Wall clock time and date at job start Wed Apr 1 2020 04:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00303 * 2 1 4 4 H 1.48501 * 109.47037 * 240.00549 * 3 2 1 5 5 H 1.48503 * 109.46791 * 0.02562 * 3 2 1 6 6 H 1.48490 * 109.47173 * 120.00092 * 3 2 1 7 7 C 1.38811 * 119.99680 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99889 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00223 * 0.27054 * 7 2 1 10 10 C 1.46494 * 120.00098 * 179.72610 * 9 7 2 11 11 H 1.09003 * 109.48625 * 34.96758 * 10 9 7 12 12 C 1.52883 * 109.48673 * 155.00086 * 10 9 7 13 13 C 1.53958 * 109.72584 * 192.86291 * 12 10 9 14 14 C 1.52449 * 110.72713 * 44.36259 * 13 12 10 15 15 C 1.53802 * 109.40730 * 246.26317 * 14 13 12 16 16 C 1.52332 * 109.15666 * 77.84316 * 15 14 13 17 17 N 1.46960 * 109.09797 * 287.30043 * 16 15 14 18 18 C 1.34770 * 120.36759 * 291.66688 * 17 16 15 19 19 O 1.21575 * 120.00223 * 161.22394 * 18 17 16 20 20 C 1.47687 * 120.00134 * 341.22712 * 18 17 16 21 21 C 1.41601 * 120.03066 * 25.08976 * 20 18 17 22 22 C 1.35780 * 119.54822 * 179.97438 * 21 20 18 23 23 C 1.40859 * 119.39136 * 359.97438 * 22 21 20 24 24 N 1.32492 * 133.41995 * 179.97438 * 23 22 21 25 25 N 1.28527 * 110.24638 * 180.02562 * 24 23 22 26 26 N 1.28991 * 110.84492 * 0.02562 * 25 24 23 27 27 N 1.36931 * 119.93464 * 0.02562 * 23 22 21 28 28 C 1.35504 * 120.83836 * 359.73507 * 27 23 22 29 29 C 1.45339 * 119.26866 * 111.63957 * 17 16 15 30 30 H 0.97006 * 119.99618 * 359.97438 * 1 2 3 31 31 H 0.96994 * 119.99874 * 359.72551 * 9 7 2 32 32 H 1.08998 * 109.42551 * 312.93958 * 12 10 9 33 33 H 1.08996 * 109.42978 * 72.83541 * 12 10 9 34 34 H 1.09003 * 109.22233 * 164.67872 * 13 12 10 35 35 H 1.08992 * 109.22546 * 284.03740 * 13 12 10 36 36 H 1.08994 * 109.48238 * 6.24400 * 14 13 12 37 37 H 1.09002 * 109.47715 * 126.28432 * 14 13 12 38 38 H 1.09000 * 109.51725 * 197.74758 * 15 14 13 39 39 H 1.08997 * 109.52584 * 317.93415 * 15 14 13 40 40 H 1.08998 * 109.53748 * 47.19266 * 16 15 14 41 41 H 1.09006 * 109.53119 * 167.42259 * 16 15 14 42 42 H 1.07992 * 120.22418 * 359.97438 * 21 20 18 43 43 H 1.07994 * 120.30594 * 180.02562 * 22 21 20 44 44 H 1.07995 * 119.81946 * 180.26312 * 28 27 23 45 45 H 1.09000 * 109.67522 * 196.92832 * 29 17 16 46 46 H 1.08996 * 109.67626 * 76.38438 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0067 10 6 2.0580 -3.6568 -0.0133 11 1 2.9691 -3.5537 0.5761 12 6 1.1817 -4.7547 0.5901 13 6 2.0379 -6.0001 0.8839 14 6 3.3548 -5.6063 1.5431 15 6 4.5192 -5.9290 0.5915 16 6 4.5979 -4.8538 -0.4848 17 7 3.4781 -5.0275 -1.4206 18 6 3.4317 -6.0994 -2.2361 19 8 2.3797 -6.4273 -2.7498 20 6 4.6587 -6.8759 -2.5058 21 6 5.7205 -6.8713 -1.5689 22 6 6.8439 -7.5890 -1.8265 23 6 6.9334 -8.3272 -3.0229 24 7 7.8709 -9.1039 -3.5457 25 7 7.4840 -9.5654 -4.6811 26 7 6.3030 -9.1361 -4.9727 27 7 5.8928 -8.3153 -3.9127 28 6 4.7681 -7.6040 -3.6568 29 6 2.4210 -4.0307 -1.4565 30 1 -0.4850 0.8401 0.0004 31 1 0.3556 -2.3880 -0.0066 32 1 0.7360 -4.3942 1.5172 33 1 0.3920 -5.0164 -0.1141 34 1 1.4878 -6.6648 1.5500 35 1 2.2459 -6.5211 -0.0506 36 1 3.3478 -4.5381 1.7597 37 1 3.4781 -6.1648 2.4709 38 1 5.4531 -5.9512 1.1532 39 1 4.3504 -6.8996 0.1252 40 1 4.5364 -3.8691 -0.0216 41 1 5.5409 -4.9461 -1.0238 42 1 5.6372 -6.3008 -0.6558 43 1 7.6609 -7.5946 -1.1204 44 1 3.9556 -7.6096 -4.3682 45 1 1.5461 -4.4416 -1.9603 46 1 2.7693 -3.1453 -1.9884 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088347586.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:36 Heat of formation + Delta-G solvation = 162.116525 kcal Electronic energy + Delta-G solvation = -31002.019568 eV Core-core repulsion = 26931.692485 eV Total energy + Delta-G solvation = -4070.327083 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.64504 -42.25262 -39.71054 -38.90761 -36.89368 -35.38166 -35.04171 -34.22553 -33.10916 -31.93503 -31.49452 -28.92221 -27.87755 -26.55999 -25.49994 -25.43956 -24.05646 -23.77830 -22.90364 -21.42195 -20.45932 -19.66383 -19.15954 -18.71509 -18.14151 -18.04677 -17.64824 -16.93062 -16.64612 -16.19650 -15.94304 -15.60244 -15.54376 -15.27817 -15.02400 -14.85553 -14.39163 -14.26664 -14.00981 -13.91262 -13.83958 -13.47932 -13.04904 -12.98529 -12.91372 -12.84006 -12.61222 -12.37194 -12.36340 -12.20866 -12.10664 -11.81654 -11.76627 -11.48797 -11.42730 -11.36377 -11.16820 -11.09168 -10.78229 -9.90045 -9.54825 -8.95448 -7.89811 -5.18969 -1.06251 -0.66900 0.38639 0.69821 1.43645 1.52182 1.54030 1.59786 1.83582 2.09651 2.49588 2.60548 2.87849 3.13911 3.30378 3.44275 3.59867 3.69407 3.82174 3.91627 3.96934 4.01365 4.08936 4.20104 4.29529 4.40170 4.42245 4.51887 4.56719 4.59878 4.65213 4.75023 4.83787 4.90631 4.93818 4.98591 5.06225 5.08312 5.14165 5.27532 5.33352 5.41966 5.46050 5.48333 5.61575 5.72933 6.29224 6.32506 6.89883 7.06770 7.37589 8.12420 8.34590 9.33589 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.017288 B = 0.002799 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.187950 B =10000.355997 C =10363.264683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.077 4.077 3 Si 0.968 3.032 4 H -0.278 1.278 5 H -0.306 1.306 6 H -0.273 1.273 7 C -0.232 4.232 8 H 0.087 0.913 9 N -0.734 5.734 10 C 0.160 3.840 11 H 0.088 0.912 12 C -0.119 4.119 13 C -0.110 4.110 14 C -0.123 4.123 15 C -0.160 4.160 16 C 0.064 3.936 17 N -0.583 5.583 18 C 0.570 3.430 19 O -0.564 6.564 20 C -0.130 4.130 21 C -0.070 4.070 22 C -0.076 4.076 23 C 0.239 3.761 24 N -0.343 5.343 25 N -0.025 5.025 26 N -0.133 5.133 27 N -0.306 5.306 28 C 0.160 3.840 29 C 0.104 3.896 30 H 0.248 0.752 31 H 0.370 0.630 32 H 0.052 0.948 33 H 0.039 0.961 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.136 0.864 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.121 0.879 42 H 0.238 0.762 43 H 0.217 0.783 44 H 0.192 0.808 45 H 0.059 0.941 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.226 -15.042 3.399 21.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.269 4.269 3 Si 0.797 3.203 4 H -0.205 1.205 5 H -0.233 1.233 6 H -0.199 1.199 7 C -0.364 4.364 8 H 0.105 0.895 9 N -0.373 5.373 10 C 0.052 3.948 11 H 0.105 0.895 12 C -0.158 4.158 13 C -0.148 4.148 14 C -0.161 4.161 15 C -0.197 4.197 16 C -0.056 4.056 17 N -0.314 5.314 18 C 0.358 3.642 19 O -0.444 6.444 20 C -0.139 4.139 21 C -0.094 4.094 22 C -0.098 4.098 23 C -0.014 4.014 24 N -0.204 5.204 25 N -0.018 5.018 26 N -0.116 5.116 27 N -0.084 5.084 28 C 0.029 3.971 29 C -0.022 4.022 30 H 0.057 0.943 31 H 0.201 0.799 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.154 0.846 39 H 0.100 0.900 40 H 0.120 0.880 41 H 0.139 0.861 42 H 0.254 0.746 43 H 0.234 0.766 44 H 0.209 0.791 45 H 0.077 0.923 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.494 -16.079 1.974 22.417 hybrid contribution -1.525 1.636 -0.335 2.261 sum 13.970 -14.443 1.639 20.160 Atomic orbital electron populations 1.69824 1.06807 1.25909 1.59721 1.25543 0.96170 1.01104 1.04081 0.85294 0.77160 0.79483 0.78318 1.20464 1.23261 1.19897 1.19608 0.91679 0.84661 1.40458 0.89488 1.42671 1.05499 1.01030 1.88088 1.21130 0.96197 0.84759 0.92747 0.89497 1.21933 0.98155 0.95889 0.99780 1.21644 0.96820 0.95949 1.00418 1.21794 0.93056 1.02379 0.98828 1.22646 1.01827 0.98167 0.97036 1.22806 0.89394 1.02461 0.90971 1.47568 1.24526 1.21829 1.37436 1.17773 0.86895 0.80368 0.79199 1.90835 1.31878 1.68255 1.53410 1.19632 0.97607 1.00931 0.95718 1.23913 0.88933 0.95042 1.01489 1.21017 1.01844 0.94697 0.92287 1.23831 0.84733 0.97682 0.95104 1.75078 1.24596 1.15988 1.04725 1.77841 1.03537 1.13282 1.07140 1.82824 1.09764 1.11727 1.07307 1.48733 1.13984 1.30563 1.15127 1.21734 0.87461 0.89090 0.98775 1.22227 0.89858 0.89415 1.00717 0.94314 0.79920 0.92910 0.94254 0.92094 0.92684 0.91372 0.89875 0.84577 0.90042 0.87990 0.86144 0.74647 0.76637 0.79095 0.92251 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.04 13.06 21.65 0.28 -56.76 16 2 C -0.08 -4.10 5.50 84.86 0.47 -3.64 16 3 Si 0.97 42.92 29.55 68.60 2.03 44.95 16 4 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.31 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 7 C -0.23 -11.42 9.88 84.03 0.83 -10.59 16 8 H 0.09 3.89 7.83 -2.91 -0.02 3.87 16 9 N -0.73 -33.02 5.12 -322.42 -1.65 -34.67 16 10 C 0.16 5.18 2.29 45.10 0.10 5.29 16 11 H 0.09 2.48 3.29 -2.39 -0.01 2.47 16 12 C -0.12 -3.53 5.22 30.88 0.16 -3.37 16 13 C -0.11 -2.33 5.40 30.74 0.17 -2.17 16 14 C -0.12 -1.75 5.49 30.68 0.17 -1.59 16 15 C -0.16 -1.16 3.80 30.64 0.12 -1.04 16 16 C 0.06 0.75 4.79 86.07 0.41 1.16 16 17 N -0.58 -12.25 1.68 -830.25 -1.40 -13.65 16 18 C 0.57 12.71 5.68 86.74 0.49 13.20 16 19 O -0.56 -17.44 16.07 -3.95 -0.06 -17.50 16 20 C -0.13 -2.01 5.67 -20.33 -0.12 -2.12 16 21 C -0.07 -0.53 6.51 22.53 0.15 -0.38 16 22 C -0.08 -0.60 10.09 22.34 0.23 -0.38 16 23 C 0.24 4.39 8.02 134.16 1.08 5.47 16 24 N -0.34 -8.26 12.26 -55.52 -0.68 -8.94 16 25 N -0.02 -0.69 13.35 37.02 0.49 -0.19 16 26 N -0.13 -3.52 13.99 37.02 0.52 -3.00 16 27 N -0.31 -6.51 3.92 -192.06 -0.75 -7.27 16 28 C 0.16 2.91 10.75 83.75 0.90 3.81 16 29 C 0.10 3.19 5.67 86.75 0.49 3.69 16 30 H 0.25 14.35 8.31 -92.70 -0.77 13.58 16 31 H 0.37 18.81 7.80 -92.71 -0.72 18.08 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.04 1.29 7.87 -2.39 -0.02 1.28 16 34 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.05 1.24 5.38 -2.39 -0.01 1.23 16 36 H 0.07 1.22 5.47 -2.39 -0.01 1.21 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.14 -0.17 8.00 -2.39 -0.02 -0.19 16 39 H 0.08 0.59 5.33 -2.39 -0.01 0.58 16 40 H 0.10 1.43 6.07 -2.39 -0.01 1.41 16 41 H 0.12 0.61 5.38 -2.38 -0.01 0.59 16 42 H 0.24 0.56 1.82 -20.14 -0.04 0.52 16 43 H 0.22 -0.11 8.06 -2.91 -0.02 -0.13 16 44 H 0.19 3.42 7.77 -2.91 -0.02 3.39 16 45 H 0.06 2.14 6.77 -2.39 -0.02 2.12 16 46 H 0.05 1.89 8.09 -2.39 -0.02 1.87 16 Total: -1.00 -74.16 352.76 4.73 -69.43 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.32 Total: 20.27 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 5.64 Total: 7.33 kcal Atomic # 7 Polarization: -121.29 SS G_CDS: -3.19 Total: -124.48 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.06 Total: -17.50 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -74.16 4.73 -69.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088347586.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.544 kcal (2) G-P(sol) polarization free energy of solvation -74.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds