Wall clock time and date at job start Wed Apr 1 2020 03:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.51157 * 2 1 4 4 C 1.53278 * 109.51325 * 120.09951 * 2 1 3 5 5 N 1.47171 * 108.54903 * 172.95831 * 4 2 1 6 6 C 1.34777 * 121.07575 * 128.76330 * 5 4 2 7 7 O 1.21279 * 120.00093 * 179.97438 * 6 5 4 8 8 C 1.50707 * 120.00041 * 359.97438 * 6 5 4 9 9 C 1.53780 * 113.61573 * 277.49973 * 8 6 5 10 10 C 1.53777 * 87.08199 * 220.01984 * 9 8 6 11 11 F 1.39902 * 113.61272 * 270.88518 * 10 9 8 12 12 F 1.39895 * 113.69484 * 139.98873 * 10 9 8 13 13 C 1.53781 * 113.61515 * 179.97438 * 8 6 5 14 14 C 1.47323 * 117.84447 * 308.73910 * 5 4 2 15 15 C 1.52363 * 108.43480 * 49.15461 * 14 5 4 16 16 C 1.54362 * 110.39786 * 73.53042 * 15 14 5 17 17 C 1.54476 * 102.95490 * 152.19849 * 16 15 14 18 18 N 1.47080 * 107.28751 * 338.84197 * 17 16 15 19 19 C 1.36931 * 125.63332 * 178.90970 * 18 17 16 20 20 H 1.08000 * 120.00863 * 186.32531 * 19 18 17 21 21 C 1.38817 * 119.99804 * 6.33124 * 19 18 17 22 22 N 1.31624 * 119.99793 * 7.37786 * 21 19 18 23 23 Si 1.86795 * 120.00186 * 187.10684 * 21 19 18 24 24 H 1.48501 * 109.46906 * 265.29084 * 23 21 19 25 25 H 1.48500 * 109.47382 * 25.28695 * 23 21 19 26 26 H 1.48501 * 109.47548 * 145.29354 * 23 21 19 27 27 C 1.47578 * 108.73791 * 358.64189 * 18 17 16 28 28 O 1.41882 * 111.46829 * 310.02254 * 15 14 5 29 29 H 1.09001 * 109.47447 * 299.90036 * 1 2 3 30 30 H 1.09003 * 109.47150 * 59.89924 * 1 2 3 31 31 H 1.09004 * 109.47431 * 179.89679 * 1 2 3 32 32 H 1.09001 * 109.61770 * 53.24308 * 4 2 1 33 33 H 1.08991 * 109.78057 * 292.77463 * 4 2 1 34 34 H 1.09004 * 112.85022 * 48.80071 * 8 6 5 35 35 H 1.09002 * 113.61233 * 334.56519 * 9 8 6 36 36 H 1.08999 * 113.61835 * 105.46823 * 9 8 6 37 37 H 1.08998 * 113.61188 * 254.53194 * 13 8 6 38 38 H 1.09000 * 113.61358 * 25.43380 * 13 8 6 39 39 H 1.08996 * 109.64763 * 289.46530 * 14 5 4 40 40 H 1.09005 * 109.64176 * 168.83388 * 14 5 4 41 41 H 1.08999 * 110.73534 * 270.74446 * 16 15 14 42 42 H 1.09001 * 110.73529 * 33.86800 * 16 15 14 43 43 H 1.08996 * 109.98681 * 219.35402 * 17 16 15 44 44 H 1.09000 * 109.77022 * 98.20158 * 17 16 15 45 45 H 0.97002 * 120.00025 * 179.72821 * 22 21 19 46 46 H 1.09003 * 110.37343 * 142.37709 * 27 18 17 47 47 H 1.08993 * 110.37863 * 264.60747 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0419 -0.7245 1.2499 5 7 3.5035 -0.8619 1.1458 6 6 4.3122 -0.4732 2.1515 7 8 5.5141 -0.5957 2.0450 8 6 3.7230 0.1137 3.4083 9 6 3.3940 1.6115 3.2934 10 6 3.9257 1.7581 4.7288 11 9 2.9475 1.5689 5.7109 12 9 4.6829 2.9167 4.9322 13 6 4.7764 0.5054 4.4579 14 6 4.0539 -1.4385 -0.0932 15 6 3.4215 -0.7226 -1.2802 16 6 4.0037 0.6999 -1.4231 17 6 3.8631 0.9813 -2.9355 18 7 3.7494 -0.3190 -3.6133 19 6 3.5874 -0.5051 -4.9602 20 1 3.4117 -1.4964 -5.3513 21 6 3.6491 0.5804 -5.8232 22 7 4.0062 1.7630 -5.3687 23 14 3.2328 0.3614 -7.6310 24 1 4.4801 0.1224 -8.4007 25 1 2.3216 -0.8001 -7.7919 26 1 2.5659 1.5877 -8.1376 27 6 3.8454 -1.3904 -2.6029 28 8 2.0080 -0.6776 -1.1665 29 1 -0.3634 0.5123 0.8909 30 1 -0.3633 0.5154 -0.8891 31 1 -0.3634 -1.0277 -0.0019 32 1 1.5850 -1.7121 1.3134 33 1 1.7909 -0.1473 2.1397 34 1 2.9060 -0.4844 3.8121 35 1 3.9949 2.1347 2.5496 36 1 2.3279 1.8184 3.1994 37 1 4.8260 -0.1803 5.3037 38 1 5.7555 0.7261 4.0326 39 1 3.8186 -2.5017 -0.1387 40 1 5.1347 -1.2981 -0.1141 41 1 3.4236 1.4147 -0.8396 42 1 5.0516 0.7198 -1.1237 43 1 4.7423 1.5132 -3.2988 44 1 2.9669 1.5742 -3.1184 45 1 4.0531 2.5207 -5.9725 46 1 3.1671 -2.2070 -2.8501 47 1 4.8697 -1.7565 -2.5341 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071151007.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:44 Heat of formation + Delta-G solvation = -136.590767 kcal Electronic energy + Delta-G solvation = -32265.326044 eV Core-core repulsion = 27699.064104 eV Total energy + Delta-G solvation = -4566.261940 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.85801 -48.19834 -41.98784 -40.49473 -38.03543 -37.85347 -35.83310 -34.76328 -32.92747 -31.15524 -30.23763 -28.17955 -27.50498 -27.29350 -26.54192 -25.01986 -23.13666 -22.08654 -21.95180 -20.79356 -19.98718 -19.01537 -18.95744 -18.03453 -17.86269 -17.67838 -17.25949 -16.80731 -16.66685 -16.46929 -16.01870 -15.61677 -15.60725 -15.20716 -15.06186 -15.00689 -14.77474 -14.47800 -14.16422 -14.04795 -13.80645 -13.71715 -13.58507 -13.13767 -13.09508 -12.98232 -12.95762 -12.80414 -12.72964 -12.52895 -12.45010 -12.22722 -12.11027 -12.02598 -11.85517 -11.70147 -11.49004 -11.47133 -10.93010 -10.81675 -10.72886 -9.55487 -8.90713 -7.84681 -5.22322 1.41625 1.45407 1.47296 1.56872 1.72871 2.40127 2.48800 2.63098 2.72481 3.14568 3.20884 3.25202 3.32601 3.45534 3.58437 3.70698 3.84385 3.93603 3.93734 4.08807 4.18147 4.25662 4.34344 4.38700 4.43344 4.44784 4.48393 4.61408 4.63120 4.70338 4.75410 4.76165 4.79230 4.86078 4.95804 5.03740 5.06917 5.13111 5.25304 5.36702 5.41090 5.57551 5.69776 6.17390 6.27166 6.41265 7.00769 7.07516 7.74633 8.39628 9.24634 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018919 B = 0.002835 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.649087 B = 9875.326837 C =10087.034949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.058 3.942 3 H 0.056 0.944 4 C 0.081 3.919 5 N -0.607 5.607 6 C 0.529 3.471 7 O -0.573 6.573 8 C -0.123 4.123 9 C -0.146 4.146 10 C 0.254 3.746 11 F -0.179 7.179 12 F -0.201 7.201 13 C -0.142 4.142 14 C 0.106 3.894 15 C 0.112 3.888 16 C -0.148 4.148 17 C 0.192 3.808 18 N -0.620 5.620 19 C -0.240 4.240 20 H 0.083 0.917 21 C -0.068 4.068 22 N -0.951 5.951 23 Si 0.980 3.020 24 H -0.286 1.286 25 H -0.267 1.267 26 H -0.294 1.294 27 C 0.144 3.856 28 O -0.371 6.371 29 H 0.108 0.892 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.129 0.871 34 H 0.162 0.838 35 H 0.108 0.892 36 H 0.131 0.869 37 H 0.116 0.884 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.020 0.980 44 H -0.007 1.007 45 H 0.246 0.754 46 H 0.053 0.947 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.759 -4.189 23.868 25.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.000 4.000 3 H 0.074 0.926 4 C -0.041 4.041 5 N -0.339 5.339 6 C 0.318 3.682 7 O -0.453 6.453 8 C -0.144 4.144 9 C -0.184 4.184 10 C 0.218 3.782 11 F -0.159 7.159 12 F -0.182 7.182 13 C -0.180 4.180 14 C -0.018 4.018 15 C 0.070 3.930 16 C -0.186 4.186 17 C 0.067 3.933 18 N -0.346 5.346 19 C -0.369 4.369 20 H 0.101 0.899 21 C -0.260 4.260 22 N -0.600 5.600 23 Si 0.808 3.192 24 H -0.213 1.213 25 H -0.192 1.192 26 H -0.221 1.221 27 C 0.019 3.981 28 O -0.290 6.290 29 H 0.126 0.874 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.147 0.853 34 H 0.180 0.820 35 H 0.126 0.874 36 H 0.149 0.851 37 H 0.135 0.865 38 H 0.128 0.872 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.038 0.962 44 H 0.011 0.989 45 H 0.055 0.945 46 H 0.071 0.929 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.269 -4.208 23.536 24.717 hybrid contribution 0.309 0.642 -1.249 1.438 sum -5.959 -3.566 22.287 23.344 Atomic orbital electron populations 1.21728 0.90426 1.03747 1.03516 1.22793 0.96911 0.95502 0.84815 0.92635 1.22751 0.78065 1.03563 0.99704 1.48218 1.08068 1.61728 1.15839 1.20626 0.86061 0.76848 0.84656 1.90713 1.16380 1.56644 1.81527 1.22631 1.01325 0.97308 0.93093 1.24091 1.06489 0.94120 0.93727 1.22067 0.84611 0.83816 0.87729 1.93027 1.62990 1.95052 1.64870 1.93006 1.76356 1.52779 1.96091 1.23998 0.99396 0.94753 0.99878 1.21889 0.99590 0.97982 0.82296 1.22021 0.81840 0.94633 0.94502 1.23145 1.00657 0.97736 0.97055 1.20822 0.97191 0.87205 0.88081 1.44700 1.85680 1.01653 1.02537 1.19452 1.41031 0.94375 0.82010 0.89890 1.25677 1.02258 0.95597 1.02499 1.70192 1.54457 1.00503 1.34887 0.85046 0.77731 0.76917 0.79541 1.21273 1.19213 1.22092 1.21532 0.98135 0.91741 0.86727 1.87888 1.19429 1.77229 1.44495 0.87383 0.93444 0.91009 0.88466 0.85272 0.82023 0.87390 0.85064 0.86520 0.87226 0.89123 0.89288 0.90478 0.91447 0.96177 0.98874 0.94482 0.92871 0.93758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.57 71.98 0.69 -1.58 16 2 C 0.06 1.25 3.20 30.69 0.10 1.35 16 3 H 0.06 1.31 6.24 -2.38 -0.01 1.30 16 4 C 0.08 1.17 5.77 86.34 0.50 1.67 16 5 N -0.61 -12.69 2.95 -818.68 -2.42 -15.11 16 6 C 0.53 11.25 7.24 87.66 0.63 11.89 16 7 O -0.57 -17.18 15.39 -3.03 -0.05 -17.23 16 8 C -0.12 -1.53 2.71 -11.01 -0.03 -1.56 16 9 C -0.15 -1.74 6.99 31.12 0.22 -1.53 16 10 C 0.25 3.76 3.27 31.13 0.10 3.86 16 11 F -0.18 -2.68 17.38 44.97 0.78 -1.90 16 12 F -0.20 -4.05 17.41 44.97 0.78 -3.27 16 13 C -0.14 -1.99 7.20 31.13 0.22 -1.77 16 14 C 0.11 2.86 5.30 86.01 0.46 3.32 16 15 C 0.11 3.78 0.84 -10.17 -0.01 3.77 16 16 C -0.15 -5.65 5.87 31.56 0.19 -5.46 16 17 C 0.19 9.89 5.44 86.77 0.47 10.36 16 18 N -0.62 -32.81 3.40 -692.73 -2.36 -35.17 16 19 C -0.24 -13.77 10.26 84.04 0.86 -12.91 16 20 H 0.08 4.53 7.84 -2.91 -0.02 4.51 16 21 C -0.07 -3.93 5.45 84.86 0.46 -3.47 16 22 N -0.95 -58.71 10.47 21.65 0.23 -58.48 16 23 Si 0.98 46.63 29.56 68.60 2.03 48.66 16 24 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 27 C 0.14 5.97 6.41 86.55 0.56 6.53 16 28 O -0.37 -12.17 9.92 -148.95 -1.48 -13.65 16 29 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.13 0.87 5.56 -2.39 -0.01 0.86 16 34 H 0.16 0.92 7.54 -2.39 -0.02 0.90 16 35 H 0.11 1.62 8.09 -2.39 -0.02 1.60 16 36 H 0.13 0.85 7.94 -2.39 -0.02 0.83 16 37 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.11 1.99 7.43 -2.39 -0.02 1.97 16 39 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.09 2.70 6.86 -2.38 -0.02 2.68 16 41 H 0.08 2.67 6.09 -2.39 -0.01 2.65 16 42 H 0.07 2.56 7.82 -2.39 -0.02 2.54 16 43 H 0.02 1.18 6.99 -2.39 -0.02 1.16 16 44 H -0.01 -0.40 7.92 -2.39 -0.02 -0.42 16 45 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 46 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.04 1.77 8.00 -2.39 -0.02 1.75 16 Total: -1.00 -76.93 372.95 3.93 -73.01 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 0.98 Total: 8.66 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 5.42 Total: 14.48 kcal Atomic # 7 Polarization: -104.22 SS G_CDS: -4.54 Total: -108.76 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -1.52 Total: -30.87 kcal Atomic # 9 Polarization: -6.74 SS G_CDS: 1.56 Total: -5.17 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -76.93 3.93 -73.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071151007.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.584 kcal (2) G-P(sol) polarization free energy of solvation -76.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds