Wall clock time and date at job start Wed Apr 1 2020 03:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.51421 * 2 1 4 4 C 1.53286 * 109.51039 * 239.85197 * 2 1 3 5 5 N 1.47170 * 108.49236 * 187.08643 * 4 2 1 6 6 C 1.34775 * 121.06110 * 231.23177 * 5 4 2 7 7 O 1.21279 * 119.99920 * 4.36707 * 6 5 4 8 8 C 1.50697 * 120.00283 * 184.36623 * 6 5 4 9 9 C 1.53007 * 115.54798 * 65.55364 * 8 6 5 10 10 F 1.39895 * 109.47300 * 54.55702 * 9 8 6 11 11 F 1.39901 * 109.46985 * 174.55991 * 9 8 6 12 12 C 1.52997 * 117.50097 * 279.88618 * 8 6 5 13 13 C 1.53001 * 117.50360 * 211.22446 * 8 6 5 14 14 C 1.47293 * 117.87789 * 51.21002 * 5 4 2 15 15 C 1.52514 * 108.46387 * 310.65738 * 14 5 4 16 16 C 1.54523 * 110.03888 * 172.72212 * 15 14 5 17 17 C 1.55025 * 101.52930 * 153.07191 * 16 15 14 18 18 N 1.47478 * 104.89910 * 323.61645 * 17 16 15 19 19 C 1.36937 * 125.66640 * 203.75893 * 18 17 16 20 20 H 1.08000 * 120.00177 * 160.59073 * 19 18 17 21 21 C 1.38806 * 119.99675 * 340.58690 * 19 18 17 22 22 N 1.31627 * 120.00057 * 160.33958 * 21 19 18 23 23 Si 1.86793 * 120.00533 * 340.34143 * 21 19 18 24 24 H 1.48503 * 109.47326 * 88.85385 * 23 21 19 25 25 H 1.48499 * 109.47774 * 208.85885 * 23 21 19 26 26 H 1.48503 * 109.46934 * 328.85838 * 23 21 19 27 27 C 1.47188 * 108.67037 * 24.02602 * 18 17 16 28 28 O 1.42054 * 111.14234 * 50.20563 * 15 14 5 29 29 H 1.09005 * 109.46814 * 299.90012 * 1 2 3 30 30 H 1.08993 * 109.47289 * 59.90003 * 1 2 3 31 31 H 1.09000 * 109.46892 * 179.90140 * 1 2 3 32 32 H 1.09005 * 109.63525 * 306.78775 * 4 2 1 33 33 H 1.08999 * 109.63502 * 67.38332 * 4 2 1 34 34 H 1.09003 * 109.47013 * 294.55284 * 9 8 6 35 35 H 1.09003 * 117.49956 * 359.97438 * 12 8 6 36 36 H 1.08999 * 117.50436 * 145.01852 * 12 8 6 37 37 H 1.08998 * 117.50083 * 214.98362 * 13 8 6 38 38 H 1.08999 * 117.49447 * 359.97438 * 13 8 6 39 39 H 1.09007 * 109.63760 * 190.96509 * 14 5 4 40 40 H 1.08996 * 109.63914 * 70.35561 * 14 5 4 41 41 H 1.09008 * 111.01443 * 35.01040 * 16 15 14 42 42 H 1.08993 * 111.01365 * 271.13258 * 16 15 14 43 43 H 1.08998 * 110.35073 * 204.76302 * 17 16 15 44 44 H 1.08994 * 110.44403 * 82.52153 * 17 16 15 45 45 H 0.96995 * 120.00195 * 179.97438 * 22 21 19 46 46 H 1.09000 * 109.91262 * 117.85619 * 27 18 17 47 47 H 1.09000 * 109.90922 * 239.11356 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7257 -1.2494 5 7 3.5034 -0.8632 -1.1434 6 6 4.3131 -0.4754 -2.1486 7 8 3.8469 0.0681 -3.1275 8 6 5.7977 -0.7170 -2.0563 9 6 6.2285 -2.1851 -2.0548 10 9 5.6974 -2.8282 -3.1780 11 9 7.6249 -2.2614 -2.0906 12 6 6.6220 0.2619 -1.2178 13 6 6.7215 0.2896 -2.7450 14 6 4.0529 -1.4378 0.0965 15 6 3.4231 -0.7166 1.2837 16 6 3.8334 -1.4095 2.6025 17 6 3.7403 -0.2358 3.6111 18 7 4.2018 0.9468 2.8604 19 6 4.7243 2.0872 3.4096 20 1 5.3138 2.7580 2.8022 21 6 4.4962 2.3809 4.7469 22 7 5.2806 3.2294 5.3774 23 14 3.0763 1.5723 5.6519 24 1 3.5330 0.2890 6.2435 25 1 2.6001 2.4735 6.7319 26 1 1.9669 1.3114 4.6999 27 6 4.0015 0.7002 1.4232 28 8 2.0080 -0.6764 1.1667 29 1 -0.3633 0.5123 0.8909 30 1 -0.3633 0.5153 -0.8890 31 1 -0.3633 -1.0277 -0.0018 32 1 1.5848 -1.7132 -1.3126 33 1 1.7922 -0.1458 -2.1379 34 1 5.8612 -2.6706 -1.1506 35 1 6.0905 1.0810 -0.7332 36 1 7.4714 -0.1398 -0.6654 37 1 7.6363 -0.0941 -3.1968 38 1 6.2553 1.1263 -3.2653 39 1 5.1341 -1.3005 0.1161 40 1 3.8147 -2.5003 0.1449 41 1 4.8519 -1.7931 2.5421 42 1 3.1330 -2.2035 2.8611 43 1 4.3901 -0.4190 4.4668 44 1 2.7106 -0.0977 3.9405 45 1 5.1210 3.4349 6.3118 46 1 3.3008 1.4289 1.0157 47 1 4.9550 0.7652 0.8991 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071169454.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:14 Heat of formation + Delta-G solvation = -130.491318 kcal Electronic energy + Delta-G solvation = -33250.954926 eV Core-core repulsion = 28684.957477 eV Total energy + Delta-G solvation = -4565.997448 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.09429 -48.10134 -42.12368 -40.51082 -38.28070 -37.57151 -36.03239 -34.86711 -33.39250 -31.31588 -30.14785 -29.16718 -27.88137 -27.44695 -25.34695 -23.93031 -23.76408 -23.04610 -22.49130 -20.78302 -20.18965 -19.15853 -18.82135 -18.55054 -18.21133 -17.89587 -17.50319 -17.20460 -16.87426 -16.40043 -16.23862 -15.81710 -15.56422 -15.41281 -15.09433 -14.96922 -14.76010 -14.44988 -14.39832 -14.21520 -14.02594 -13.83716 -13.60920 -13.45812 -13.24931 -13.09287 -13.00714 -12.83620 -12.77211 -12.64866 -12.58725 -12.26319 -11.98949 -11.91411 -11.83191 -11.67859 -11.47750 -11.39562 -11.04282 -11.00661 -10.85965 -9.68923 -9.04613 -8.18643 -5.47460 1.17255 1.28338 1.39146 1.46855 1.54906 2.17377 2.39278 2.50298 2.68600 2.95562 3.06631 3.12264 3.18259 3.29385 3.51624 3.55535 3.62897 3.67329 3.82213 3.92296 3.97888 4.01835 4.11678 4.23200 4.33887 4.35104 4.45509 4.51666 4.53793 4.60849 4.62958 4.72566 4.76429 4.82278 4.89810 4.95145 4.97382 5.01346 5.02811 5.13935 5.19159 5.26575 5.65075 6.04872 6.08558 6.22612 6.73603 6.82076 7.51627 8.07395 9.01145 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012697 B = 0.004323 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.688907 B = 6475.880708 C = 7559.990841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.067 3.933 3 H 0.041 0.959 4 C 0.089 3.911 5 N -0.606 5.606 6 C 0.562 3.438 7 O -0.562 6.562 8 C -0.243 4.243 9 C 0.310 3.690 10 F -0.209 7.209 11 F -0.195 7.195 12 C -0.127 4.127 13 C -0.127 4.127 14 C 0.090 3.910 15 C 0.099 3.901 16 C -0.101 4.101 17 C 0.097 3.903 18 N -0.621 5.621 19 C -0.231 4.231 20 H 0.059 0.941 21 C -0.033 4.033 22 N -0.957 5.957 23 Si 0.946 3.054 24 H -0.267 1.267 25 H -0.312 1.312 26 H -0.271 1.271 27 C 0.115 3.885 28 O -0.367 6.367 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.152 0.848 35 H 0.097 0.903 36 H 0.137 0.863 37 H 0.128 0.872 38 H 0.100 0.900 39 H 0.112 0.888 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.109 0.891 43 H 0.049 0.951 44 H 0.021 0.979 45 H 0.262 0.738 46 H 0.012 0.988 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.535 -16.273 -14.426 21.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.009 3.991 3 H 0.059 0.941 4 C -0.033 4.033 5 N -0.338 5.338 6 C 0.350 3.650 7 O -0.441 6.441 8 C -0.247 4.247 9 C 0.256 3.744 10 F -0.190 7.190 11 F -0.176 7.176 12 C -0.164 4.164 13 C -0.164 4.164 14 C -0.033 4.033 15 C 0.058 3.942 16 C -0.139 4.139 17 C -0.027 4.027 18 N -0.348 5.348 19 C -0.360 4.360 20 H 0.077 0.923 21 C -0.228 4.228 22 N -0.604 5.604 23 Si 0.775 3.225 24 H -0.192 1.192 25 H -0.241 1.241 26 H -0.196 1.196 27 C -0.010 4.010 28 O -0.286 6.286 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.121 0.879 33 H 0.113 0.887 34 H 0.169 0.831 35 H 0.116 0.884 36 H 0.155 0.845 37 H 0.146 0.854 38 H 0.119 0.881 39 H 0.130 0.870 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.128 0.872 43 H 0.067 0.933 44 H 0.038 0.962 45 H 0.071 0.929 46 H 0.030 0.970 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.830 -15.947 -14.693 21.868 hybrid contribution -0.481 0.884 0.535 1.140 sum -3.311 -15.062 -14.158 20.935 Atomic orbital electron populations 1.21693 0.90248 1.04162 1.03171 1.22599 0.97014 0.94867 0.84610 0.94102 1.22427 0.78829 1.03038 0.98971 1.48177 1.07224 1.61966 1.16463 1.19266 0.86637 0.77206 0.81871 1.90679 1.76679 1.43664 1.33048 1.22501 0.91953 0.94634 1.15568 1.21288 0.75003 0.89351 0.88752 1.93001 1.86149 1.82992 1.56862 1.92996 1.30729 1.96768 1.97132 1.23287 1.00462 0.98033 0.94650 1.23147 0.99294 0.98338 0.95629 1.22616 1.00224 0.99487 0.80953 1.22186 0.81702 0.94142 0.96127 1.22742 1.04094 0.96542 0.90558 1.22162 0.96904 0.87450 0.96167 1.44862 1.73842 1.13944 1.02109 1.18550 1.23883 0.99279 0.94272 0.92324 1.25600 1.00759 0.98832 0.97585 1.69927 1.39291 1.40317 1.10870 0.85998 0.81597 0.77438 0.77430 1.19240 1.24087 1.19634 1.22022 0.97910 0.95505 0.85581 1.87848 1.19903 1.76936 1.43907 0.92626 0.89098 0.89953 0.87906 0.88737 0.83076 0.88420 0.84530 0.85399 0.88118 0.87036 0.86208 0.86516 0.87234 0.93318 0.96168 0.92881 0.96993 0.93314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.57 71.98 0.69 -1.94 16 2 C 0.07 1.67 3.17 30.69 0.10 1.77 16 3 H 0.04 1.26 6.25 -2.39 -0.01 1.24 16 4 C 0.09 1.90 5.92 86.35 0.51 2.42 16 5 N -0.61 -13.49 2.95 -818.46 -2.41 -15.90 16 6 C 0.56 14.42 6.79 87.66 0.59 15.02 16 7 O -0.56 -18.47 16.17 -3.03 -0.05 -18.52 16 8 C -0.24 -4.96 1.15 -52.93 -0.06 -5.02 16 9 C 0.31 5.20 5.06 71.98 0.36 5.56 16 10 F -0.21 -4.51 17.14 44.97 0.77 -3.74 16 11 F -0.20 -3.44 15.92 44.97 0.72 -2.72 16 12 C -0.13 -2.46 8.60 30.62 0.26 -2.20 16 13 C -0.13 -2.53 9.48 30.62 0.29 -2.24 16 14 C 0.09 1.66 4.05 86.07 0.35 2.01 16 15 C 0.10 2.66 0.81 -10.21 -0.01 2.65 16 16 C -0.10 -2.60 6.21 31.81 0.20 -2.40 16 17 C 0.10 3.83 4.71 86.89 0.41 4.24 16 18 N -0.62 -28.44 3.21 -692.51 -2.22 -30.66 16 19 C -0.23 -13.03 10.60 84.03 0.89 -12.13 16 20 H 0.06 3.60 8.06 -2.91 -0.02 3.57 16 21 C -0.03 -1.94 5.46 84.86 0.46 -1.47 16 22 N -0.96 -59.79 13.97 21.65 0.30 -59.49 16 23 Si 0.95 46.80 24.32 68.60 1.67 48.47 16 24 H -0.27 -12.20 6.73 99.48 0.67 -11.53 16 25 H -0.31 -15.74 7.11 99.48 0.71 -15.04 16 26 H -0.27 -13.24 6.17 99.48 0.61 -12.62 16 27 C 0.11 4.19 6.34 86.47 0.55 4.74 16 28 O -0.37 -10.38 9.89 -148.97 -1.47 -11.85 16 29 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.09 2.18 7.06 -2.39 -0.02 2.16 16 34 H 0.15 1.51 6.36 -2.39 -0.02 1.50 16 35 H 0.10 2.30 6.79 -2.39 -0.02 2.28 16 36 H 0.14 2.14 7.94 -2.39 -0.02 2.12 16 37 H 0.13 2.14 7.62 -2.39 -0.02 2.12 16 38 H 0.10 2.26 8.00 -2.39 -0.02 2.24 16 39 H 0.11 1.78 4.70 -2.38 -0.01 1.76 16 40 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.12 2.33 8.01 -2.38 -0.02 2.31 16 42 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.05 2.02 6.70 -2.39 -0.02 2.01 16 44 H 0.02 0.88 5.23 -2.39 -0.01 0.87 16 45 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 46 H 0.01 0.50 6.03 -2.39 -0.01 0.48 16 47 H 0.05 1.67 6.00 -2.39 -0.01 1.66 16 Total: -1.00 -75.92 363.40 3.77 -72.15 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 0.87 Total: 11.28 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 5.60 Total: 11.00 kcal Atomic # 7 Polarization: -101.72 SS G_CDS: -4.33 Total: -106.05 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -1.52 Total: -30.38 kcal Atomic # 9 Polarization: -7.95 SS G_CDS: 1.49 Total: -6.46 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.67 Total: 48.47 kcal Total: -75.92 3.77 -72.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071169454.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.343 kcal (2) G-P(sol) polarization free energy of solvation -75.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds