Wall clock time and date at job start Wed Apr 1 2020 04:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 120.00031 * 2 1 4 4 H 1.48500 * 109.47524 * 240.00265 * 3 2 1 5 5 H 1.48504 * 109.47176 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46901 * 119.99930 * 3 2 1 7 7 C 1.38807 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00178 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99875 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00089 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.50255 * 35.03777 * 10 9 7 12 12 C 1.52875 * 109.48825 * 155.08764 * 10 9 7 13 13 C 1.53946 * 109.73228 * 192.86678 * 12 10 9 14 14 C 1.52448 * 110.73292 * 44.36671 * 13 12 10 15 15 C 1.53799 * 109.40568 * 246.27480 * 14 13 12 16 16 C 1.51798 * 109.06137 * 77.78411 * 15 14 13 17 17 N 1.46968 * 109.39856 * 287.19705 * 16 15 14 18 18 C 1.34781 * 120.36273 * 291.89583 * 17 16 15 19 19 O 1.21522 * 119.99905 * 181.43619 * 18 17 16 20 20 C 1.48120 * 120.00068 * 1.44010 * 18 17 16 21 21 C 1.39819 * 119.37593 * 172.88887 * 20 18 17 22 22 C 1.36971 * 119.60837 * 180.02562 * 21 20 18 23 23 C 1.39809 * 118.25146 * 0.25009 * 22 21 20 24 24 N 1.34652 * 135.00299 * 179.72263 * 23 22 21 25 25 N 1.28671 * 109.15838 * 180.02562 * 24 23 22 26 26 N 1.28773 * 111.84771 * 359.44681 * 25 24 23 27 27 H 0.96999 * 125.86442 * 179.97438 * 26 25 24 28 28 C 1.37249 * 108.27781 * 0.65253 * 26 25 24 29 29 N 1.31960 * 134.71158 * 179.28831 * 28 26 25 30 30 C 1.45334 * 119.27044 * 111.62526 * 17 16 15 31 31 H 0.97001 * 119.99779 * 0.02562 * 1 2 3 32 32 H 0.97003 * 120.00017 * 0.02562 * 9 7 2 33 33 H 1.09002 * 109.42866 * 312.95139 * 12 10 9 34 34 H 1.09004 * 109.42565 * 72.78550 * 12 10 9 35 35 H 1.09006 * 109.22652 * 164.68523 * 13 12 10 36 36 H 1.09002 * 109.23138 * 284.08742 * 13 12 10 37 37 H 1.09001 * 109.47879 * 6.25221 * 14 13 12 38 38 H 1.08997 * 109.48520 * 126.27237 * 14 13 12 39 39 H 1.09002 * 109.52156 * 197.73990 * 15 14 13 40 40 H 1.09004 * 109.51738 * 317.86345 * 15 14 13 41 41 H 1.08991 * 109.17395 * 167.34945 * 16 15 14 42 42 H 1.09004 * 109.59398 * 47.29977 * 16 15 14 43 43 H 1.08001 * 120.19077 * 0.04732 * 21 20 18 44 44 H 1.07994 * 120.87077 * 179.97438 * 22 21 20 45 45 H 1.08999 * 109.67283 * 76.66254 * 30 17 16 46 46 H 1.09003 * 109.67662 * 197.16357 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9686 -3.5513 0.5893 12 6 1.1812 -4.7520 0.6065 13 6 2.0368 -5.9960 0.9071 14 6 3.3528 -5.5994 1.5665 15 6 4.5185 -5.9262 0.6179 16 6 4.5956 -4.8590 -0.4588 17 7 3.4802 -5.0335 -1.3998 18 6 3.4352 -6.1089 -2.2111 19 8 2.5236 -6.2334 -3.0049 20 6 4.4970 -7.1389 -2.1351 21 6 4.3616 -8.3191 -2.8725 22 6 5.3403 -9.2750 -2.8053 23 6 6.4478 -9.0319 -1.9874 24 7 7.5669 -9.7115 -1.6731 25 7 8.2690 -9.0124 -0.8522 26 7 7.7110 -7.8829 -0.5857 27 1 8.0633 -7.2008 0.0073 28 6 6.5248 -7.8161 -1.2729 29 7 5.5567 -6.9246 -1.3692 30 6 2.4232 -4.0369 -1.4416 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 0.7340 -4.3874 1.5313 34 1 0.3919 -5.0162 -0.0973 35 1 1.4857 -6.6578 1.5753 36 1 2.2469 -6.5209 -0.0248 37 1 3.3454 -4.5303 1.7785 38 1 3.4747 -6.1536 2.4971 39 1 5.4517 -5.9460 1.1810 40 1 4.3507 -6.8994 0.1565 41 1 5.5410 -4.9563 -0.9923 42 1 4.5344 -3.8720 -0.0003 43 1 3.4907 -8.4759 -3.4916 44 1 5.2565 -10.1942 -3.3659 45 1 2.7724 -3.1540 -1.9770 46 1 1.5492 -4.4498 -1.9455 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088324128.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:42 Heat of formation + Delta-G solvation = 142.840707 kcal Electronic energy + Delta-G solvation = -31346.528781 eV Core-core repulsion = 27275.365836 eV Total energy + Delta-G solvation = -4071.162945 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.79170 -40.95621 -38.93650 -37.66804 -35.18093 -34.49681 -33.89518 -32.49604 -32.02512 -31.25252 -29.96264 -27.53885 -26.37793 -25.64704 -24.39701 -23.68238 -23.11223 -22.58685 -21.51561 -20.39957 -19.20454 -18.93234 -18.68836 -17.39537 -17.23500 -16.95423 -16.35952 -15.79120 -15.54573 -14.84767 -14.64787 -14.52062 -14.14488 -14.12188 -13.76507 -13.49590 -13.27324 -13.12978 -12.84720 -12.77907 -12.48188 -12.40802 -12.10893 -12.09655 -11.55525 -11.48549 -11.31159 -10.89905 -10.83662 -10.70899 -10.48278 -10.36464 -10.28524 -10.22958 -9.81342 -9.70295 -9.64915 -9.58737 -9.32533 -8.99075 -8.28849 -7.04352 -5.83560 -3.13451 -0.27636 0.57153 1.69567 1.71938 2.56217 2.96896 3.30556 3.39126 3.41922 3.43787 3.44995 3.81845 3.96465 4.28301 4.38289 4.52832 4.88572 4.94561 4.96205 5.07985 5.11293 5.32887 5.39154 5.41913 5.46205 5.51460 5.60606 5.71326 5.79487 5.83663 5.87021 5.93725 6.06072 6.07527 6.11811 6.19818 6.27425 6.32392 6.43602 6.52761 6.58206 6.72733 6.76621 6.94131 7.05942 7.51745 7.61160 7.69133 8.15067 8.34443 9.45710 10.01818 10.36426 11.38471 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.017870 B = 0.002997 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.492529 B = 9341.318233 C = 9663.208910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.009 4.009 3 Si 0.906 3.094 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.718 5.718 10 C 0.159 3.841 11 H 0.067 0.933 12 C -0.124 4.124 13 C -0.112 4.112 14 C -0.133 4.133 15 C -0.119 4.119 16 C 0.112 3.888 17 N -0.568 5.568 18 C 0.560 3.440 19 O -0.530 6.530 20 C 0.150 3.850 21 C -0.120 4.120 22 C -0.007 4.007 23 C -0.025 4.025 24 N -0.241 5.241 25 N 0.008 4.992 26 N -0.401 5.401 27 H 0.459 0.541 28 C 0.208 3.792 29 N -0.423 5.423 30 C 0.085 3.915 31 H 0.257 0.743 32 H 0.386 0.614 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.166 0.834 44 H 0.158 0.842 45 H 0.073 0.927 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.864 -18.457 -0.780 22.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.206 4.206 3 Si 0.737 3.263 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.088 0.912 9 N -0.358 5.358 10 C 0.048 3.952 11 H 0.084 0.916 12 C -0.162 4.162 13 C -0.150 4.150 14 C -0.170 4.170 15 C -0.157 4.157 16 C -0.010 4.010 17 N -0.299 5.299 18 C 0.345 3.655 19 O -0.407 6.407 20 C -0.004 4.004 21 C -0.143 4.143 22 C -0.037 4.037 23 C -0.152 4.152 24 N -0.118 5.118 25 N 0.024 4.976 26 N -0.133 5.133 27 H 0.307 0.693 28 C -0.036 4.036 29 N -0.141 5.141 30 C -0.040 4.040 31 H 0.067 0.933 32 H 0.219 0.781 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.183 0.817 44 H 0.176 0.824 45 H 0.091 0.909 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 13.780 -18.497 -0.469 23.071 hybrid contribution -0.412 1.354 -0.158 1.424 sum 13.368 -17.143 -0.628 21.749 Atomic orbital electron populations 1.69653 1.05132 1.25937 1.56916 1.24753 0.95484 0.97724 1.02591 0.86293 0.78581 0.83591 0.77840 1.21211 1.21670 1.21236 1.19150 0.90880 0.84009 1.43581 0.91231 1.42411 1.05921 0.99500 1.88017 1.20909 0.95734 0.86502 0.92074 0.91550 1.22018 0.98152 0.94892 1.01122 1.21628 0.95782 0.97750 0.99881 1.21950 0.94641 1.02685 0.97745 1.22019 0.97995 0.99438 0.96263 1.21758 0.89208 0.99482 0.90576 1.47837 1.24206 1.21729 1.36096 1.17662 0.84479 0.81480 0.81903 1.90813 1.34963 1.77033 1.37857 1.21415 0.91799 0.94830 0.92339 1.21756 1.00583 0.92357 0.99639 1.20497 0.88928 0.99888 0.94419 1.20680 0.97496 0.94301 1.02758 1.75409 1.02981 1.23238 1.10129 1.78113 1.18901 0.90739 1.09819 1.44662 1.14490 1.16921 1.37223 0.69292 1.20023 0.90898 0.94571 0.98116 1.67353 0.99747 1.29409 1.17556 1.22797 0.89515 0.89775 1.01902 0.93329 0.78056 0.91641 0.92326 0.93047 0.92620 0.90232 0.92841 0.91988 0.91615 0.89580 0.89484 0.81664 0.82417 0.90874 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.20 13.06 55.49 0.72 -26.47 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 21.61 29.55 -169.99 -5.02 16.58 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.25 -6.40 9.88 -15.06 -0.15 -6.55 16 8 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 9 N -0.72 -16.93 5.13 -53.27 -0.27 -17.20 16 10 C 0.16 2.90 2.29 -67.76 -0.16 2.75 16 11 H 0.07 1.19 3.29 -51.93 -0.17 1.02 16 12 C -0.12 -2.01 5.22 -26.30 -0.14 -2.15 16 13 C -0.11 -1.52 5.40 -26.52 -0.14 -1.67 16 14 C -0.13 -1.62 5.49 -26.60 -0.15 -1.77 16 15 C -0.12 -1.29 4.36 -26.93 -0.12 -1.41 16 16 C 0.11 1.37 4.85 -4.40 -0.02 1.35 16 17 N -0.57 -8.27 1.70 -175.69 -0.30 -8.56 16 18 C 0.56 8.12 6.25 -12.20 -0.08 8.04 16 19 O -0.53 -9.11 15.76 5.35 0.08 -9.02 16 20 C 0.15 1.73 5.75 -82.93 -0.48 1.26 16 21 C -0.12 -1.12 9.55 -39.45 -0.38 -1.50 16 22 C -0.01 -0.05 10.16 -39.45 -0.40 -0.45 16 23 C -0.02 -0.25 7.38 -84.90 -0.63 -0.88 16 24 N -0.24 -2.63 12.43 32.12 0.40 -2.23 16 25 N 0.01 0.07 13.28 60.35 0.80 0.87 16 26 N -0.40 -3.09 7.06 31.13 0.22 -2.87 16 27 H 0.46 1.91 8.96 -190.26 -1.71 0.21 16 28 C 0.21 2.02 8.56 -156.28 -1.34 0.69 16 29 N -0.42 -4.42 3.97 -8.90 -0.04 -4.46 16 30 C 0.08 1.50 5.60 -4.44 -0.02 1.47 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.39 9.85 7.80 -40.82 -0.32 9.53 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.06 0.98 7.87 -51.93 -0.41 0.57 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.79 5.37 -51.93 -0.28 0.51 16 37 H 0.08 1.09 5.47 -51.93 -0.28 0.81 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.76 4.77 -51.93 -0.25 0.51 16 41 H 0.09 0.97 6.33 -51.93 -0.33 0.64 16 42 H 0.09 1.15 6.06 -51.93 -0.31 0.84 16 43 H 0.17 1.37 7.63 -52.49 -0.40 0.97 16 44 H 0.16 0.83 8.06 -52.49 -0.42 0.40 16 45 H 0.07 1.44 8.09 -51.93 -0.42 1.02 16 46 H 0.08 1.57 6.81 -51.93 -0.35 1.22 16 LS Contribution 354.69 15.07 5.35 5.35 Total: -1.00 -31.38 354.69 -9.23 -40.61 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -6.89 Total: 8.56 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -4.29 Total: -1.16 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: 1.54 Total: -60.92 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.08 Total: -9.02 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.38 -9.23 -40.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088324128.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.456 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds