Wall clock time and date at job start Wed Apr 1 2020 02:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 F 1.39904 * 109.46732 * 2 1 4 4 F 1.39898 * 109.47129 * 240.00554 * 2 1 3 5 5 C 1.50693 * 109.47199 * 119.99816 * 2 1 3 6 6 O 1.21280 * 119.99844 * 25.00255 * 5 2 1 7 7 N 1.34778 * 120.00183 * 205.00182 * 5 2 1 8 8 C 1.47537 * 125.56056 * 0.02562 * 7 5 2 9 9 C 1.54094 * 104.76330 * 203.82731 * 8 7 5 10 10 C 1.52135 * 110.65276 * 205.79464 * 9 8 7 11 11 C 1.53322 * 109.47043 * 295.60308 * 10 9 8 12 12 N 1.46943 * 108.69107 * 306.67212 * 11 10 9 13 13 C 1.36945 * 120.56823 * 234.36011 * 12 11 10 14 14 H 1.08004 * 119.99561 * 152.44390 * 13 12 11 15 15 C 1.38811 * 120.00045 * 332.44276 * 13 12 11 16 16 N 1.31618 * 120.00224 * 159.32933 * 15 13 12 17 17 Si 1.86806 * 119.99880 * 339.32695 * 15 13 12 18 18 H 1.48497 * 109.46833 * 93.31470 * 17 15 13 19 19 H 1.48504 * 109.47099 * 213.31122 * 17 15 13 20 20 H 1.48500 * 109.47466 * 333.31365 * 17 15 13 21 21 C 1.46928 * 118.85868 * 54.37523 * 12 11 10 22 22 C 1.52130 * 110.66138 * 81.60802 * 9 8 7 23 23 C 1.54389 * 102.66427 * 323.68799 * 9 8 7 24 24 H 1.09004 * 113.33554 * 157.21907 * 23 9 8 25 25 C 1.53799 * 108.68371 * 285.01170 * 23 9 8 26 26 O 1.42783 * 108.45288 * 123.06710 * 25 23 9 27 27 C 1.42906 * 110.68214 * 1.92179 * 26 25 23 28 28 C 1.46748 * 125.56172 * 180.02562 * 7 5 2 29 29 H 1.08998 * 111.70981 * 55.41034 * 28 7 5 30 30 H 1.08994 * 109.47271 * 300.00285 * 1 2 3 31 31 H 1.09007 * 109.47285 * 59.99820 * 1 2 3 32 32 H 1.09002 * 109.47338 * 179.97438 * 1 2 3 33 33 H 1.08995 * 110.37755 * 85.00758 * 8 7 5 34 34 H 1.08995 * 110.38224 * 322.64976 * 8 7 5 35 35 H 1.09001 * 109.47139 * 175.60423 * 10 9 8 36 36 H 1.09002 * 109.47188 * 55.60181 * 10 9 8 37 37 H 1.09001 * 109.60156 * 66.42723 * 11 10 9 38 38 H 1.09000 * 109.60501 * 186.74781 * 11 10 9 39 39 H 0.96996 * 120.00498 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.59843 * 65.38872 * 21 12 11 41 41 H 1.08999 * 109.60141 * 185.70175 * 21 12 11 42 42 H 1.09005 * 109.47098 * 304.40175 * 22 9 8 43 43 H 1.08997 * 109.47565 * 184.39931 * 22 9 8 44 44 H 1.09004 * 109.68870 * 242.83937 * 25 23 9 45 45 H 1.08996 * 109.69053 * 3.29159 * 25 23 9 46 46 H 1.08999 * 109.89092 * 222.65322 * 27 26 25 47 47 H 1.09007 * 109.89092 * 101.45093 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9962 1.3191 0.0000 4 9 1.9963 -0.6594 -1.1423 5 6 2.0323 -0.7103 1.2304 6 8 1.3370 -1.5393 1.7784 7 7 3.2543 -0.4245 1.7219 8 6 4.1983 0.5582 1.1563 9 6 5.5851 0.0962 1.6440 10 6 6.5508 1.2701 1.7056 11 6 6.7810 1.8172 0.2919 12 7 7.1958 0.7095 -0.5799 13 6 8.3530 0.7917 -1.3076 14 1 8.8864 -0.1079 -1.5771 15 6 8.8402 2.0312 -1.6989 16 7 10.1083 2.1670 -2.0244 17 14 7.6962 3.5066 -1.7635 18 1 7.7640 4.2422 -0.4753 19 1 8.1108 4.4064 -2.8697 20 1 6.3045 3.0441 -1.9967 21 6 6.3474 -0.4876 -0.6578 22 6 6.1196 -1.0217 0.7613 23 6 5.2860 -0.4321 3.0635 24 1 6.0273 -1.1455 3.4238 25 6 5.0674 0.7681 4.0000 26 8 3.7782 0.6436 4.6009 27 6 3.1381 -0.5617 4.1771 28 6 3.8629 -1.0398 2.9070 29 1 3.8920 -2.1265 2.8271 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.9771 1.5570 1.5323 34 1 4.1546 0.5433 0.0673 35 1 7.5001 0.9380 2.1257 36 1 6.1296 2.0544 2.3346 37 1 5.8565 2.2537 -0.0863 38 1 7.5611 2.5780 0.3167 39 1 10.4487 3.0330 -2.2982 40 1 5.3897 -0.2283 -1.1091 41 1 6.8424 -1.2478 -1.2621 42 1 5.3973 -1.8375 0.7309 43 1 7.0627 -1.3865 1.1680 44 1 5.8344 0.7741 4.7745 45 1 5.1179 1.6944 3.4277 46 1 2.0892 -0.3660 3.9542 47 1 3.2189 -1.3186 4.9573 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079218582.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:55 Heat of formation + Delta-G solvation = -150.230050 kcal Electronic energy + Delta-G solvation = -33867.942941 eV Core-core repulsion = 29301.089557 eV Total energy + Delta-G solvation = -4566.853384 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.39298 -48.38383 -42.74007 -40.28965 -39.23877 -37.09842 -35.01734 -33.50560 -32.73669 -32.12698 -31.57326 -29.93310 -28.11339 -26.54755 -25.84983 -24.87669 -23.94157 -23.01368 -21.88741 -21.05293 -20.13280 -19.25036 -18.95754 -18.73981 -17.84308 -17.51725 -17.46954 -16.93674 -16.77904 -16.34143 -16.03117 -15.91383 -15.52270 -15.33264 -15.18862 -14.96832 -14.87868 -14.69292 -14.51284 -14.40303 -14.19341 -13.72067 -13.65570 -13.53670 -13.46712 -13.36207 -13.13472 -13.03359 -12.90964 -12.69336 -12.55487 -12.44449 -12.18854 -12.05116 -11.72859 -11.61269 -11.33743 -11.17589 -11.10363 -10.65766 -10.42286 -10.02801 -8.91370 -8.15389 -5.46677 0.82677 1.25954 1.28946 1.42646 1.50123 2.37427 2.41687 2.73426 2.82463 2.99328 3.06437 3.21335 3.26473 3.34159 3.38507 3.63760 3.76716 3.87798 3.92215 4.02903 4.16085 4.27365 4.33698 4.38572 4.44115 4.48549 4.51228 4.53678 4.57126 4.61049 4.71589 4.76274 4.83780 4.87466 4.90814 4.95687 4.97275 5.06356 5.09166 5.19405 5.25528 5.44532 5.88344 5.89656 6.06268 6.14194 6.43085 6.93112 7.63716 8.03431 9.04590 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012688 B = 0.004817 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.314832 B = 5810.851623 C = 6919.461141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.276 3.724 3 F -0.192 7.192 4 F -0.190 7.190 5 C 0.499 3.501 6 O -0.523 6.523 7 N -0.588 5.588 8 C 0.103 3.897 9 C -0.046 4.046 10 C -0.116 4.116 11 C 0.118 3.882 12 N -0.615 5.615 13 C -0.245 4.245 14 H 0.052 0.948 15 C -0.031 4.031 16 N -0.956 5.956 17 Si 0.939 3.061 18 H -0.270 1.270 19 H -0.315 1.315 20 H -0.264 1.264 21 C 0.144 3.856 22 C -0.107 4.107 23 C -0.107 4.107 24 H 0.140 0.860 25 C 0.048 3.952 26 O -0.394 6.394 27 C 0.052 3.948 28 C 0.104 3.896 29 H 0.119 0.881 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.029 0.971 38 H 0.052 0.948 39 H 0.261 0.739 40 H 0.024 0.976 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.465 -5.247 12.394 22.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.237 3.763 3 F -0.173 7.173 4 F -0.171 7.171 5 C 0.283 3.717 6 O -0.399 6.399 7 N -0.320 5.320 8 C -0.019 4.019 9 C -0.047 4.047 10 C -0.155 4.155 11 C -0.006 4.006 12 N -0.340 5.340 13 C -0.374 4.374 14 H 0.070 0.930 15 C -0.226 4.226 16 N -0.603 5.603 17 Si 0.768 3.232 18 H -0.196 1.196 19 H -0.244 1.244 20 H -0.189 1.189 21 C 0.019 3.981 22 C -0.145 4.145 23 C -0.126 4.126 24 H 0.157 0.843 25 C -0.028 4.028 26 O -0.314 6.314 27 C -0.025 4.025 28 C 0.002 3.998 29 H 0.137 0.863 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.047 0.953 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.042 0.958 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.108 0.892 45 H 0.098 0.902 46 H 0.090 0.910 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.868 -5.461 12.707 23.394 hybrid contribution 0.351 0.850 -1.123 1.451 sum -18.517 -4.611 11.585 22.324 Atomic orbital electron populations 1.22688 0.86115 1.07398 1.07131 1.21611 0.97438 0.75280 0.81967 1.93077 1.90618 1.37010 1.96578 1.93089 1.90833 1.80948 1.52204 1.20626 0.81342 0.83744 0.85963 1.90749 1.55757 1.33477 1.59958 1.48528 1.14792 1.40111 1.28574 1.22703 0.87741 0.92163 0.99292 1.20941 0.93069 0.96413 0.94274 1.21959 0.99457 0.97127 0.96952 1.21431 0.97475 0.90763 0.90963 1.44437 1.23865 1.16734 1.48920 1.18851 0.97881 0.93143 1.27546 0.92973 1.25836 0.96922 1.00315 0.99497 1.69954 1.14086 1.24936 1.51296 0.86031 0.80381 0.80162 0.76594 1.19637 1.24376 1.18909 1.21090 0.92888 0.88407 0.95709 1.21677 1.01134 0.96416 0.95316 1.23637 0.95823 0.98066 0.95035 0.84252 1.23419 0.85159 0.98178 0.96051 1.88162 1.31163 1.42095 1.69986 1.23336 0.96872 0.87537 0.94785 1.23118 0.92499 0.99670 0.84527 0.86336 0.87842 0.87294 0.87681 0.89900 0.90701 0.90560 0.88979 0.95324 0.92994 0.93021 0.95834 0.92711 0.90909 0.90917 0.89152 0.90177 0.90996 0.89054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.78 8.91 71.98 0.64 -2.14 16 2 C 0.28 6.37 2.04 29.85 0.06 6.43 16 3 F -0.19 -4.80 14.52 44.97 0.65 -4.15 16 4 F -0.19 -5.00 17.05 44.97 0.77 -4.24 16 5 C 0.50 12.39 6.91 87.65 0.61 13.00 16 6 O -0.52 -14.17 15.91 -3.03 -0.05 -14.22 16 7 N -0.59 -13.82 2.98 -786.13 -2.34 -16.16 16 8 C 0.10 2.61 2.98 86.55 0.26 2.87 16 9 C -0.05 -1.11 0.37 -51.91 -0.02 -1.13 16 10 C -0.12 -3.24 4.41 30.42 0.13 -3.10 16 11 C 0.12 4.58 3.94 86.40 0.34 4.92 16 12 N -0.62 -27.14 2.75 -698.51 -1.92 -29.07 16 13 C -0.24 -13.40 10.03 84.03 0.84 -12.56 16 14 H 0.05 3.14 8.06 -2.91 -0.02 3.12 16 15 C -0.03 -1.77 5.23 84.86 0.44 -1.32 16 16 N -0.96 -59.13 13.97 21.65 0.30 -58.83 16 17 Si 0.94 45.56 24.36 68.60 1.67 47.23 16 18 H -0.27 -12.16 6.63 99.48 0.66 -11.50 16 19 H -0.31 -15.75 7.11 99.48 0.71 -15.04 16 20 H -0.26 -12.41 6.64 99.48 0.66 -11.75 16 21 C 0.14 5.23 6.20 86.41 0.54 5.76 16 22 C -0.11 -2.90 4.90 30.42 0.15 -2.75 16 23 C -0.11 -1.95 3.44 -9.18 -0.03 -1.98 16 24 H 0.14 1.99 8.13 -2.39 -0.02 1.97 16 25 C 0.05 0.89 6.47 72.25 0.47 1.36 16 26 O -0.39 -8.81 11.27 -148.98 -1.68 -10.49 16 27 C 0.05 1.01 7.34 72.27 0.53 1.54 16 28 C 0.10 2.04 3.36 46.10 0.16 2.20 16 29 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.10 1.59 7.87 -2.39 -0.02 1.57 16 33 H 0.08 2.07 7.37 -2.39 -0.02 2.06 16 34 H 0.07 2.21 5.25 -2.39 -0.01 2.20 16 35 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.09 2.12 5.55 -2.39 -0.01 2.11 16 37 H 0.03 1.10 6.61 -2.39 -0.02 1.08 16 38 H 0.05 2.26 4.46 -2.39 -0.01 2.25 16 39 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 40 H 0.02 0.86 6.58 -2.39 -0.02 0.85 16 41 H 0.05 2.08 7.93 -2.39 -0.02 2.06 16 42 H 0.07 1.76 7.85 -2.38 -0.02 1.74 16 43 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 45 H 0.08 1.59 4.60 -2.39 -0.01 1.58 16 46 H 0.07 1.60 7.31 -2.39 -0.02 1.59 16 47 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 Total: -1.00 -68.02 352.60 3.42 -64.61 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.91 Total: 12.22 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 5.11 Total: 13.09 kcal Atomic # 7 Polarization: -100.09 SS G_CDS: -3.97 Total: -104.06 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -1.73 Total: -24.70 kcal Atomic # 9 Polarization: -9.80 SS G_CDS: 1.42 Total: -8.38 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.67 Total: 47.23 kcal Total: -68.02 3.42 -64.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079218582.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.625 kcal (2) G-P(sol) polarization free energy of solvation -68.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds