2) G-P(sol) polarization free energy of solvation -33.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds